Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 8.0e-177 623.6 310 100.0
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 6.5e-102 374.8 186 98.9
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 7.5e-74 281.6 171 82.5
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 7.5e-74 281.6 139 98.6
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 7.5e-74 281.6 171 82.5
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 7.5e-74 281.6 171 82.5
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 7.5e-74 281.6 171 82.5
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 7.5e-74 281.6 171 82.5
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 2.2e-73 280.0 171 81.9
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 1.6e-71 273.9 171 80.7
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 2.0e-71 273.5 171 80.1
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 5.9e-71 271.9 171 78.9
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 3.8e-70 269.2 171 79.5
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 1.5e-69 267.3 171 77.8
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 9.4e-69 264.6 172 78.5
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.2e-68 264.2 170 79.4
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 6.1e-68 261.9 239 60.7
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 2.6e-66 256.5 207 65.7
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 4.4e-66 255.8 171 75.4
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.3e-65 254.2 207 64.7
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 1.7e-65 253.8 171 74.3
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 2.2e-65 253.4 171 74.3
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 2.2e-65 253.4 171 74.3
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 2.2e-65 253.4 171 74.3
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.3e-65 251.9 171 73.7
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 6.3e-65 251.9 207 64.7
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 8.3e-65 251.5 171 73.1
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 8.3e-65 251.5 171 73.1
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 1.1e-64 251.1 171 73.1
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 1.8e-64 250.4 171 71.9
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 7.0e-64 248.4 171 71.3
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 2.7e-63 246.5 171 70.2
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 1.0e-62 244.6 171 70.2
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 1.3e-62 244.2 171 67.3
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 5.0e-62 242.3 171 69.6
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 6.5e-62 241.9 206 59.2
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 1.5e-61 240.7 239 54.8
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 2.5e-61 240.0 171 68.4
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 7.2e-61 238.4 171 67.8
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 9.5e-61 238.0 169 66.3
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 9.5e-61 238.0 169 66.3
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 9.5e-61 238.0 167 69.5
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 9.5e-61 238.0 171 68.4
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.6e-60 237.3 171 67.8
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 2.8e-60 236.5 171 66.7
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.6e-60 236.1 171 66.1
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.6e-60 236.1 239 54.0
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 8.0e-60 235.0 239 54.4
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.4e-59 234.2 171 66.7
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.4e-59 234.2 239 53.6
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.4e-59 234.2 239 53.6
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 1.4e-59 234.2 171 66.7
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.8e-59 233.8 171 68.4
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 1.8e-59 233.8 171 64.3
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 2.3e-59 233.4 169 66.3
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.0e-59 233.0 239 53.6
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.0e-59 233.0 171 66.1
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.0e-59 233.0 171 65.5
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 4.0e-59 232.6 207 59.4
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 6.8e-59 231.9 171 64.9
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 8.9e-59 231.5 239 53.1
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.5e-58 230.7 169 65.1
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.5e-58 230.7 169 65.1
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 1.5e-58 230.7 239 52.7
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 2.0e-58 230.3 171 65.5
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 2.0e-58 230.3 171 64.3
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 2.0e-58 230.3 169 64.5
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 2.6e-58 229.9 171 65.5
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 2.6e-58 229.9 239 53.1
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 2.6e-58 229.9 239 54.4
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 2.6e-58 229.9 208 57.2
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 2.6e-58 229.9 177 65.0
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 3.4e-58 229.6 169 64.5
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 4.4e-58 229.2 171 66.1
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 5.7e-58 228.8 169 66.3
