Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1116.6 Capsicum annuum HOM05D003042 ORTHO05D003670 1.3e-34 149.1 68 100.0
Nitab4.5_0000078g0100 Nicotiana tabacum HOM05D003042 ORTHO05D003670 1.1e-30 136.0 68 92.6
Nitab4.5_0005663g0040 Nicotiana tabacum HOM05D003042 ORTHO05D003670 1.1e-30 136.0 68 92.6
CSS0010904 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 5.5e-30 133.7 68 88.2
CSS0033117 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 5.5e-30 133.7 68 88.2
Solyc10g047000.2 Solanum lycopersicum HOM05D003042 ORTHO05D003670 7.2e-30 133.3 68 91.2
Sopen10g016960 Solanum pennellii HOM05D003042 ORTHO05D003670 7.2e-30 133.3 68 91.2
CSS0003437 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 2.1e-29 131.7 66 84.8
Thecc.06G038500 Theobroma cacao HOM05D003042 ORTHO05D003670 1.0e-28 129.4 68 85.3
Atru.chr10.2391 Acer truncatum HOM05D003042 ORTHO05D003670 1.8e-28 128.6 68 83.8
HanXRQChr17g0547761 Helianthus annuus HOM05D003042 ORTHO05D003670 1.8e-28 128.6 68 86.8
EL10Ac8g19347 Beta vulgaris HOM05D003042 ORTHO05D003670 2.3e-28 128.3 66 81.8
Gohir.A05G120500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 3.0e-28 127.9 68 83.8
Gohir.D05G121500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 3.0e-28 127.9 68 83.8
Gorai.009G125000 Gossypium raimondii HOM05D003042 ORTHO05D003670 3.0e-28 127.9 68 83.8
Hma1.2p1_1341F.1_g276910 Hydrangea macrophylla HOM05D003042 ORTHO05D003670 3.0e-28 127.9 66 83.3
Sabra03G0131800 Salix brachista HOM05D003042 ORTHO05D003670 3.0e-28 127.9 66 81.8
Lalb_Chr25g0279011 Lupinus albus HOM05D003042 ORTHO05D003670 3.9e-28 127.5 61 90.2
Duzib160G0927 Durio zibethinus HOM05D003042 ORTHO05D003670 6.7e-28 126.7 68 82.4
Lj9A319T64 Lonicera japonica HOM05D003042 ORTHO05D003670 6.7e-28 126.7 61 88.5
Lj3g0027683 Lotus japonicus HOM05D003042 ORTHO05D003670 6.7e-28 126.7 66 83.3
Nn5g28955 Nelumbo nucifera HOM05D003042 ORTHO05D003670 6.7e-28 126.7 68 83.8
Lsat_1_v5_gn_7_79840 Lactuca sativa HOM05D003042 ORTHO05D003670 8.8e-28 126.3 68 83.8
Lalb_Chr04g0264341 Lupinus albus HOM05D003042 ORTHO05D003670 8.8e-28 126.3 66 81.8
Sabra01G0033300 Salix brachista HOM05D003042 ORTHO05D003670 8.8e-28 126.3 64 82.8
TAR376G0906 Trochodendron aralioides HOM05D003042 ORTHO05D003670 8.8e-28 126.3 66 78.8
Ca_10499_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 1.1e-27 125.9 66 83.3
Potri.003G180000 Populus trichocarpa HOM05D003042 ORTHO05D003670 1.1e-27 125.9 66 81.8
GSVIVG01029758001 Vitis vinifera HOM05D003042 ORTHO05D003670 1.1e-27 125.9 68 82.4
Ciclev10025978m.g Citrus clementina HOM05D003042 ORTHO05D003670 1.5e-27 125.6 68 82.4
