Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.8e-112 408.7 211 100.0
A03p12170 Brassica napus HOM05D022734 ORTHO05D024517 6.9e-39 164.9 99 83.8
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 4.3e-33 145.6 82 93.9
BraA08t32119Z Brassica rapa HOM05D022734 ORTHO05D024517 1.3e-32 144.1 88 83.0
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.2e-22 110.9 75 77.3
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 2.0e-22 110.2 74 77.0
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 5.9e-22 108.6 73 78.1
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 5.9e-22 108.6 73 78.1
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 5.9e-22 108.6 73 78.1
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 7.7e-22 108.2 72 79.2
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.8e-21 105.9 74 73.0
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.8e-21 105.9 74 73.0
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 3.8e-21 105.9 74 73.0
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.9e-20 103.6 73 72.6
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.9e-20 103.6 74 73.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 5.5e-20 102.1 67 79.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 5.5e-20 102.1 75 70.7
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.1e-19 100.1 90 58.9
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.1e-19 100.1 75 66.7
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.7e-19 99.8 75 68.0
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.6e-19 99.4 75 68.0
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.6e-19 99.4 75 68.0
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 4.7e-19 99.0 75 68.0
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 6.1e-19 98.6 75 66.7
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 8.0e-19 98.2 72 69.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.0e-18 97.8 75 66.7
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.4e-18 97.4 75 68.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.8e-18 97.1 71 70.4
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.0e-18 96.3 66 74.2
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.0e-18 96.3 66 74.2
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 4.0e-18 95.9 75 68.0
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 6.7e-18 95.1 82 61.0
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 6.7e-18 95.1 71 69.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 8.8e-18 94.7 67 71.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 8.8e-18 94.7 72 68.1
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 8.8e-18 94.7 75 64.0
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.1e-17 94.4 71 67.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.1e-17 94.4 67 71.6
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.1e-17 94.4 67 71.6
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.5e-17 94.0 67 70.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.5e-17 94.0 73 67.1
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.5e-17 94.0 67 71.6
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.5e-17 94.0 67 70.1
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 2.0e-17 93.6 67 70.1
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.6e-17 93.2 67 71.6
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.6e-17 93.2 67 71.6
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 2.6e-17 93.2 64 73.4
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.6e-17 93.2 67 71.6
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 2.6e-17 93.2 67 70.1
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 2.6e-17 93.2 64 73.4
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.3e-17 92.8 85 61.2
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 5.7e-17 92.0 67 67.2
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 5.7e-17 92.0 71 67.6
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 5.7e-17 92.0 74 66.2
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 7.5e-17 91.7 71 66.2
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 7.5e-17 91.7 75 64.0
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 7.5e-17 91.7 71 66.2
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 9.7e-17 91.3 63 73.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 9.7e-17 91.3 69 68.1
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 9.7e-17 91.3 69 68.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 9.7e-17 91.3 69 68.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.3e-16 90.9 67 68.7
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.7e-16 90.5 73 63.0
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.7e-16 90.5 67 68.7
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.7e-16 90.5 63 73.0
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.2e-16 90.1 97 59.8
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.2e-16 90.1 97 59.8
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.8e-16 89.7 67 67.2
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.8e-16 89.7 73 67.1
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.8e-16 89.7 73 67.1
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.7e-16 89.4 104 50.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.8e-16 89.0 62 72.6
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 4.8e-16 89.0 67 67.2
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 4.8e-16 89.0 62 72.6
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 6.3e-16 88.6 69 65.2
A04p21530 Brassica napus HOM05D005846 ORTHO05D007369 8.2e-16 88.2 48 97.9
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 8.2e-16 88.2 66 66.7
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.1e-15 87.8 66 69.7
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-15 87.8 100 51.0
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.1e-15 87.8 61 73.8
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.4e-15 87.4 66 68.2
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.4e-15 87.4 76 57.9
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.8e-15 87.0 76 60.5
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.8e-15 87.0 73 64.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.8e-15 87.0 63 71.4
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.4e-15 86.7 73 64.4
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 2.4e-15 86.7 64 70.3
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 3.1e-15 86.3 84 58.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 3.1e-15 86.3 66 65.2
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 5.3e-15 85.5 70 60.0
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 7.0e-15 85.1 69 65.2
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.0e-15 85.1 63 68.3
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 9.1e-15 84.7 67 64.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.6e-14 84.0 68 64.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.6e-14 84.0 63 66.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.6e-14 84.0 63 66.7
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 5.9e-14 82.0 74 58.1
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.3e-13 80.9 66 65.2
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.7e-13 80.5 70 60.0
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-13 80.5 63 66.7
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.0e-13 79.0 56 69.6
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.0e-13 79.0 76 57.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.9e-12 77.0 72 54.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 7.2e-12 75.1 75 52.0
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 9.4e-12 74.7 59 64.4
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.7e-11 73.2 66 57.6
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 3.6e-11 72.8 54 61.1
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 6.1e-11 72.0 47 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 5.2e-10 68.9 103 42.7
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 5.2e-10 68.9 64 50.0
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.2e-09 67.8 66 53.0
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.5e-09 67.4 47 68.1
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 2.6e-09 66.6 46 67.4
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.4e-09 65.9 45 66.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 5.7e-09 65.5 47 66.0
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 7.5e-09 65.1 43 69.8
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 9.8e-09 64.7 46 71.7
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 9.8e-09 64.7 57 56.1
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 8.3e-08 61.6 65 55.4
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 4.1e-07 59.3 29 93.1
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 4.5e-06 55.8 55 49.1


User provided reference genes

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