Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 2610.9 1317 100.0
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 2456.4 1317 93.3
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 2441.4 1317 92.6
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 2372.8 1339 89.0
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 2353.2 1314 90.0
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 2325.1 1317 87.9
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 2313.9 1240 93.3
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1856.6 1327 70.3
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1830.8 1329 69.4
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1820.8 1325 69.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1763.4 1280 69.5
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1758.4 1328 68.2
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1752.6 1329 66.8
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1751.1 1321 66.9
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1739.5 1326 65.9
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1729.9 1325 66.5
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1726.8 1325 65.8
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1726.5 1327 66.4
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1709.1 1327 66.1
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1705.3 1326 66.3
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1700.3 1324 65.0
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1698.3 1325 65.2
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1694.9 1323 64.6
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1693.7 1269 67.8
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1690.6 1244 69.2
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1689.5 1327 65.4
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1687.5 1325 64.5
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1681.8 1326 64.3
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1680.6 1327 64.2
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1680.2 1330 62.9
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1677.9 1327 64.2
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1677.1 1327 64.1
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1674.8 1327 65.0
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1669.4 1327 63.8
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1668.7 1322 64.1
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1668.3 1335 63.3
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1668.3 1322 64.4
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1666.0 1328 63.7
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1659.8 1329 62.9
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1656.7 1334 63.3
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1655.2 1325 63.8
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1645.2 1326 63.3
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1323 62.6
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1643.6 1325 63.7
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1642.5 1336 63.6
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1637.5 1324 63.9
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1634.8 1322 62.8
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1622.4 1244 65.1
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1622.1 1242 66.6
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1619.8 1329 61.9
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1619.0 1340 62.0
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1619.0 1326 62.7
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1618.6 1330 62.1
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1617.8 1334 61.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1612.0 1323 63.0
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1607.4 1321 62.0
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1602.8 1327 62.3
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1602.0 1329 61.0
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1595.9 1324 62.1
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1592.0 1324 61.8
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1591.2 1328 61.7
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1588.5 1253 64.0
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1581.6 1319 61.4
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1576.6 1328 61.2
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1574.3 1326 61.2
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1573.5 1326 60.3
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1568.1 1315 61.8
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1563.5 1255 63.5
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1561.6 1324 61.6
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1552.0 1323 60.6
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1541.2 1282 63.9
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1515.4 1190 64.5
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1498.8 1094 69.7
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1491.5 1330 58.1
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1490.3 1328 58.4
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1489.2 1329 58.2
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1486.9 1326 58.4
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1486.9 1329 58.2
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1484.5 1329 58.0
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1482.2 1561 52.4
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1481.5 1332 57.9
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1478.8 1332 58.2
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1471.1 1101 67.3
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1469.1 1333 57.4
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1453.0 1355 55.7
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1420.2 1341 54.1
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1402.5 1327 56.0
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1392.9 1132 61.8
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1378.6 1331 53.1
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1375.5 1108 62.6
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1354.7 1344 53.6
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1346.3 1091 62.4
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1337.0 1318 53.9
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1330.5 1154 59.9
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1312.7 1320 55.0
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1211.1 839 72.6
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1182.5 943 63.4
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1176.0 1335 49.9
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1121.7 1272 48.1
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1118.2 754 74.5
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1094.0 903 62.0
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 1.3e-255 887.5 1370 39.2
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 4.1e-254 882.5 849 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 1.7e-239 833.9 1197 41.4
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.1e-232 811.2 1300 38.5
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 5.3e-230 802.4 1155 41.1
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.0e-212 742.7 803 50.7
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.4e-166 591.7 1574 30.1
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 5.5e-142 510.0 462 59.7
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 2.2e-135 488.0 356 68.8
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 1.2e-128 465.7 377 59.7
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 7.3e-94 350.1 314 60.2
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 4.1e-89 334.3 1380 26.2
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.2e-75 289.7 1557 24.2
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 3.7e-74 284.6 250 56.0
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 6.0e-72 277.3 196 75.0
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 2.4e-60 238.8 1353 23.9
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 3.8e-58 231.5 304 45.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.6e-56 226.1 167 73.1
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 9.9e-51 206.8 1367 25.2
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 5.3e-44 184.5 138 71.0
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.9e-41 176.0 130 71.5
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.6e-40 171.4 235 42.1
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.4e-36 159.1 256 38.7
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 4.2e-33 148.3 136 58.8
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 5.1e-31 141.4 289 37.0


User provided reference genes

Program Settings