Eucgr.J03099 Eucalyptus grandis HOM05D003042 ORTHO05D003670 1.5e-27 125.6 68 80.9
Medtr2g008410 Medicago truncatula HOM05D003042 ORTHO05D003670 1.5e-27 125.6 66 80.3
Medtr8g068875 Medicago truncatula HOM05D003042 ORTHO05D003670 1.5e-27 125.6 66 80.3
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 1.5e-27 125.6 68 85.3
TPR.G13617 Trifolium pratense HOM05D003042 ORTHO05D003670 1.5e-27 125.6 63 85.7
TWI12G0856 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 1.5e-27 125.6 68 85.3
Actinidia00254 Actinidia chinensis HOM05D003042 ORTHO05D003670 2.0e-27 125.2 68 83.8
Actinidia38973 Actinidia chinensis HOM05D003042 ORTHO05D003670 2.0e-27 125.2 68 83.8
CDE10G1274 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 2.0e-27 125.2 68 82.4
Eucgr.I02689 Eucalyptus grandis HOM05D003042 ORTHO05D003670 2.0e-27 125.2 68 80.9
Glyma.01G067900 Glycine max HOM05D003042 ORTHO05D003670 2.0e-27 125.2 66 80.3
Glyma.02G124400 Glycine max HOM05D003042 ORTHO05D003670 2.0e-27 125.2 66 80.3
Lj6g0022000 Lotus japonicus HOM05D003042 ORTHO05D003670 2.0e-27 125.2 66 81.8
GSVIVG01017573001 Vitis vinifera HOM05D003042 ORTHO05D003670 2.0e-27 125.2 68 82.4
Duzib192G0087 Durio zibethinus HOM05D003042 ORTHO05D003670 2.6e-27 124.8 68 83.8
Phvul.003G032400 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 2.6e-27 124.8 66 80.3
Potri.001G048100 Populus trichocarpa HOM05D003042 ORTHO05D003670 2.6e-27 124.8 66 78.8
MSTRG.16568 Avicennia marina HOM05D003042 ORTHO05D003670 3.3e-27 124.4 68 80.9
DCAR_021842 Daucus carota HOM05D003042 ORTHO05D003670 3.3e-27 124.4 66 81.8
Duzib248G0201 Durio zibethinus HOM05D003042 ORTHO05D003670 3.3e-27 124.4 68 80.9
SGA_v2.0_scaffold45G17302 Striga asiatica HOM05D003042 ORTHO05D003670 3.3e-27 124.4 68 80.9
Thecc.02G142800 Theobroma cacao HOM05D003042 ORTHO05D003670 3.3e-27 124.4 68 82.4
Dinv09049 Davidia involucrata HOM05D003042 ORTHO05D003670 4.4e-27 124.0 68 82.4
HanXRQChr03g0067001 Helianthus annuus HOM05D003042 ORTHO05D003670 4.4e-27 124.0 61 88.5
Manes.04G104800 Manihot esculenta HOM05D003042 ORTHO05D003670 4.4e-27 124.0 68 80.9
Oeu047378.2 Olea europaea HOM05D003042 ORTHO05D003670 4.4e-27 124.0 66 80.3
TWI14G0651 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 4.4e-27 124.0 65 78.5
Cpa.g.sc10.109 Carica papaya HOM05D003042 ORTHO05D003670 5.7e-27 123.6 66 78.8
PGR142G0215 Punica granatum HOM05D003042 ORTHO05D003670 5.7e-27 123.6 68 77.9
SGA_v2.0_scaffold60G20842 Striga asiatica HOM05D003042 ORTHO05D003670 5.7e-27 123.6 63 82.5
CANSAT54G0208 Cannabis sativa HOM05D003042 ORTHO05D003670 7.4e-27 123.2 66 77.3
