Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 1.7e-96 355.9 166 100.0
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 9.1e-95 350.1 163 99.4
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 2.3e-82 308.9 154 93.5
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 7.8e-78 293.9 182 79.1
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 1.2e-75 286.6 182 76.9
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 1.2e-75 286.6 182 76.9
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 2.8e-75 285.4 189 75.7
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 2.0e-73 279.3 189 74.6
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 2.8e-67 258.8 168 75.6
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 5.8e-65 251.1 182 67.6
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 5.8e-65 251.1 182 67.6
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 1.7e-64 249.6 182 67.0
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 2.9e-64 248.8 182 67.6
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 3.7e-64 248.4 189 65.6
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 1.3e-53 213.4 162 70.4
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 2.3e-53 212.6 182 58.2
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 6.6e-53 211.1 182 57.7
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 2.4e-50 202.6 120 79.2
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 7.1e-47 191.0 167 61.1
BolC8t48093H Brassica oleracea HOM05D008309 ORTHO05D010308 6.0e-46 188.0 120 74.2
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 2.5e-44 182.6 182 53.3
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 3.0e-37 159.1 118 63.6
BolC1t02525H Brassica oleracea HOM05D008309 ORTHO05D010308 3.1e-34 149.1 182 47.8
C05p49520 Brassica napus HOM05D008309 ORTHO05D010308 2.6e-33 146.0 155 50.3
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-31 140.6 110 61.8
BraA04t17824Z Brassica rapa HOM05D008309 ORTHO05D010308 1.1e-31 140.6 182 45.6
C02p19790 Brassica napus HOM05D008309 ORTHO05D010308 1.9e-31 139.8 187 46.0
C07p56660 Brassica napus HOM05D008309 ORTHO05D010308 2.7e-30 136.0 182 44.5
BolC7t46146H Brassica oleracea HOM05D008309 ORTHO05D010308 2.7e-30 136.0 182 44.5
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 3.5e-30 135.6 85 76.5
C01p25750 Brassica napus HOM05D008309 ORTHO05D010308 1.0e-29 134.0 164 48.2
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 2.4e-26 122.9 179 36.9
A09p53580 Brassica napus HOM05D008309 ORTHO05D010308 2.9e-24 115.9 182 39.0
C03p39230 Brassica napus HOM05D008309 ORTHO05D010308 8.2e-19 97.8 177 37.3
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 2.6e-17 92.8 147 34.0
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-16 90.5 147 34.0
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 2.5e-15 86.3 148 32.4
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 7.2e-15 84.7 72 58.3
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 2.7e-14 82.8 149 32.9
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 6.1e-14 81.6 66 57.6
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 6.1e-14 81.6 66 57.6
Nitab4.5_0006180g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.1e-13 78.6 115 37.4
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 8.8e-13 77.8 147 29.9
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 7.4e-12 74.7 175 29.1
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 7.4e-12 74.7 150 30.7
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 7.4e-12 74.7 152 33.6
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 1.3e-11 73.9 140 29.3
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 1.3e-11 73.9 140 29.3
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 1.7e-11 73.6 136 29.4
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 2.2e-11 73.2 137 30.7
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.2e-11 73.2 151 31.8
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.1e-10 70.9 106 34.9
Nitab4.5_0004985g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.1e-10 69.3 115 35.7
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.3e-10 68.6 141 31.2
BolC4t26475H Brassica oleracea HOM05D008309 ORTHO05D010308 6.9e-10 68.2 85 45.9
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 6.9e-10 68.2 149 27.5
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 9.1e-10 67.8 121 33.9
Peaxi162Scf00005g00443 Petunia axillaris HOM05D002954 ORTHO05D003353 1.2e-09 67.4 101 40.6
Phvul.011G145200 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 2.6e-09 66.2 155 30.3
Nitab4.5_0002100g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.5e-09 65.5 111 31.5
Psat3g063200 Pisum sativum HOM05D002954 ORTHO05D003353 4.5e-09 65.5 124 32.3
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 5.9e-09 65.1 99 33.3
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 5.9e-09 65.1 100 35.0
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 7.7e-09 64.7 87 36.8
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.3e-08 63.9 114 36.8
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.7e-08 63.5 133 30.1
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 2.2e-08 63.2 95 34.7
C04p37540 Brassica napus HOM05D000855 ORTHO05D002321 3.8e-08 62.4 34 82.4
BolC4t25321H Brassica oleracea HOM05D008309 ORTHO05D010308 3.8e-08 62.4 34 82.4
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 3.8e-08 62.4 121 32.2
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 3.8e-08 62.4 117 33.3
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 3.8e-08 62.4 96 37.5
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 3.8e-08 62.4 93 36.6
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 5.0e-08 62.0 123 30.1
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.5e-08 61.6 180 26.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 6.5e-08 61.6 160 28.1
arahy.Tifrunner.gnm1.ann1.VWW6CB Arachis hypogaea HOM05D002954 ORTHO05D003353 8.5e-08 61.2 72 40.3
BcaC06g32085 Brassica carinata HOM05D008309 ORTHO05D010308 8.5e-08 61.2 34 76.5
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.5e-08 61.2 141 28.4
Nitab4.5_0000074g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.5e-08 61.2 127 26.8
AL1G48750 Arabidopsis lyrata HOM05D039413 ORTHO05D010308 1.1e-07 60.8 127 32.3
arahy.Tifrunner.gnm1.ann1.FX9Q6E Arachis hypogaea HOM05D002954 ORTHO05D003353 1.1e-07 60.8 95 33.7
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 1.1e-07 60.8 98 36.7
Nitab4.5_0007595g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.1e-07 60.8 185 26.5
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 1.9e-07 60.1 103 33.0
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.9e-07 60.1 100 40.0
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 2.5e-07 59.7 179 26.3
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.2e-07 59.3 121 30.6
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 3.2e-07 59.3 117 29.9
TWI73G0990 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 3.2e-07 59.3 117 29.9
QL05p002086 Quercus lobata HOM05D008595 ORTHO05D000385 4.2e-07 58.9 125 28.0
COL.COLO4_09996 Corchorus olitorius HOM05D011604 ORTHO05D012513 5.5e-07 58.5 150 28.0
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 7.2e-07 58.2 179 26.3
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 7.2e-07 58.2 179 26.8
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 9.4e-07 57.8 93 33.3
A01p29020 Brassica napus HOM05D008309 ORTHO05D010308 9.4e-07 57.8 58 48.3
A09p43080 Brassica napus HOM05D008309 ORTHO05D010308 9.4e-07 57.8 52 53.8
Ca_14618_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 9.4e-07 57.8 157 26.1
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 1.2e-06 57.4 80 36.2
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 1.6e-06 57.0 103 31.1
Lsat_1_v5_gn_4_141161 Lactuca sativa HOM05D001309 ORTHO05D000385 2.7e-06 56.2 122 28.7
BraA01t02998Z Brassica rapa HOM05D008309 ORTHO05D010308 3.6e-06 55.8 47 55.3
arahy.Tifrunner.gnm1.ann1.HJ32VC Arachis hypogaea HOM05D002954 ORTHO05D003353 7.9e-06 54.7 81 33.3


User provided reference genes

Program Settings