Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p11950 Brassica napus HOM05D001993 ORTHO05D014738 1.4e-90 336.3 167 100.0
BcaNung04497 Brassica carinata HOM05D001993 ORTHO05D014738 1.0e-32 144.1 69 98.6
BcaNung04500 Brassica carinata HOM05D001993 ORTHO05D014738 1.0e-32 144.1 69 98.6
BcaNung04502 Brassica carinata HOM05D001993 ORTHO05D014738 1.0e-32 144.1 69 98.6
AL2G40910 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.0e-13 80.9 43 83.7
CARHR074080 Cardamine hirsuta HOM05D001993 ORTHO05D004040 1.0e-13 80.9 43 83.7
Sp5g35230 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.4e-13 80.5 43 83.7
Carub.0002s2700 Capsella rubella HOM05D001993 ORTHO05D004040 6.7e-13 78.2 43 81.4
BcaB05g25259 Brassica carinata HOM05D001993 ORTHO05D004040 2.6e-12 76.3 43 79.1
CARHR205690 Cardamine hirsuta HOM05D001993 ORTHO05D004040 2.2e-11 73.2 43 74.4
BcaC03g15954 Brassica carinata HOM05D001993 ORTHO05D004040 4.1e-10 68.9 51 66.7
BolC9t54083H Brassica oleracea HOM05D001993 ORTHO05D014738 7.0e-10 68.2 32 100.0
DCAR_021360 Daucus carota HOM05D001993 ORTHO05D004040 7.0e-10 68.2 43 69.8
A02p23460 Brassica napus HOM05D001993 ORTHO05D004040 1.2e-09 67.4 51 64.7
BraA02t07338Z Brassica rapa HOM05D001993 ORTHO05D004040 1.2e-09 67.4 51 64.7
Hma1.2p1_0135F.1_g061690 Hydrangea macrophylla HOM05D001993 ORTHO05D004040 1.6e-09 67.0 43 69.8
MSTRG.22778 Avicennia marina HOM05D001993 ORTHO05D004040 2.0e-09 66.6 43 69.8
CSS0044698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 2.7e-09 66.2 43 69.8
Dinv23318 Davidia involucrata HOM05D001993 ORTHO05D004040 2.7e-09 66.2 43 69.8
TWI18G1017 Tripterygium wilfordii HOM05D001993 ORTHO05D004040 2.7e-09 66.2 43 69.8
Aqoxy1G01546 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 3.5e-09 65.9 43 67.4
AT1G80560 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 3.5e-09 65.9 43 67.4
Carub.0002s2699 Capsella rubella HOM05D001993 ORTHO05D004040 3.5e-09 65.9 43 67.4
CARHR125330 Cardamine hirsuta HOM05D001993 ORTHO05D004040 3.5e-09 65.9 43 67.4
Thhalv10018649m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 3.5e-09 65.9 43 67.4
Nn8g39686 Nelumbo nucifera HOM05D001993 ORTHO05D004040 3.5e-09 65.9 43 69.8
BraA07t32014Z Brassica rapa HOM05D001993 ORTHO05D004040 5.9e-09 65.1 43 67.4
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 5.9e-09 65.1 43 69.8
Nitab4.5_0002481g0070 Nicotiana tabacum HOM05D001993 ORTHO05D004040 5.9e-09 65.1 58 51.7
TAR625G0460 Trochodendron aralioides HOM05D001993 ORTHO05D004040 5.9e-09 65.1 43 67.4
A07p45110 Brassica napus HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 67.4
C02p06590 Brassica napus HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 65.1
BolC2t06605H Brassica oleracea HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 65.1
CANSAT78G2160 Cannabis sativa HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 69.8
Cc11_g03270 Coffea canephora HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 67.4
Nitab4.5_0000315g0220 Nicotiana tabacum HOM05D001993 ORTHO05D004040 7.7e-09 64.7 58 51.7
Sabra01G0154500 Salix brachista HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 69.8
Sp5g35220 Schrenkiella parvula HOM05D001993 ORTHO05D004040 7.7e-09 64.7 43 65.1
AL2G40900 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 65.1
A02p23450 Brassica napus HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 67.4
C02p37150 Brassica napus HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 67.4
BolC2t09727H Brassica oleracea HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 67.4
BraA02t07337Z Brassica rapa HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 67.4
Ciclev10025744m.g Citrus clementina HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 69.8
Manes.11G062800 Manihot esculenta HOM05D001993 ORTHO05D004040 1.0e-08 64.3 43 67.4
BcaC03g15953 Brassica carinata HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 65.1
C06p53940 Brassica napus HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 65.1
BolC6t40408H Brassica oleracea HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 65.1
Cpa.g.sc52.151 Carica papaya HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