MELO3C022166.2 Cucumis melo HOM05D003042 ORTHO05D003670 7.4e-27 123.2 66 78.8
CsaV3_5G039870 Cucumis sativus L. HOM05D003042 ORTHO05D003670 7.4e-27 123.2 66 78.8
Psat0s1783g0040 Pisum sativum HOM05D003042 ORTHO05D003670 7.4e-27 123.2 66 80.3
AUR62031295 Chenopodium quinoa HOM05D003042 ORTHO05D003670 9.7e-27 122.9 66 78.8
Psat6g176840 Pisum sativum HOM05D003042 ORTHO05D003670 9.7e-27 122.9 66 80.3
MD08G1221600 Malus domestica HOM05D003042 ORTHO05D003670 1.3e-26 122.5 60 86.7
Sed0018036 Sechium edule HOM05D003042 ORTHO05D003670 1.3e-26 122.5 68 82.4
Aqoxy6G00507 Aquilegia oxysepala HOM05D003042 ORTHO05D003670 2.2e-26 121.7 66 78.8
AUR62027381 Chenopodium quinoa HOM05D003042 ORTHO05D003670 2.2e-26 121.7 66 77.3
FvH4_5g30850 Fragaria vesca HOM05D003042 ORTHO05D003670 2.2e-26 121.7 60 86.7
FAN04G2863 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.2e-26 121.7 60 86.7
FAN13G0196 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.2e-26 121.7 60 86.7
QL11p019654 Quercus lobata HOM05D003042 ORTHO05D003670 2.2e-26 121.7 66 78.8
SHI11255 Sapria himalayana HOM05D003042 ORTHO05D003670 2.2e-26 121.7 68 80.9
ECA240G1546 Erigeron canadensis HOM05D003042 ORTHO05D003670 2.8e-26 121.3 61 86.9
SalBow5G3148 Salvia bowleyana HOM05D003042 ORTHO05D003670 3.7e-26 120.9 68 80.9
arahy.Tifrunner.gnm1.ann1.KZIJ4I Arachis hypogaea HOM05D003042 ORTHO05D003670 4.8e-26 120.6 66 75.8
arahy.Tifrunner.gnm1.ann1.QL4S9I Arachis hypogaea HOM05D003042 ORTHO05D003670 4.8e-26 120.6 66 75.8
Ca_00120_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 4.8e-26 120.6 66 80.3
ECA236G1689 Erigeron canadensis HOM05D003042 ORTHO05D003670 4.8e-26 120.6 66 77.3
Lsat_1_v5_gn_9_117540 Lactuca sativa HOM05D003042 ORTHO05D003670 4.8e-26 120.6 61 85.2
RcHm_v2.0_Chr7g0225991 Rosa chinensis HOM05D003042 ORTHO05D003670 4.8e-26 120.6 60 85.0
ATR0564G171 Amborella trichopoda HOM05D003042 ORTHO05D003670 6.3e-26 120.2 68 79.4
COL.COLO4_26659 Corchorus olitorius HOM05D003042 ORTHO05D003670 6.3e-26 120.2 68 77.9
Eucgr.J03097 Eucalyptus grandis HOM05D003042 ORTHO05D003670 6.3e-26 120.2 66 78.8
Glyma.15G051700 Glycine max HOM05D003042 ORTHO05D003670 6.3e-26 120.2 66 77.3
Prupe.1G558700 Prunus persica HOM05D003042 ORTHO05D003670 6.3e-26 120.2 66 75.8
TPR.G2525 Trifolium pratense HOM05D003042 ORTHO05D003670 6.3e-26 120.2 59 84.7
arahy.Tifrunner.gnm1.ann1.50NPKB Arachis hypogaea HOM05D003042 ORTHO05D003670 8.2e-26 119.8 68 79.4
arahy.Tifrunner.gnm1.ann1.HI3N32 Arachis hypogaea HOM05D003042 ORTHO05D003670 8.2e-26 119.8 68 79.4
Prupe.7G019500 Prunus persica HOM05D003042 ORTHO05D003670 8.2e-26 119.8 66 75.8
Haze_13445 Corylus avellana HOM05D003042 ORTHO05D003670 1.1e-25 119.4 61 78.7
