Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 4.3e-25 117.1 55 100.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 2.3e-18 94.7 85 62.4
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.0e-13 79.3 82 54.9
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.2e-13 78.2 81 55.6
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 2.2e-13 78.2 81 55.6
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 5.0e-13 77.0 81 54.3
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 8.4e-13 76.3 81 54.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 1.1e-12 75.9 81 54.3
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 1.1e-12 75.9 81 54.3
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.4e-12 75.5 82 53.7
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 1.9e-12 75.1 82 53.7
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.9e-12 75.1 81 54.3
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 4.2e-12 73.9 81 53.1
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 2.1e-11 71.6 82 50.0
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 2.3e-10 68.2 81 48.1
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 5.1e-10 67.0 33 93.9
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.5e-09 65.5 81 46.9
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 3.3e-09 64.3 80 47.5
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 3.3e-09 64.3 81 46.9
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 3.3e-09 64.3 81 45.7
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 7.4e-09 63.2 81 44.4
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 7.4e-09 63.2 81 45.7
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 9.7e-09 62.8 81 44.4
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 9.7e-09 62.8 81 44.4
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.6e-08 62.0 81 44.4
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.6e-08 62.0 81 44.4
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.6e-08 62.0 81 44.4
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.8e-08 61.2 81 43.2
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.8e-08 61.2 82 42.7
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 3.7e-08 60.8 81 42.0
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 3.7e-08 60.8 81 43.2
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 4.8e-08 60.5 81 40.7
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 4.8e-08 60.5 81 43.2
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 6.3e-08 60.1 81 43.2
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 8.2e-08 59.7 81 43.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 8.2e-08 59.7 81 43.2
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.1e-07 59.3 81 43.2
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.1e-07 59.3 81 43.2
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.1e-07 59.3 81 40.7
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.1e-07 59.3 81 42.0
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.4e-07 58.9 81 43.2
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.4e-07 58.9 81 43.2
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.4e-07 58.9 81 43.2
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 3.1e-07 57.8 81 43.2
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.1e-07 57.8 81 43.2
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 3.1e-07 57.8 81 40.7
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.1e-07 57.4 81 40.7
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.3e-07 57.0 81 38.3
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 5.3e-07 57.0 81 43.2
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 5.3e-07 57.0 81 39.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 6.9e-07 56.6 81 40.7
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 6.9e-07 56.6 81 38.3
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 6.9e-07 56.6 81 40.7
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 6.9e-07 56.6 81 42.0
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 6.9e-07 56.6 81 40.7
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 6.9e-07 56.6 81 42.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 9.0e-07 56.2 81 40.7
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 9.0e-07 56.2 81 40.7
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 9.0e-07 56.2 81 40.7
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 9.0e-07 56.2 81 39.5
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 9.0e-07 56.2 81 42.0
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 9.0e-07 56.2 81 42.0
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.2e-06 55.8 81 42.0
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.5e-06 55.5 81 38.3
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.0e-06 55.1 81 38.3
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.0e-06 55.1 81 40.7
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 2.0e-06 55.1 80 38.8
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.0e-06 55.1 81 40.7
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 2.0e-06 55.1 80 38.8
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.6e-06 54.7 81 39.5
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.6e-06 54.7 81 39.5
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.6e-06 54.7 81 40.7
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.4e-06 54.3 89 38.2
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 3.4e-06 54.3 81 39.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 4.5e-06 53.9 81 39.5
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 4.5e-06 53.9 81 39.5
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 4.5e-06 53.9 86 37.2
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 4.5e-06 53.9 81 40.7
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 4.5e-06 53.9 83 36.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 5.9e-06 53.5 81 38.3
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.9e-06 53.5 81 38.3
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 5.9e-06 53.5 81 40.7
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 5.9e-06 53.5 81 35.8
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 5.9e-06 53.5 81 39.5
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 40.7
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 40.7
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 39.5
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 39.5
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 38.3
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 39.5
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.0e-05 52.8 81 39.5


User provided reference genes

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