CiPaw.01G251500 Carya illinoinensis HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
Migut.I00729 Erythranthe guttata HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
HanXRQChr06g0181061 Helianthus annuus HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
HanXRQChr16g0510241 Helianthus annuus HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
Phvul.005G181600 Phaseolus vulgaris HOM05D001993 ORTHO05D004040 1.3e-08 63.9 58 55.2
Rhsim08G0209300 Rhododendron simsii HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
vmacro19031 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 1.3e-08 63.9 43 67.4
Atru.chr13.1967 Acer truncatum HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 65.1
Aqoxy6G02753 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 65.1
AL1G50860 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 67.4
BcaB05g25258 Brassica carinata HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 65.1
Eucgr.F03933 Eucalyptus grandis HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 65.1
Lsat_1_v5_gn_8_105360 Lactuca sativa HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 67.4
Lj1A617G82 Lonicera japonica HOM05D001993 ORTHO05D004040 1.7e-08 63.5 58 55.2
VMungo1080G0486 Vigna mungo HOM05D001993 ORTHO05D004040 1.7e-08 63.5 43 67.4
AT1G31180 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 65.1
Carub.0006s1240 Capsella rubella HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 62.8
CAN.G610.41 Capsicum annuum HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 65.1
Prupe.3G094300 Prunus persica HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 67.4
Sp6g29830 Schrenkiella parvula HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 62.8
SpUn0049_0030 Schrenkiella parvula HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 62.8
vmacro06416 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 2.2e-08 63.2 43 67.4
Actinidia03218 Actinidia chinensis HOM05D001993 ORTHO05D017206 2.9e-08 62.8 43 65.1
Actinidia08952 Actinidia chinensis HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 65.1
Aa31LG4G830 Aethionema arabicum HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 65.1
Aa31LG4G840 Aethionema arabicum HOM05D002499 ORTHO05D004040 2.9e-08 62.8 43 65.1
AT5G14200 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 65.1
BcaC01g01608 Brassica carinata HOM05D009193 ORTHO05D027771 2.9e-08 62.8 34 88.2
A02p02370 Brassica napus HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 62.8
BolC3t19674H Brassica oleracea HOM05D001993 ORTHO05D017704 2.9e-08 62.8 34 88.2
BraA02t05207Z Brassica rapa HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 62.8
Haze_16625 Corylus avellana HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 65.1
RcHm_v2.0_Chr2g0133821 Rosa chinensis HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 67.4
THA.LOC104808191 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 67.4
TAR636G1834 Trochodendron aralioides HOM05D001993 ORTHO05D004040 2.9e-08 62.8 44 63.6
GSVIVG01023010001 Vitis vinifera HOM05D001993 ORTHO05D004040 2.9e-08 62.8 43 67.4
MD17G1218700 Malus domestica HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 65.1
PSO478G5069 Papaver somniferum HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 65.1
PSO541G0229 Papaver somniferum HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 65.1
PSO675G4738 Papaver somniferum HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 65.1
Sc11g0002740 Simmondsia chinensis HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 67.4
SGA_v2.0_scaffold37G14738 Striga asiatica HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 67.4
Thecc.06G035700 Theobroma cacao HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 62.8
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 3.8e-08 62.4 43 65.1
AL6G24870 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 5.0e-08 62.0 43 60.5
Oeu055805.1 Olea europaea HOM05D001993 ORTHO05D004040 5.0e-08 62.0 43 65.1
Potri.001G185600 Populus trichocarpa HOM05D001993 ORTHO05D004040 5.0e-08 62.0 43 65.1
