Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 0.0e+00 1798.9 900 100.0
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1488.8 903 86.0
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1486.9 903 86.0
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1486.5 903 85.9
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1459.1 897 84.3
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1340.5 915 77.3
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 0.0e+00 1325.1 903 78.5
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1323.1 912 76.4
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1316.2 915 75.8
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1313.1 915 75.8
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1305.4 920 75.0
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1305.4 910 75.9
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1300.8 915 74.8
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1298.9 917 73.9
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1298.1 918 74.0
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1295.0 913 74.4
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1294.3 911 75.2
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1294.3 914 74.7
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1292.7 915 73.9
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1288.9 915 73.8
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1288.1 930 73.7
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1284.2 912 74.6
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1283.9 916 74.3
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 0.0e+00 1283.5 892 74.6
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1282.3 912 74.3
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1282.3 918 72.5
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1282.3 918 72.5
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1280.8 919 72.4
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1280.0 919 74.4
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1277.3 916 73.1
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1276.2 918 73.0
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1275.8 904 73.5
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1265.0 910 72.9
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1261.1 914 73.0
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1260.4 909 72.4
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1260.0 916 72.7
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 0.0e+00 1260.0 966 69.7
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1256.1 923 71.3
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1254.2 925 72.1
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1252.7 920 72.2
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1252.7 919 72.6
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1252.3 908 72.0
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1251.9 909 72.4
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1251.9 909 72.4
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1251.9 921 71.1
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1248.4 913 72.4
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 0.0e+00 1248.0 945 72.2
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1248.0 915 72.0
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1248.0 936 71.3
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1247.6 912 72.5
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1244.6 903 72.0
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1242.3 915 72.0
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1241.5 913 71.3
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1241.1 913 72.0
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1240.7 911 71.0
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1239.2 913 71.9
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1238.8 923 71.1
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1238.4 908 71.3
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1238.0 911 70.9
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1235.3 905 70.9
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1233.8 914 71.3
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1233.0 915 71.3
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1228.0 920 69.3
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1218.4 913 70.4
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1216.1 929 69.1
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1214.5 909 69.7
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1214.5 919 69.7
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1213.7 912 70.3
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1213.4 930 68.9
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1211.1 916 69.8
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1210.3 919 69.0
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1208.7 920 69.7
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 0.0e+00 1208.4 917 70.1
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1208.0 917 69.2
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1206.8 916 69.0
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1203.3 909 69.2
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1203.0 871 73.1
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1201.4 911 70.0
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1199.1 913 69.0
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1198.3 919 69.3
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1196.4 892 70.1
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1187.6 928 68.4
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1186.8 918 68.8
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1185.6 938 67.7
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1185.6 938 67.7
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1182.2 919 68.4
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1182.2 926 69.2
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1180.6 927 68.2
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1178.3 913 69.7
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1176.8 941 66.4
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1173.7 925 68.1
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1173.3 934 67.0
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1173.3 934 67.0
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1172.9 934 66.9
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1170.2 938 66.2
