Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.9e-170 602.8 404 100.0
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 4.7e-145 518.5 367 98.4
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 4.7e-145 518.5 367 98.4
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.9e-141 506.5 367 97.3
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 6.0e-140 501.5 367 96.5
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 5.3e-120 435.3 367 88.0
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 3.2e-117 426.0 366 87.4
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.0e-107 392.9 374 82.6
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 2.1e-105 386.7 370 81.4
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 5.3e-104 382.1 384 68.8
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 5.5e-101 372.1 373 79.6
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.2e-100 370.9 371 80.6
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.7e-100 369.8 373 80.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 3.5e-100 369.4 373 79.1
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.4e-96 357.5 384 66.9
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 4.5e-95 352.4 376 78.2
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 8.8e-91 338.2 370 74.9
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 3.8e-86 322.8 372 73.7
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 8.8e-83 311.6 372 70.2
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 4.8e-81 305.8 378 70.1
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.4e-77 294.3 376 67.8
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 7.2e-77 292.0 371 68.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.0e-74 283.9 369 67.5
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 3.3e-74 283.1 374 66.6
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 4.4e-74 282.7 369 67.5
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 9.7e-74 281.6 370 53.0
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 9.7e-74 281.6 371 67.4
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.2e-73 280.4 371 66.6
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.3e-73 278.9 392 64.3
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 6.3e-73 278.9 363 68.9
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.1e-72 278.1 370 52.4
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.4e-72 276.9 371 57.7
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.4e-72 276.9 375 67.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.1e-72 276.6 370 66.5
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.1e-72 276.2 372 66.4
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 7.0e-72 275.4 370 66.2
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.2e-71 274.6 370 66.5
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.2e-71 274.6 370 64.6
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.0e-71 273.9 369 66.7
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.5e-71 273.1 363 66.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.5e-71 273.1 336 68.5
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 4.5e-71 272.7 362 66.9
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-70 271.2 373 66.0
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-70 271.2 373 66.0
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 2.9e-70 270.0 371 65.2
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.8e-70 269.6 371 67.4
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 8.5e-70 268.5 364 67.3
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.1e-69 268.1 370 64.9
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.5e-69 266.9 372 65.9
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.5e-69 266.9 363 65.8
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 5.5e-69 265.8 363 57.0
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 7.2e-69 265.4 340 67.4
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 7.2e-69 265.4 372 65.9
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 2.1e-68 263.8 376 62.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 8.0e-68 261.9 369 64.2
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 8.0e-68 261.9 349 65.6
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 8.0e-68 261.9 372 64.5
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 8.0e-68 261.9 370 62.7
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 8.0e-68 261.9 370 62.4
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.0e-67 261.5 374 65.5
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 2.3e-67 260.4 369 65.0
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 3.0e-67 260.0 369 64.5
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 8.8e-67 258.5 365 68.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-66 257.7 369 64.2
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.5e-66 257.7 377 64.7
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 2.6e-66 256.9 350 70.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 4.4e-66 256.1 368 64.1
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 4.4e-66 256.1 369 64.0
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 7.5e-66 255.4 370 65.1
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 9.7e-66 255.0 371 64.7
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.3e-65 254.6 371 64.4
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.7e-65 254.2 399 51.1
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.2e-65 253.8 370 62.2
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 3.7e-65 253.1 376 61.2
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.4e-64 251.1 362 64.9
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 3.1e-64 250.0 370 63.5
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 5.3e-64 249.2 370 62.4
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.2e-63 248.1 372 62.6
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 5.9e-63 245.7 372 64.8
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 3.8e-62 243.0 369 61.0
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 8.5e-62 241.9 363 64.2
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.9e-61 240.7 371 53.9
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.2e-61 240.0 379 59.6
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 7.2e-61 238.8 366 60.9
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 8.0e-60 235.3 340 64.7
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.0e-59 235.0 375 60.8
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 4.0e-59 233.0 370 61.9
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 6.8e-59 232.3 340 64.1
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 6.8e-59 232.3 379 61.7
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.5e-58 231.1 371 62.0
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.4e-58 229.9 382 60.2
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 5.7e-58 229.2 340 62.9
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 8.3e-57 225.3 478 35.8
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.8e-56 224.2 350 62.3
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.1e-56 223.4 375 61.1
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.0e-56 222.2 325 56.3
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 2.7e-55 220.3 371 60.9
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.9e-53 214.2 258 75.2
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.6e-52 211.1 346 61.8
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.6e-52 211.1 345 62.0
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.0e-51 208.4 379 59.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.3e-49 201.4 312 62.8
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 3.7e-49 199.9 377 56.8
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.7e-47 193.7 306 66.0
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 6.6e-46 189.1 273 64.1
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.1e-45 188.3 374 35.8
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 5.6e-45 186.0 313 63.3
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 5.6e-45 186.0 317 61.8
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.6e-42 177.2 322 60.6
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.2e-41 174.1 176 59.7
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 6.0e-39 166.0 315 59.4
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.9e-37 161.0 327 56.9
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 2.0e-34 151.0 174 47.1
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 2.6e-34 150.6 180 51.7
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.2e-33 147.5 370 54.3
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 8.3e-33 145.6 310 57.1
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 8.3e-33 145.6 306 57.2
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.1e-32 143.3 367 51.5
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.1e-31 141.0 125 72.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.7e-31 140.6 311 56.3
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.6e-31 139.8 134 70.1
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.6e-31 139.8 343 53.1
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 6.0e-31 139.4 179 46.9
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.1e-28 131.0 134 66.4
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.4e-24 118.2 324 53.4
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 2.5e-21 107.5 238 61.8
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.6e-20 104.8 92 58.7
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.1e-19 102.1 241 60.6
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 4.0e-19 100.1 105 62.9
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.9e-17 94.0 134 56.0
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.9e-16 91.3 227 53.7
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 2.5e-13 80.9 161 32.3
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 1.6e-12 78.2 326 48.2
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-11 74.7 86 66.3
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 1.9e-08 64.7 34 79.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 9.3e-08 62.4 60 51.7
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 9.3e-08 62.4 34 76.5


User provided reference genes

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