Haze_13447 Corylus avellana HOM05D003042 ORTHO05D003670 1.1e-25 119.4 61 78.7
Migut.B00632 Erythranthe guttata HOM05D003042 ORTHO05D003670 1.1e-25 119.4 68 80.9
PSO541G5257 Papaver somniferum HOM05D003042 ORTHO05D003670 1.1e-25 119.4 61 82.0
PSO675G4282 Papaver somniferum HOM05D003042 ORTHO05D003670 1.1e-25 119.4 61 82.0
MD15G1412500 Malus domestica HOM05D003042 ORTHO05D003670 1.4e-25 119.0 60 85.0
Phvul.006G208000 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 1.4e-25 119.0 66 75.8
AT1G80670 Arabidopsis thaliana HOM05D003042 ORTHO05D003670 1.8e-25 118.6 66 74.2
Lj2g0012532 Lotus japonicus HOM05D003042 ORTHO05D003670 1.8e-25 118.6 66 74.2
FvH4_1g21750 Fragaria vesca HOM05D003042 ORTHO05D003670 2.4e-25 118.2 68 77.9
FAN28G0628 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.4e-25 118.2 68 77.9
Glyma.08G180700 Glycine max HOM05D003042 ORTHO05D003670 2.4e-25 118.2 66 75.8
Carub.0002s2689 Capsella rubella HOM05D003042 ORTHO05D003670 3.1e-25 117.9 66 74.2
FAN23G0925 Fragaria x ananassa HOM05D003042 ORTHO05D003670 3.1e-25 117.9 68 76.5
QL05p034606 Quercus lobata HOM05D003042 ORTHO05D003670 3.1e-25 117.9 67 79.1
QL05p034855 Quercus lobata HOM05D003042 ORTHO05D003670 3.1e-25 117.9 67 79.1
AL2G40770 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 4.1e-25 117.5 66 72.7
DCAR_001799 Daucus carota HOM05D003042 ORTHO05D003670 4.1e-25 117.5 60 85.0
VMungo0540G1529 Vigna mungo HOM05D003042 ORTHO05D003670 4.1e-25 117.5 66 75.8
BolC6t40401H Brassica oleracea HOM05D003042 ORTHO05D003670 5.3e-25 117.1 62 79.0
CiPaw.01G252700 Carya illinoinensis HOM05D003042 ORTHO05D003670 5.3e-25 117.1 60 78.3
CiPaw.15G089000 Carya illinoinensis HOM05D003042 ORTHO05D003670 5.3e-25 117.1 60 78.3
RcHm_v2.0_Chr7g0188071 Rosa chinensis HOM05D003042 ORTHO05D003670 5.3e-25 117.1 62 79.0
Hund30862 Selenicereus undatus HOM05D003042 ORTHO05D003670 5.3e-25 117.1 66 72.7
Medtr1g492860 Medicago truncatula HOM05D003042 ORTHO05D003670 7.0e-25 116.7 68 72.1
Cc02_g21810 Coffea canephora HOM05D003042 ORTHO05D003670 9.1e-25 116.3 68 77.9
FAN26G0050 Fragaria x ananassa HOM05D003042 ORTHO05D003670 9.1e-25 116.3 68 76.5
A02p23240 Brassica napus HOM05D003042 ORTHO05D003670 1.2e-24 115.9 60 81.7
A07p45040 Brassica napus HOM05D003042 ORTHO05D003670 1.2e-24 115.9 68 76.5
C02p37000 Brassica napus HOM05D003042 ORTHO05D003670 1.2e-24 115.9 60 81.7
C06p53860 Brassica napus HOM05D003042 ORTHO05D003670 1.2e-24 115.9 68 76.5
BolC2t09716H Brassica oleracea HOM05D003042 ORTHO05D003670 1.2e-24 115.9 60 81.7
BraA02t07322Z Brassica rapa HOM05D003042 ORTHO05D003670 1.2e-24 115.9 60 81.7
