Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 1.7e-233 812.4 422 100.0
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 1.7e-233 812.4 422 100.0
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.4e-232 808.5 422 99.5
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 2.0e-231 805.4 422 99.1
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 7.7e-231 803.5 422 99.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.4e-229 799.3 422 98.1
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.4e-227 792.7 422 97.2
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.3e-227 792.0 420 97.6
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 3.0e-227 791.6 422 97.2
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 3.0e-227 791.6 422 96.9
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 3.0e-227 791.6 422 96.9
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-226 789.6 422 96.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.1e-226 789.6 422 96.4
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.4e-226 787.7 422 96.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 5.7e-226 787.3 420 96.4
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 5.7e-226 787.3 422 96.7
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 2.2e-225 785.4 422 96.4
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 2.8e-225 785.0 422 96.0
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 5.3e-224 780.8 422 95.5
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 8.2e-217 756.9 418 92.8
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 4.7e-212 741.1 418 90.4
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 3.0e-211 738.4 422 89.6
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 3.0e-211 738.4 422 89.6
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.0e-211 738.4 419 90.5
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.2e-210 736.5 422 88.9
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.4e-210 734.6 422 89.3
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.4e-210 734.6 422 88.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.7e-209 732.6 422 88.2
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 3.7e-209 731.5 422 88.4
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 4.8e-209 731.1 388 97.4
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.8e-209 731.1 422 88.4
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 6.3e-209 730.7 418 89.2
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.1e-208 729.9 422 87.9
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.8e-208 729.2 418 89.0
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 2.4e-208 728.8 422 88.2
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.1e-208 728.0 431 87.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 4.1e-208 728.0 421 87.9
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 7.0e-208 727.2 422 87.7
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 9.1e-208 726.9 418 88.5
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 9.1e-208 726.9 422 88.4
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.6e-207 726.1 418 88.5
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.0e-207 725.7 418 88.5
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.7e-207 725.3 422 87.9
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 2.7e-207 725.3 418 88.5
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 7.7e-207 723.8 422 86.7
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 7.7e-207 723.8 421 87.4
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 7.7e-207 723.8 422 87.7
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.0e-206 723.4 422 87.4
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.7e-206 722.6 422 87.0
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 87.7
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 3.8e-206 721.5 418 88.5
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 88.3
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.9
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 86.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 87.0
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.9e-205 719.2 422 86.0
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 2.5e-205 718.8 418 87.6
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 86.5
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 3.2e-205 718.4 418 87.1
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 3.2e-205 718.4 418 86.6
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.2e-205 718.0 418 87.3
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 4.2e-205 718.0 422 86.7
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 4.2e-205 718.0 420 86.7
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 4.2e-205 718.0 420 86.7
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 5.5e-205 717.6 422 86.3
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 7.2e-205 717.2 422 86.0
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.2e-205 717.2 422 86.0
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 9.5e-205 716.8 419 87.4
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 87.0
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 87.0
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.8e-204 715.3 418 86.4
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 4.7e-204 714.5 418 86.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.5
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 4.7e-204 714.5 421 86.9
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 8.0e-204 713.8 422 86.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 8.0e-204 713.8 422 86.5
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.8e-203 712.6 418 87.8
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 2.3e-203 712.2 422 86.0
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 3.0e-203 711.8 417 86.8
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 87.0
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 4.0e-203 711.4 420 86.2
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 5.2e-203 711.1 470 80.2
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 5.2e-203 711.1 470 80.2
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 85.8
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 6.8e-203 710.7 422 85.1
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 6.8e-203 710.7 422 86.5
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 86.0
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.2e-202 709.9 418 85.9
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 85.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 86.6
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 86.7
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.0e-202 709.1 437 83.5
