Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1175.11 Capsicum annuum HOM05D001758 ORTHO05D005969 5.2e-57 224.2 115 100.0
PGSC0003DMG400014497 Solanum tuberosum HOM05D001758 ORTHO05D005969 2.7e-45 185.3 100 90.0
Nitab4.5_0000052g0050 Nicotiana tabacum HOM05D001758 ORTHO05D005969 3.5e-45 184.9 100 91.0
Nitab4.5_0003338g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005969 3.5e-45 184.9 100 90.0
Solyc08g068210.3 Solanum lycopersicum HOM05D001758 ORTHO05D005969 8.7e-44 180.3 100 86.0
Sopen08g022070 Solanum pennellii HOM05D001758 ORTHO05D005969 1.9e-43 179.1 100 86.0
Peaxi162Scf00523g00067 Petunia axillaris HOM05D001758 ORTHO05D005969 4.8e-42 174.5 99 84.8
Dinv30252 Davidia involucrata HOM05D001758 ORTHO05D005969 1.5e-40 169.5 99 81.8
MSTRG.14010 Avicennia marina HOM05D001758 ORTHO05D005969 2.6e-40 168.7 102 81.4
Hma1.2p1_1255F.1_g270630 Hydrangea macrophylla HOM05D001758 ORTHO05D005969 4.5e-40 167.9 99 80.8
Hma1.2p1_1434F.1_g283100 Hydrangea macrophylla HOM05D001758 ORTHO05D005969 4.5e-40 167.9 99 80.8
Hma1.2p1_1434F.1_g283103 Hydrangea macrophylla HOM05D001758 ORTHO05D005969 4.5e-40 167.9 99 80.8
Nn2g11730 Nelumbo nucifera HOM05D001758 ORTHO05D005969 2.9e-39 165.2 109 76.1
Oeu063247.1 Olea europaea HOM05D001758 ORTHO05D005969 2.9e-39 165.2 99 77.8
Atru.chr7.2164 Acer truncatum HOM05D001758 ORTHO05D005969 6.4e-39 164.1 99 77.8
Hund03441 Selenicereus undatus HOM05D001758 ORTHO05D005969 8.4e-39 163.7 99 76.8
Rhsim07G0153400 Rhododendron simsii HOM05D001758 ORTHO05D005969 1.1e-38 163.3 99 76.8
Hund19549 Selenicereus undatus HOM05D001758 ORTHO05D005969 1.4e-38 162.9 99 75.8
Duzib187G0196 Durio zibethinus HOM05D001758 ORTHO05D005969 3.2e-38 161.8 99 78.8
CSS0047858 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D005969 4.2e-38 161.4 99 77.8
Haze_21844 Corylus avellana HOM05D001758 ORTHO05D005969 5.5e-38 161.0 102 75.5
Actinidia14662 Actinidia chinensis HOM05D001758 ORTHO05D005969 9.3e-38 160.2 99 76.8
COL.COLO4_18700 Corchorus olitorius HOM05D001758 ORTHO05D005969 1.2e-37 159.8 99 78.8
Thecc.09G039400 Theobroma cacao HOM05D001758 ORTHO05D005969 1.2e-37 159.8 99 76.8
Duzib168G2005 Durio zibethinus HOM05D001758 ORTHO05D005969 1.6e-37 159.5 99 76.8
Actinidia15728 Actinidia chinensis HOM05D001758 ORTHO05D005969 2.1e-37 159.1 98 76.5
Migut.E01510 Erythranthe guttata HOM05D001758 ORTHO05D005969 2.1e-37 159.1 99 74.7
ECA246G0078 Erigeron canadensis HOM05D001758 ORTHO05D005969 2.7e-37 158.7 99 74.7
GSVIVG01035675001 Vitis vinifera HOM05D001758 ORTHO05D005969 2.7e-37 158.7 99 75.8