BraA07t32007Z Brassica rapa HOM05D003042 ORTHO05D003670 1.2e-24 115.9 68 76.5
Cfa001896 Carpinus fangiana HOM05D003042 ORTHO05D003670 1.6e-24 115.5 60 76.7
RcHm_v2.0_Chr2g0115621 Rosa chinensis HOM05D003042 ORTHO05D003670 1.6e-24 115.5 68 75.0
THA.LOC104813581 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 1.6e-24 115.5 66 72.7
Prupe.5G049100 Prunus persica HOM05D003042 ORTHO05D003670 2.0e-24 115.2 66 72.7
Thhalv10018796m.g Eutrema salsugineum HOM05D003042 ORTHO05D003670 2.6e-24 114.8 60 80.0
Os08g0176800 Oryza sativa ssp. japonica HOM05D003042 ORTHO05D003670 2.6e-24 114.8 67 79.1
Sp5g35090 Schrenkiella parvula HOM05D003042 ORTHO05D003670 2.6e-24 114.8 60 80.0
TPR.G2563 Trifolium pratense HOM05D003042 ORTHO05D003670 2.6e-24 114.8 59 79.7
unitig_748.g7493 Utricularia gibba HOM05D003042 ORTHO05D003670 2.6e-24 114.8 68 77.9
MSTRG.27785 Avicennia marina HOM05D003042 ORTHO05D003670 5.9e-24 113.6 68 73.5
TAR381G1117 Trochodendron aralioides HOM05D003042 ORTHO05D003670 5.9e-24 113.6 68 76.5
PGR031G1207 Punica granatum HOM05D003042 ORTHO05D003670 1.3e-23 112.5 68 73.5
BcaC08g45331 Brassica carinata HOM05D003042 ORTHO05D003670 1.7e-23 112.1 68 73.5
A07p26780 Brassica napus HOM05D003042 ORTHO05D003670 1.7e-23 112.1 68 73.5
C06p29410 Brassica napus HOM05D003042 ORTHO05D003670 1.7e-23 112.1 68 73.5
BolC6t38106H Brassica oleracea HOM05D003042 ORTHO05D003670 1.7e-23 112.1 68 73.5
Migut.N01008 Erythranthe guttata HOM05D003042 ORTHO05D003670 2.2e-23 111.7 68 76.5
BraA07t30321Z Brassica rapa HOM05D003042 ORTHO05D003670 3.8e-23 110.9 68 72.1
Zm00001eb412490 Zea mays HOM05D003042 ORTHO05D003670 5.0e-23 110.5 59 79.7
COL.COLO4_00107 Corchorus olitorius HOM05D003042 ORTHO05D003670 6.5e-23 110.2 59 78.0
FvH4_5g10180 Fragaria vesca HOM05D003042 ORTHO05D003670 6.5e-23 110.2 62 74.2
FAN13G0324 Fragaria x ananassa HOM05D003042 ORTHO05D003670 6.5e-23 110.2 62 74.2
FAN18G2061 Fragaria x ananassa HOM05D003042 ORTHO05D003670 6.5e-23 110.2 62 74.2
Lj5C242G9 Lonicera japonica HOM05D003042 ORTHO05D003670 6.5e-23 110.2 60 80.0
BcaB02g07258 Brassica carinata HOM05D003042 ORTHO05D003670 8.5e-23 109.8 60 76.7
EL10Ac9g22228 Beta vulgaris HOM05D003042 ORTHO05D003670 1.1e-22 109.4 63 74.6
FAN08G0173 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.1e-22 109.4 62 74.2
THA.LOC104812445 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 1.9e-22 108.6 66 69.7
CARHR073850 Cardamine hirsuta HOM05D003042 ORTHO05D003670 2.5e-22 108.2 60 75.0
Zm00001eb158970 Zea mays HOM05D003042 ORTHO05D003670 3.2e-22 107.8 60 78.3
CDE10G1271 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 5.5e-22 107.1 50 90.0