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 85.3
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 7.5e-202 707.2 422 85.3
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 7.5e-202 707.2 418 86.1
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 9.8e-202 706.8 420 85.7
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 2.2e-201 705.7 422 84.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.2e-201 705.7 437 84.4
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 3.7e-201 704.9 453 81.0
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 8.3e-201 703.7 437 83.1
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 86.4
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.1e-200 703.4 431 84.5
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.1e-200 703.4 420 84.8
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.4e-200 703.0 418 85.6
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 7.0e-200 700.7 430 84.2
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.7e-199 698.7 422 84.1
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 4.5e-199 698.0 422 84.4
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 5.9e-199 697.6 419 85.4
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 5.9e-199 697.6 422 83.6
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 2.9e-198 695.3 418 83.5
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.1e-197 693.3 419 85.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.9e-197 692.6 422 84.4
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 4.3e-197 691.4 447 81.9
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.6e-196 688.3 422 82.9
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.6e-194 682.2 414 84.5
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 5.7e-194 681.0 422 81.5
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.2e-193 679.1 424 82.3
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.1e-192 676.8 501 72.9
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.6e-189 664.5 472 76.1
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.8e-187 659.4 414 82.6
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.0e-187 658.3 428 78.7
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.5e-186 656.4 422 80.6
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.4e-186 655.2 374 89.3
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-184 650.2 420 80.5
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.3e-181 638.3 417 81.1
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 9.5e-181 637.1 389 83.8
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 3.6e-180 635.2 377 84.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.5e-178 629.8 405 79.3
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.9e-177 625.5 398 79.1
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 6.4e-177 624.4 363 87.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 8.3e-177 624.0 372 84.1
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.0e-174 617.1 419 75.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.2e-170 603.6 418 75.6
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 8.1e-164 580.9 400 72.2
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.9e-162 573.9 412 74.5
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.3e-161 573.5 331 87.3
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 6.4e-153 544.7 313 89.1
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.3e-150 536.2 396 67.4
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 4.3e-149 531.9 418 64.8
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 4.2e-144 515.4 398 66.3
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.3e-137 493.8 461 62.5
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 7.4e-133 478.0 278 89.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.2e-129 466.5 392 68.1
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.5e-129 464.9 284 82.4
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.4e-120 437.2 260 85.4
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.7e-113 413.7 243 88.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 4.4e-109 399.1 236 83.9
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.7e-103 379.8 222 85.1
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 1.1e-96 357.8 205 87.3
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.2e-96 355.1 244 75.0
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 7.2e-88 328.6 287 65.2
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.7e-73 280.8 293 51.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 5.8e-69 265.8 207 67.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 7.3e-64 248.8 147 83.0
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-60 236.1 189 60.8
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 2.1e-50 204.1 133 72.2
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 1.7e-49 201.1 194 61.9
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.4e-43 181.4 114 86.0
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.9e-43 181.0 119 71.4
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.3e-41 174.9 161 62.1
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 6.9e-38 162.5 106 79.2
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 1.5e-37 161.4 289 36.3
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.6e-34 151.4 157 58.6
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.1e-34 151.0 157 58.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 5.8e-29 132.9 80 82.5
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 2.2e-28 131.0 179 40.8
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 6.2e-23 112.8 149 47.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.5e-21 108.2 69 78.3
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.4e-14 84.3 96 52.1
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 9.0e-14 82.4 53 81.1
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 3.4e-13 80.5 50 88.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 4.2e-11 73.6 40 92.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.4e-09 68.6 37 83.8
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea HOM05D002061 ORTHO05D002849 3.9e-09 67.0 418 25.1
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.3e-08 63.9 62 50.0
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 7.4e-08 62.8 373 25.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.8e-07 60.8 112 33.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 4.8e-07 60.1 110 32.7
arahy.Tifrunner.gnm1.ann1.DG289Q Arachis hypogaea HOM05D000064 ORTHO05D004075 2.4e-06 57.8 89 41.6
arahy.Tifrunner.gnm1.ann1.WB2JVN Arachis hypogaea HOM05D002038 ORTHO05D002165 2.4e-06 57.8 89 41.6


User provided reference genes

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