Gohir.A08G251000 Gossypium hirsutum HOM05D001758 ORTHO05D005969 3.5e-37 158.3 99 75.8
Cc08_g08960 Coffea canephora HOM05D001758 ORTHO05D005969 4.6e-37 157.9 99 75.8
QL12p026333 Quercus lobata HOM05D001758 ORTHO05D005969 4.6e-37 157.9 99 75.8
SalBow1G3543 Salvia bowleyana HOM05D001758 ORTHO05D005969 4.6e-37 157.9 99 78.8
TAR383G0857 Trochodendron aralioides HOM05D001758 ORTHO05D005969 4.6e-37 157.9 106 76.4
CiPaw.07G207600 Carya illinoinensis HOM05D001758 ORTHO05D005969 6.0e-37 157.5 99 73.7
MSTRG.1653 Avicennia marina HOM05D001758 ORTHO05D005969 7.9e-37 157.1 102 77.5
Cfa013340 Carpinus fangiana HOM05D001758 ORTHO05D005969 1.0e-36 156.8 98 76.5
Gohir.D08G272500 Gossypium hirsutum HOM05D001758 ORTHO05D005969 1.3e-36 156.4 99 74.7
Gorai.004G290900 Gossypium raimondii HOM05D001758 ORTHO05D005969 1.3e-36 156.4 99 74.7
Nn8g39170 Nelumbo nucifera HOM05D001758 ORTHO05D005969 1.3e-36 156.4 109 74.3
MD15G1098200 Malus domestica HOM05D001758 ORTHO05D005969 2.3e-36 155.6 99 74.7
PSO782G2893 Papaver somniferum HOM05D001758 ORTHO05D005969 3.0e-36 155.2 100 74.0
PSO832G3340 Papaver somniferum HOM05D001758 ORTHO05D005969 3.0e-36 155.2 100 74.0
EL10Ac2g04080 Beta vulgaris HOM05D001758 ORTHO05D005969 3.9e-36 154.8 99 69.7
Ciclev10007447m.g Citrus clementina HOM05D001758 ORTHO05D005969 3.9e-36 154.8 98 74.5
A03p05040 Brassica napus HOM05D001758 ORTHO05D005969 5.1e-36 154.5 99 70.7
BraA03t09838Z Brassica rapa HOM05D001758 ORTHO05D005969 5.1e-36 154.5 99 70.7
RcHm_v2.0_Chr6g0305701 Rosa chinensis HOM05D001758 ORTHO05D005969 5.1e-36 154.5 99 72.7
Carub.0006s0995 Capsella rubella HOM05D001758 ORTHO05D005969 6.7e-36 154.1 94 73.4
Prupe.1G453100 Prunus persica HOM05D001758 ORTHO05D005969 6.7e-36 154.1 99 73.7
C03p05770 Brassica napus HOM05D001758 ORTHO05D005969 1.1e-35 153.3 99 70.7
BolC3t13090H Brassica oleracea HOM05D001758 ORTHO05D005969 1.1e-35 153.3 99 70.7
AL6G22160 Arabidopsis lyrata HOM05D001758 ORTHO05D005969 1.5e-35 152.9 99 68.7
Thhalv10012680m.g Eutrema salsugineum HOM05D001758 ORTHO05D005969 1.5e-35 152.9 99 68.7
Lalb_Chr08g0243281 Lupinus albus HOM05D001758 ORTHO05D005969 1.9e-35 152.5 99 73.7
CARHR201730 Cardamine hirsuta HOM05D001758 ORTHO05D005969 2.5e-35 152.1 99 68.7
MELO3C003587.2 Cucumis melo HOM05D001758 ORTHO05D005969 2.5e-35 152.1 99 71.7
Eucgr.C01579 Eucalyptus grandis HOM05D001758 ORTHO05D005969 2.5e-35 152.1 99 72.7
Phvul.009G105700 Phaseolus vulgaris HOM05D001758 ORTHO05D005969 2.5e-35 152.1 99 70.7
BcaB01g05481 Brassica carinata HOM05D001758 ORTHO05D005969 3.3e-35 151.8 99 68.7
