Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 0.0e+00 2001.5 1000 100.0
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 0.0e+00 1446.8 1022 74.9
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 0.0e+00 1423.7 1038 72.4
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 0.0e+00 1398.3 1024 72.7
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 0.0e+00 1204.5 1029 64.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 0.0e+00 1090.1 1018 60.4
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 4.3e-256 888.6 649 72.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 6.4e-175 619.0 1078 38.8
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.4e-174 617.1 1079 39.0
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.9e-171 607.4 1041 38.6
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.3e-164 584.7 1068 39.0
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.2e-161 572.8 1075 36.5
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 4.9e-159 566.2 1165 35.6
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.2e-151 540.8 1102 35.7
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.1e-150 538.5 1143 34.9
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.0e-148 531.9 1074 36.5
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.0e-148 530.4 1091 35.1
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 6.6e-148 529.3 1098 35.0
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 4.7e-146 523.1 1064 34.8
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.1e-145 520.4 1080 35.2
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 6.9e-145 519.2 1101 33.9
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.9e-145 519.2 1071 35.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.4e-142 511.5 1099 32.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.5e-141 506.9 1030 35.9
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.1e-139 501.9 1057 35.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 4.3e-139 500.0 1082 34.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.8e-138 497.3 1045 34.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 3.1e-137 493.8 1079 33.5
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 6.9e-137 492.7 1033 35.5
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.4e-136 490.3 1038 33.9
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 7.6e-136 489.2 1106 33.5
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.3e-135 488.4 1090 33.9
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.7e-135 488.0 1065 34.3
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.0e-133 479.6 561 52.6
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.3e-132 478.4 1089 32.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.9e-131 474.6 1070 33.4
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.6e-131 473.0 1071 34.6
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 8.4e-127 459.1 1045 34.0
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 7.1e-126 456.1 1097 32.9
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 5.6e-123 446.4 1033 33.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.4e-123 446.0 1154 32.2
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.8e-121 441.4 1046 31.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.5e-120 436.8 471 56.7
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.6e-120 436.0 1173 31.0
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.3e-119 435.3 1052 34.4
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.7e-119 434.9 1069 32.4
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.5e-118 431.0 1074 31.1
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 2.5e-118 431.0 1052 33.3
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-117 428.7 1081 31.2
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.1e-117 427.9 1086 32.1
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.1e-117 427.9 971 33.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.7e-117 427.6 1059 31.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.5e-117 427.2 1150 32.2
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.3e-116 425.2 1078 32.0
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.3e-114 418.7 1120 31.2
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.8e-114 416.8 1118 31.6
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.4e-113 415.2 1062 31.6
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.4e-113 414.5 1071 31.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 9.0e-113 412.5 1049 31.9
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.2e-110 403.7 1099 31.1
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.5e-110 403.3 1008 32.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.4e-108 398.7 1008 32.1
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.4e-108 398.7 1050 30.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 6.7e-108 396.4 1079 30.4
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 1.1e-107 395.6 1012 32.3
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.5e-107 395.2 1089 31.7
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.0e-107 394.8 1080 31.0
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.3e-107 393.7 1068 31.5
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 4.8e-106 390.2 1167 32.1
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 5.0e-103 380.2 498 45.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 4.7e-101 373.6 1019 31.2
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 6.1e-101 373.2 1061 30.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.3e-99 367.5 887 31.9
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 9.7e-99 365.9 810 35.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 9.7e-99 365.9 1022 30.2
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.0e-95 353.6 1051 30.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 8.5e-95 352.8 1026 30.1
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 3.0e-92 344.4 1054 30.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.3e-91 340.9 1015 31.2
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 7.4e-91 339.7 1007 30.1
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.2e-90 338.2 981 30.6
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 8.5e-87 326.2 1016 29.2
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.9e-86 325.1 663 36.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.8e-84 318.5 1016 30.0
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.8e-82 311.2 1062 28.3
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.1e-81 307.8 767 32.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 8.8e-76 289.7 825 30.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 6.3e-74 283.5 701 31.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.2e-72 279.3 866 29.9
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.0e-72 278.5 866 29.9
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.7e-72 278.1 865 29.9
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.0e-71 273.9 810 30.4
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 6.6e-71 273.5 810 30.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 6.6e-71 273.5 1028 28.3
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 8.0e-69 266.5 669 32.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.3e-63 249.2 1009 27.9
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 4.0e-60 237.7 1082 25.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-59 236.1 173 71.7
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.6e-55 219.9 320 42.5
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-54 219.2 983 26.7
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 7.3e-54 216.9 438 34.9
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-52 212.6 536 32.3
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.8e-52 212.2 248 49.2
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 4.6e-48 197.6 1007 25.7
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 6.6e-47 193.7 295 38.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.1e-46 193.0 891 25.9
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 5.8e-43 180.6 472 31.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 5.8e-43 180.6 520 30.8
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.7e-42 179.1 662 26.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.6e-40 171.0 558 29.0
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.3e-39 169.5 318 34.0
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.6e-37 162.5 208 45.2
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.9e-36 156.8 133 58.6
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.5e-35 156.0 764 26.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.7e-34 152.5 191 48.2
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.2e-34 152.1 149 53.7
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 6.4e-34 150.6 200 45.0
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.4e-33 149.4 698 25.8
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.4e-33 148.7 195 45.1
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.2e-32 146.4 113 61.1
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.1e-32 145.6 718 23.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.5e-30 139.4 755 25.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 4.3e-30 137.9 725 25.0
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.3e-29 136.3 725 24.7
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.4e-27 128.3 726 23.8
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.7e-26 125.9 714 25.1
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.2e-26 125.6 129 48.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.0e-23 115.2 304 29.9
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 9.6e-22 110.2 713 23.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.8e-20 105.9 131 45.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 4.0e-20 104.8 972 22.4
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.9e-18 98.6 317 25.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.4e-17 94.4 393 23.9
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 7.1e-17 94.0 81 55.6
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 4.6e-16 91.3 501 24.4
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 3.0e-15 88.6 74 56.8
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 3.9e-15 88.2 138 39.9
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 9.6e-14 83.6 393 27.0
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 5.3e-12 77.8 88 47.7
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-10 73.6 425 24.5
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.1e-09 70.1 284 27.1
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 9.3e-09 67.0 63 49.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.6e-08 66.2 63 49.2
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.5e-06 59.7 479 21.3


User provided reference genes

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