Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 3.1e-141 505.4 298 100.0
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 3.1e-141 505.4 298 100.0
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 3.1e-141 505.4 298 100.0
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 2.0e-137 492.7 298 98.7
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 6.0e-137 491.1 298 97.7
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 5.4e-122 441.4 298 89.6
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.3e-115 420.2 298 77.2
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.0e-112 410.6 298 84.2
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 4.3e-95 352.1 305 75.7
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.4e-93 347.1 303 74.9
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.5e-92 343.6 289 76.8
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 2.5e-90 336.3 291 74.9
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 5.1e-88 328.6 298 72.8
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 1.1e-82 310.8 300 69.3
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 3.3e-79 299.3 305 68.9
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 4.3e-79 298.9 228 76.8
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 4.8e-78 295.4 230 71.3
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 2.2e-75 286.6 251 71.7
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 8.5e-75 284.6 295 61.4
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 1.2e-73 280.8 303 65.0
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 2.1e-73 280.0 236 64.4
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 2.7e-73 279.6 223 74.0
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 3.6e-73 279.3 242 64.0
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 7.9e-73 278.1 236 64.4
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 1.0e-72 277.7 288 55.2
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 8.8e-72 274.6 272 57.0
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 1.5e-71 273.9 267 67.8
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 2.0e-71 273.5 266 61.7
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 2.0e-71 273.5 288 51.0
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 1.3e-70 270.8 264 55.3
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 4.8e-70 268.9 269 63.9
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 4.8e-70 268.9 239 59.8
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 5.3e-69 265.4 231 62.8
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 6.9e-69 265.0 270 60.0
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 2.0e-68 263.5 230 62.2
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 3.4e-68 262.7 250 68.0
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 2.9e-67 259.6 243 70.0
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 2.9e-67 259.6 292 62.0
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 8.5e-67 258.1 301 48.2
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 8.5e-67 258.1 239 59.8
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 1.1e-66 257.7 221 64.3
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 1.2e-65 254.2 291 50.9
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 2.1e-65 253.4 232 58.2
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 4.7e-65 252.3 231 65.4
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 7.9e-65 251.5 274 54.7
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 1.4e-64 250.8 231 61.9
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 1.4e-64 250.8 173 68.2
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.3e-64 250.0 240 62.5
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 3.9e-64 249.2 230 64.8
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 1.5e-63 247.3 171 67.8
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 3.3e-63 246.1 223 70.0
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 5.7e-63 245.4 161 71.4
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 5.7e-63 245.4 298 55.7
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 1.3e-62 244.2 259 56.0
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 2.2e-62 243.4 227 63.0
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 3.7e-62 242.7 232 59.5
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 8.2e-62 241.5 287 51.6
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 4.1e-61 239.2 232 57.3
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 7.0e-61 238.4 259 60.2
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 1.6e-60 237.3 240 61.7
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.9e-58 230.3 283 54.8
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 1.9e-58 230.3 233 58.8
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 9.4e-58 228.0 241 63.9
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 1.2e-57 227.6 228 61.4
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 1.2e-57 227.6 221 61.5
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 4.7e-57 225.7 298 48.0
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 8.0e-57 224.9 252 58.7
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 8.0e-57 224.9 240 58.8
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 5.2e-56 222.2 215 61.9
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 5.2e-56 222.2 246 54.9
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 5.2e-56 222.2 246 54.9
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 6.7e-56 221.9 267 55.4
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 1.1e-55 221.1 238 54.6
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 1.5e-55 220.7 243 56.0
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 3.3e-55 219.5 250 52.8
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 5.7e-55 218.8 197 67.5
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 3.7e-54 216.1 230 50.0
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 4.8e-54 215.7 232 59.5
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 2.4e-53 213.4 232 61.2
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 7.7e-52 208.4 219 57.5
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 3.8e-51 206.1 221 54.3
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 1.9e-50 203.8 243 45.7
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 3.2e-50 203.0 243 56.4
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 4.2e-50 202.6 244 57.0
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 7.2e-50 201.8 212 59.9
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 9.4e-50 201.4 238 57.1
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 4.7e-49 199.1 222 60.8
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 8.0e-49 198.4 195 70.8
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 1.0e-48 198.0 252 42.5
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 1.8e-48 197.2 252 42.5
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 1.2e-47 194.5 195 62.1
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 9.8e-47 191.4 242 57.0
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 1.3e-46 191.0 243 52.3
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 8.3e-46 188.3 219 61.2
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 8.3e-46 188.3 219 61.2
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 8.3e-46 188.3 227 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 2.4e-45 186.8 230 55.2
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 2.0e-44 183.7 163 59.5
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 2.7e-44 183.3 239 53.1
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 8.5e-43 178.3 251 53.0
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 1.9e-42 177.2 161 57.1
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 4.0e-40 169.5 194 62.4
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 1.3e-38 164.5 188 47.3
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 6.3e-38 162.2 122 63.9
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 4.1e-37 159.5 228 39.5
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 5.9e-36 155.6 172 44.2
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 1.8e-32 144.1 118 58.5
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 2.3e-32 143.7 107 61.7
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 3.2e-29 133.3 129 50.4
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 1.5e-26 124.4 235 43.8
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 4.7e-25 119.4 158 41.8
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 9.5e-18 95.1 105 71.4
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 1.5e-15 87.8 109 45.0
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 2.6e-15 87.0 102 43.1
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 6.0e-12 75.9 103 66.0
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 6.6e-11 72.4 43 74.4
A01p12600 Brassica napus HOM05D000022 ORTHO05D020144 2.8e-09 67.0 60 61.7
Medtr7g047660 Medicago truncatula HOM05D052963 ORTHO05D007970 1.4e-08 64.7 51 62.7
C01p15170 Brassica napus HOM05D000022 ORTHO05D020144 1.2e-07 61.6 68 52.9
BraA01t01203Z Brassica rapa HOM05D006314 ORTHO05D020144 2.6e-07 60.5 50 68.0
Sp7g19320 Schrenkiella parvula HOM05D006314 ORTHO05D007970 2.6e-07 60.5 152 32.9
MD10G1314000 Malus domestica HOM05D006314 ORTHO05D007970 2.2e-06 57.4 41 61.0
BolC1t01466H Brassica oleracea HOM05D000022 ORTHO05D020144 4.9e-06 56.2 53 58.5


User provided reference genes

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