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 5.7e-58 228.8 207 57.5
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 7.5e-58 228.4 168 66.1
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 7.5e-58 228.4 253 51.8
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 7.5e-58 228.4 239 52.3
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 9.8e-58 228.0 174 62.6
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 9.8e-58 228.0 168 64.3
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 2.2e-57 226.9 167 65.9
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 2.2e-57 226.9 169 63.9
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.8e-57 226.5 171 64.3
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 2.8e-57 226.5 171 62.6
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 3.7e-57 226.1 171 63.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.9e-57 225.7 171 63.7
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 6.3e-57 225.3 170 62.9
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 6.3e-57 225.3 169 63.3
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 8.3e-57 224.9 169 65.7
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 1.1e-56 224.6 171 64.9
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 1.1e-56 224.6 197 57.9
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 1.1e-56 224.6 183 60.7
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 1.4e-56 224.2 192 59.4
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 1.4e-56 224.2 169 62.7
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 1.8e-56 223.8 171 63.2
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 1.8e-56 223.8 239 51.5
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 2.4e-56 223.4 170 64.1
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 3.1e-56 223.0 167 63.5
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 9.2e-56 221.5 171 63.2
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 9.2e-56 221.5 171 62.6
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 9.2e-56 221.5 171 64.9
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 9.2e-56 221.5 171 64.9
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 2.0e-55 220.3 181 60.2
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 2.7e-55 219.9 171 63.7
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 4.5e-55 219.2 180 62.8
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 1.0e-54 218.0 171 63.2
C07p07770 Brassica napus HOM05D003620 ORTHO05D004261 2.9e-54 216.5 115 93.9
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 2.9e-54 216.5 169 62.7
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 5.0e-54 215.7 171 60.2
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 1.1e-53 214.5 171 60.2
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 5.6e-53 212.2 174 60.3
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 2.1e-52 210.3 220 54.5
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 3.6e-52 209.5 154 66.2
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.4e-51 207.6 174 63.8
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 2.3e-51 206.8 138 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 8.9e-51 204.9 171 57.9
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 4.4e-50 202.6 239 46.0
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 2.5e-45 186.8 112 83.9
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 2.5e-45 186.8 168 53.0
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 4.3e-45 186.0 168 54.2
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 2.8e-44 183.3 171 54.4
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 1.1e-43 181.4 138 63.0
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 5.8e-42 175.6 171 55.6
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 8.3e-41 171.8 171 54.4
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 2.1e-39 167.2 169 53.8
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 6.6e-38 162.2 136 58.8
C07p07760 Brassica napus HOM05D003620 ORTHO05D004261 1.5e-34 151.0 153 58.8
C07p07780 Brassica napus HOM05D003620 ORTHO05D004261 7.5e-34 148.7 72 100.0
BolC7t41196H Brassica oleracea HOM05D003620 ORTHO05D004261 7.5e-34 148.7 72 100.0
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 3.2e-32 143.3 95 70.5
Cpa.g.sc845.5 Carica papaya HOM05D003620 ORTHO05D004261 1.0e-30 138.3 91 71.4
CsaV3_3G020620 Cucumis sativus L. HOM05D003620 ORTHO05D004261 2.5e-29 133.7 169 44.4
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 4.3e-29 132.9 164 45.7
SEGI_27738 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 3.6e-28 129.8 90 64.4
CsaV3_6G003040 Cucumis sativus L. HOM05D003620 ORTHO05D004261 3.1e-27 126.7 106 59.4
arahy.Tifrunner.gnm1.ann1.F2S38R Arachis hypogaea HOM05D003620 ORTHO05D004261 2.6e-26 123.6 89 64.0
Hund22190 Selenicereus undatus HOM05D003620 ORTHO05D004261 3.0e-22 110.2 109 53.2
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 1.4e-19 101.3 78 62.8
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 9.3e-16 88.6 136 39.0
MELO3C026793.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.9e-13 80.9 56 62.5
arahy.Tifrunner.gnm1.ann1.3Q8P58 Arachis hypogaea HOM05D003620 ORTHO05D004261 8.1e-12 75.5 91 47.3
Hund22189 Selenicereus undatus HOM05D003620 ORTHO05D004261 8.1e-12 75.5 47 70.2
GSVIVG01038340001 Vitis vinifera HOM05D003620 ORTHO05D004261 8.1e-12 75.5 62 56.5
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 9.9e-10 68.6 134 31.3
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 1.9e-08 64.3 193 25.9
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 3.2e-08 63.5 133 31.6
arahy.Tifrunner.gnm1.ann1.UIRN9X Arachis hypogaea HOM05D003620 ORTHO05D004261 6.7e-06 55.8 59 50.8


User provided reference genes

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