AUR62023022 Chenopodium quinoa HOM05D001758 ORTHO05D005969 4.3e-35 151.4 99 68.7
Sed0018896 Sechium edule HOM05D001758 ORTHO05D005969 4.3e-35 151.4 99 70.7
Aqoxy7G01649 Aquilegia oxysepala HOM05D001758 ORTHO05D005969 5.6e-35 151.0 106 70.8
AT5G11490 Arabidopsis thaliana HOM05D001758 ORTHO05D005969 5.6e-35 151.0 99 67.7
Cpa.g.sc78.83 Carica papaya HOM05D001758 ORTHO05D005969 9.6e-35 150.2 99 71.7
PGR031G3817 Punica granatum HOM05D001758 ORTHO05D005969 9.6e-35 150.2 102 69.6
Ca_15621_v3 Cicer arietinum L. HOM05D001758 ORTHO05D005969 1.3e-34 149.8 99 70.7
Glyma.04G080000 Glycine max HOM05D001758 ORTHO05D005969 1.3e-34 149.8 99 71.7
SGA_v2.0_scaffold169G38643 Striga asiatica HOM05D001758 ORTHO05D005969 1.3e-34 149.8 97 72.2
THA.LOC104799206 Tarenaya hassleriana HOM05D001758 ORTHO05D005969 1.3e-34 149.8 98 71.4
VMungo1309G1162 Vigna mungo HOM05D001758 ORTHO05D005969 1.3e-34 149.8 99 68.7
CsaV3_3G047380 Cucumis sativus L. HOM05D001758 ORTHO05D005969 1.6e-34 149.4 99 70.7
FAN20G3112 Fragaria x ananassa HOM05D001758 ORTHO05D005969 2.1e-34 149.1 99 70.7
FAN15G1147 Fragaria x ananassa HOM05D001758 ORTHO05D005969 2.8e-34 148.7 95 72.6
DCAR_000743 Daucus carota HOM05D001758 ORTHO05D005969 3.7e-34 148.3 99 70.7
Glyma.06G081600 Glycine max HOM05D001758 ORTHO05D005969 3.7e-34 148.3 99 70.7
Psat0s2458g0080 Pisum sativum HOM05D001758 ORTHO05D005969 4.8e-34 147.9 99 71.7
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 6.2e-34 147.5 101 64.4
FvH4_2g36170 Fragaria vesca HOM05D001758 ORTHO05D005969 6.2e-34 147.5 99 69.7
FAN27G1311 Fragaria x ananassa HOM05D001758 ORTHO05D005969 6.2e-34 147.5 95 72.6
Medtr3g109922 Medicago truncatula HOM05D001758 ORTHO05D005969 6.2e-34 147.5 99 69.7
ClCG11G013990 Citrullus lanatus HOM05D001758 ORTHO05D005969 8.1e-34 147.1 99 69.7
C09p65350 Brassica napus HOM05D001758 ORTHO05D005969 1.1e-33 146.7 100 66.0
AUR62009338 Chenopodium quinoa HOM05D001758 ORTHO05D005969 1.1e-33 146.7 94 71.3
Lalb_Chr23g0269421 Lupinus albus HOM05D001758 ORTHO05D005969 1.1e-33 146.7 99 69.7
TPR.G1337 Trifolium pratense HOM05D001758 ORTHO05D005969 1.8e-33 146.0 94 72.3
TWI34G1998 Tripterygium wilfordii HOM05D000335 ORTHO05D005969 1.8e-33 146.0 99 69.7
arahy.Tifrunner.gnm1.ann1.QHEY06 Arachis hypogaea HOM05D001758 ORTHO05D005969 2.4e-33 145.6 99 70.7
arahy.Tifrunner.gnm1.ann1.QIC87W Arachis hypogaea HOM05D001758 ORTHO05D005969 2.4e-33 145.6 99 70.7
BcaC04g19220 Brassica carinata HOM05D001758 ORTHO05D005969 3.1e-33 145.2 100 65.0
BolC9t59361H Brassica oleracea HOM05D001758 ORTHO05D005969 3.1e-33 145.2 100 65.0