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1168.7 890 70.8
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1166.8 920 67.6
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 0.0e+00 1155.2 936 67.7
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1151.0 912 66.6
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1142.5 956 64.4
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1140.6 923 67.4
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 0.0e+00 1140.6 901 67.8
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 0.0e+00 1136.7 902 69.1
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1128.6 904 66.9
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1126.7 913 66.7
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1120.1 759 75.6
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1099.3 915 64.4
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1097.8 900 64.9
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 6.2e-312 1074.3 918 63.6
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 2.2e-296 1022.3 719 74.0
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 7.0e-290 1000.7 916 59.5
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 2.7e-289 998.8 922 60.3
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 1.9e-279 966.1 760 66.1
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.5e-271 939.9 755 63.8
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 1.0e-269 933.7 955 56.2
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 1.8e-269 932.9 723 67.5
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 3.1e-269 932.2 898 56.7
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.3e-267 926.8 722 67.3
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 3.9e-240 835.5 882 53.1
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 2.5e-223 779.6 541 74.3
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 3.8e-219 765.8 889 52.8
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 1.4e-218 763.8 493 80.9
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.7e-217 759.6 549 73.4
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 2.0e-199 700.3 916 46.3
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.5e-196 690.6 923 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 2.5e-178 630.2 895 42.2
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 5.0e-155 552.7 449 61.0
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 1.7e-142 511.1 354 73.7
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 9.5e-138 495.4 396 66.4
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 5.2e-136 489.6 339 72.6
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 5.8e-119 433.0 307 76.2
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.0e-83 315.8 289 60.9
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 7.2e-77 293.1 349 50.1
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-73 282.3 345 48.1
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 2.6e-71 274.6 355 44.5
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 1.3e-70 272.3 253 65.2
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 3.8e-70 270.8 981 27.7
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 1.6e-68 265.4 344 47.1
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 1.2e-58 232.6 231 58.4
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 6.1e-44 183.7 202 50.5
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 8.0e-44 183.3 123 77.2
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.4e-42 177.9 120 75.8
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 5.8e-42 177.2 297 41.4
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.1e-35 154.8 107 72.9
COL.COLO4_31495 Corchorus olitorius HOM05D003523 ORTHO05D004493 3.5e-31 141.4 87 77.0
COL.COLO4_06329 Corchorus olitorius HOM05D003523 ORTHO05D004493 1.1e-29 136.3 87 74.7
MD05G1316000 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-29 135.2 88 76.1
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 8.3e-25 120.2 57 94.7
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 2.4e-24 118.6 80 71.2
CAN.G330.11 Capsicum annuum HOM05D000087 ORTHO05D115501 3.9e-22 111.3 83 73.5
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 5.6e-21 107.5 70 81.4
Medtr4g010370 Medicago truncatula HOM05D003523 ORTHO05D004493 5.8e-18 97.4 76 60.5
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 1.9e-16 92.4 149 47.0
Lsat_1_v5_gn_7_49460 Lactuca sativa HOM05D002560 ORTHO05D013255 5.4e-16 90.9 48 83.3
arahy.Tifrunner.gnm1.ann1.XFU5ID Arachis hypogaea HOM05D003523 ORTHO05D004493 1.1e-13 83.2 45 80.0
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 7.3e-13 80.5 59 71.2
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 3.6e-12 78.2 61 68.9
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 4.0e-11 74.7 80 52.5
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 4.0e-11 74.7 74 52.7
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 9.0e-11 73.6 52 73.1
Medtr3g057920 Medicago truncatula HOM05D003523 ORTHO05D004493 3.4e-10 71.6 93 44.1
Lsat_1_v5_gn_9_84841 Lactuca sativa HOM05D003523 ORTHO05D000102 4.4e-10 71.2 37 89.2
GSVIVG01004520001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.9e-09 68.6 30 93.3
Lsat_1_v5_gn_1_36880 Lactuca sativa HOM05D003523 ORTHO05D004493 4.2e-08 64.7 35 85.7
Lsat_1_v5_gn_5_151900 Lactuca sativa HOM05D003523 ORTHO05D004493 4.2e-08 64.7 35 85.7
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 5.4e-08 64.3 43 72.1
Dinv40537 Davidia involucrata HOM05D003523 ORTHO05D004493 7.1e-08 63.9 29 93.1
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 7.1e-08 63.9 36 75.0
Lsat_1_v5_gn_6_40740 Lactuca sativa HOM05D000146 ORTHO05D002370 2.7e-07 62.0 33 78.8
Lsat_1_v5_gn_8_41901 Lactuca sativa HOM05D003523 ORTHO05D232231 2.7e-07 62.0 33 78.8
Lsat_1_v5_gn_6_42641 Lactuca sativa HOM05D000146 ORTHO05D002370 3.5e-07 61.6 33 78.8
Psat1g103400 Pisum sativum HOM05D003523 ORTHO05D004493 4.6e-07 61.2 33 72.7
Cpa.g.sc1016.1 Carica papaya HOM05D003523 ORTHO05D004493 6.0e-07 60.8 29 89.7
Lsat_1_v5_gn_9_124840 Lactuca sativa HOM05D003523 ORTHO05D233239 1.0e-06 60.1 33 75.8
Lsat_1_v5_gn_2_131541 Lactuca sativa HOM05D002783 ORTHO05D229066 1.7e-06 59.3 33 72.7
Psat0s3867g0040 Pisum sativum HOM05D002716 ORTHO05D004493 3.9e-06 58.2 33 75.8
Lsat_1_v5_gn_2_57220 Lactuca sativa HOM05D003523 ORTHO05D004493 5.1e-06 57.8 29 89.7
Medtr3g057930 Medicago truncatula HOM05D003523 ORTHO05D259677 5.1e-06 57.8 139 37.4


User provided reference genes

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