ClCG08G001160 Citrullus lanatus HOM05D003042 ORTHO05D003670 7.2e-22 106.7 95 53.7
CBR_g29549 Chara braunii HOM05D003042 ORTHO05D003670 1.2e-21 105.9 66 69.7
Ciclev10027544m.g Citrus clementina HOM05D003042 ORTHO05D009775 1.2e-21 105.9 67 68.7
SEGI_40585 Sequoiadendron giganteum HOM05D003042 ORTHO05D003670 1.6e-21 105.5 60 75.0
Os01g0635400 Oryza sativa ssp. japonica HOM05D003042 ORTHO05D003670 8.0e-21 103.2 59 74.6
FAN18G0772 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.4e-20 102.4 55 76.4
Psat1g218040 Pisum sativum HOM05D003042 ORTHO05D003670 1.4e-20 102.4 50 84.0
HPP92_002339 Vanilla planifolia HOM05D003042 ORTHO05D003670 3.0e-20 101.3 50 86.0
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 6.8e-20 100.1 50 84.0
Oeu050879.1 Olea europaea HOM05D000472 ORTHO05D000344 8.8e-20 99.8 66 66.7
Hund12660 Selenicereus undatus HOM05D003042 ORTHO05D033795 8.8e-20 99.8 83 55.4
Mapoly0084s0068 Marchantia polymorpha HOM05D003042 ORTHO05D003670 1.2e-19 99.4 68 66.2
Pp3c18_21020 Physcomitrium patens HOM05D003042 ORTHO05D003670 1.2e-19 99.4 66 63.6
Ah.01g006780 Amaranthus hybridus HOM05D000263 ORTHO05D000213 4.4e-19 97.4 52 82.7
FAN04G1953 Fragaria x ananassa HOM05D003042 ORTHO05D003670 7.5e-19 96.7 75 61.3
AL1G28010 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 6.3e-18 93.6 57 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2566 Anthoceros agrestis HOM05D003042 ORTHO05D003670 3.1e-17 91.3 66 59.1
Oeu037194.1 Olea europaea HOM05D003280 ORTHO05D009775 5.3e-17 90.5 50 78.0
CBR_g32085 Chara braunii HOM05D003042 ORTHO05D003670 9.1e-17 89.7 51 72.5
PSO675G1797 Papaver somniferum HOM05D003042 ORTHO05D003670 3.5e-16 87.8 66 60.6
PRCOL_00006870 Prasinoderma coloniale HOM05D003042 ORTHO05D003670 1.5e-14 82.4 59 57.6
BraA09t38506Z Brassica rapa HOM05D003042 ORTHO05D033795 3.2e-14 81.3 44 79.5
SMO147G0311 Selaginella moellendorffii HOM05D003042 ORTHO05D003670 3.2e-14 81.3 64 57.8
Hund12671 Selenicereus undatus HOM05D003042 ORTHO05D003670 5.5e-14 80.5 54 63.0
Haze_16644 Corylus avellana HOM05D003042 ORTHO05D003670 3.6e-13 77.8 40 75.0
MCO09G525 Micromonas commoda HOM05D003042 ORTHO05D003670 1.8e-12 75.5 58 55.2
FAN19G2892 Fragaria x ananassa HOM05D003042 ORTHO05D003670 4.0e-12 74.3 45 73.3
Pp3c19_2820 Physcomitrium patens HOM05D003042 ORTHO05D003670 5.7e-11 70.5 68 50.0
Cre06.g278097 Chlamydomonas reinhardtii HOM05D003042 ORTHO05D003670 4.8e-10 67.4 53 54.7
CARHR016370 Cardamine hirsuta HOM05D003042 ORTHO05D003670 7.2e-06 53.5 41 56.1


User provided reference genes

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