Lj8C604G10 Lonicera japonica HOM05D001758 ORTHO05D005969 3.1e-33 145.2 98 66.3
Manes.16G066200 Manihot esculenta HOM05D001758 ORTHO05D005969 3.1e-33 145.2 99 69.7
Sabra06G0190200 Salix brachista HOM05D001758 ORTHO05D005969 3.1e-33 145.2 94 72.3
DCAR_004500 Daucus carota HOM05D001758 ORTHO05D005969 6.9e-33 144.1 94 71.3
TWI63G1177 Tripterygium wilfordii HOM05D001758 ORTHO05D005969 9.0e-33 143.7 99 69.7
CANSAT80G0854 Cannabis sativa HOM05D001758 ORTHO05D005969 1.5e-32 142.9 99 68.7
HanXRQChr00c0343g0573831 Helianthus annuus HOM05D001758 ORTHO05D005969 2.0e-32 142.5 101 71.3
HanXRQChr01g0009241 Helianthus annuus HOM05D001758 ORTHO05D005969 2.0e-32 142.5 101 71.3
HanXRQChr09g0259911 Helianthus annuus HOM05D001758 ORTHO05D005969 2.0e-32 142.5 101 71.3
Potri.006G243100 Populus trichocarpa HOM05D001758 ORTHO05D005969 3.4e-32 141.7 99 67.7
Lj1g0012670 Lotus japonicus HOM05D001758 ORTHO05D005969 5.8e-32 141.0 98 67.3
TAR626G0957 Trochodendron aralioides HOM05D001758 ORTHO05D005969 7.6e-32 140.6 103 74.8
Lsat_1_v5_gn_5_45441 Lactuca sativa HOM05D001758 ORTHO05D005969 1.3e-31 139.8 99 69.7
MBI01_g06521_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D005969 2.9e-31 138.7 106 63.2
unitig_85.g27156 Utricularia gibba HOM05D001758 ORTHO05D005969 2.9e-31 138.7 102 65.7
Zm00001eb358720 Zea mays HOM05D001758 ORTHO05D005969 1.9e-30 136.0 105 64.8
Zm00001eb159350 Zea mays HOM05D001758 ORTHO05D005969 2.5e-30 135.6 105 64.8
ATR0315G064 Amborella trichopoda HOM05D001758 ORTHO05D005969 2.5e-27 125.6 109 56.9
CDE02G2668 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 3.3e-27 125.2 99 61.6
HPP92_019990 Vanilla planifolia HOM05D001758 ORTHO05D005969 4.5e-24 114.8 103 57.3
Pp3c9_26090 Physcomitrium patens HOM05D001758 ORTHO05D005969 1.8e-20 102.8 109 50.5
MD08G1118900 Malus domestica HOM05D001758 ORTHO05D005969 1.5e-19 99.8 74 66.2
SMO259G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D005969 1.3e-18 96.7 101 51.5
Mapoly0060s0014 Marchantia polymorpha HOM05D001758 ORTHO05D005969 4.8e-18 94.7 111 51.4
CBR_g48222 Chara braunii HOM05D001758 ORTHO05D005969 5.9e-16 87.8 115 43.5
AagrBONN_evm.TU.Sc2ySwM_344.2308 Anthoceros agrestis HOM05D001758 ORTHO05D005969 3.8e-15 85.1 100 47.0
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 9.4e-14 80.5 103 41.7
Os01g0626200 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D005969 2.2e-10 69.3 51 66.7
CSS0042291 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D005969 1.4e-09 66.6 53 54.7


User provided reference genes

Program Settings