PGR102G0990 Punica granatum HOM05D001993 ORTHO05D004040 5.0e-08 62.0 43 65.1
SalBow7G1960 Salvia bowleyana HOM05D001993 ORTHO05D004040 5.0e-08 62.0 43 65.1
CSS0006698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 6.5e-08 61.6 43 65.1
CSS0034242 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 6.5e-08 61.6 43 65.1
Cfa001917 Carpinus fangiana HOM05D001993 ORTHO05D004040 6.5e-08 61.6 43 65.1
COL.COLO4_10077 Corchorus olitorius HOM05D001993 ORTHO05D004040 6.5e-08 61.6 43 62.8
TAR636G1963 Trochodendron aralioides HOM05D001993 ORTHO05D004040 6.5e-08 61.6 43 62.8
Zm00001eb076030 Zea mays HOM05D001993 ORTHO05D004040 6.5e-08 61.6 43 65.1
C03p73820 Brassica napus HOM05D001993 ORTHO05D017704 8.5e-08 61.2 38 81.6
ECA240G4532 Erigeron canadensis HOM05D001993 ORTHO05D004040 8.5e-08 61.2 43 65.1
Gorai.011G085100 Gossypium raimondii HOM05D001993 ORTHO05D004040 8.5e-08 61.2 43 62.8
Duzib235G0702 Durio zibethinus HOM05D001993 ORTHO05D004040 1.1e-07 60.8 43 60.5
Solyc05g009030.4 Solanum lycopersicum HOM05D001993 ORTHO05D004040 1.1e-07 60.8 43 62.8
Sopen05g004770 Solanum pennellii HOM05D001993 ORTHO05D004040 1.1e-07 60.8 43 62.8
CsaV3_4G001800 Cucumis sativus L. HOM05D001993 ORTHO05D004040 1.5e-07 60.5 43 60.5
Thhalv10013695m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 1.5e-07 60.5 41 63.4
Lalb_Chr24g0395371 Lupinus albus HOM05D001993 ORTHO05D004040 1.5e-07 60.5 43 62.8
MELO3C017853.2 Cucumis melo HOM05D001993 ORTHO05D004040 1.9e-07 60.1 43 60.5
ECA232G4796 Erigeron canadensis HOM05D001993 ORTHO05D004040 1.9e-07 60.1 43 65.1
Os03g0655700 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D004040 1.9e-07 60.1 43 62.8
PSO017G5288 Papaver somniferum HOM05D001993 ORTHO05D004040 1.9e-07 60.1 43 62.8
Zm00001eb434270 Zea mays HOM05D001993 ORTHO05D004040 1.9e-07 60.1 43 62.8
CARHR199140 Cardamine hirsuta HOM05D001993 ORTHO05D004040 2.5e-07 59.7 43 60.5
MBI02_g44629_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 2.5e-07 59.7 43 62.8
Medtr2g104610 Medicago truncatula HOM05D001993 ORTHO05D004040 2.5e-07 59.7 43 60.5
PGSC0003DMG400030577 Solanum tuberosum HOM05D001993 ORTHO05D004040 2.5e-07 59.7 43 62.8
THA.LOC104812454 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 2.5e-07 59.7 43 65.1
ATR0165G046 Amborella trichopoda HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 60.5
CDE05G0929 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 3.2e-07 59.3 90 37.8
Ca_01033_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 60.5
Ca_30253_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 60.5
FvH4_1g23550 Fragaria vesca HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 62.8
FvH4_2g04971 Fragaria vesca HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 62.8
FAN23G0437 Fragaria x ananassa HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 62.8
Sed0011728 Sechium edule HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 60.5
TPR.G19151 Trifolium pratense HOM05D001993 ORTHO05D004040 3.2e-07 59.3 43 60.5
Gohir.A10G072700 Gossypium hirsutum HOM05D001993 ORTHO05D004040 4.2e-07 58.9 43 60.5
QL05p033532 Quercus lobata HOM05D001993 ORTHO05D004040 4.2e-07 58.9 43 62.8
Sed0006349 Sechium edule HOM05D001993 ORTHO05D004040 4.2e-07 58.9 43 58.1
arahy.Tifrunner.gnm1.ann1.9XJ6IP Arachis hypogaea HOM05D001993 ORTHO05D004040 5.5e-07 58.5 43 58.1
arahy.Tifrunner.gnm1.ann1.MFGQ7M Arachis hypogaea HOM05D001993 ORTHO05D004040 5.5e-07 58.5 43 58.1
arahy.Tifrunner.gnm1.ann1.S9NP0T Arachis hypogaea HOM05D001993 ORTHO05D004040 5.5e-07 58.5 43 58.1
arahy.Tifrunner.gnm1.ann1.G3W1SC Arachis hypogaea HOM05D001993 ORTHO05D004040 7.2e-07 58.2 43 58.1
arahy.Tifrunner.gnm1.ann1.WS718B Arachis hypogaea HOM05D001993 ORTHO05D014738 7.2e-07 58.2 43 58.1
Lalb_Chr14g0373941 Lupinus albus HOM05D001993 ORTHO05D004040 9.4e-07 57.8 43 60.5
Peaxi162Scf00045g02262 Petunia axillaris HOM05D001993 ORTHO05D004040 9.4e-07 57.8 58 48.3
arahy.Tifrunner.gnm1.ann1.GNX4LQ Arachis hypogaea HOM05D001993 ORTHO05D017206 1.2e-06 57.4 43 58.1
Glyma.11G079000 Glycine max HOM05D001993 ORTHO05D004040 1.2e-06 57.4 43 60.5
Glyma.13G367900 Glycine max HOM05D001993 ORTHO05D004040 1.2e-06 57.4 43 60.5
Glyma.15G005400 Glycine max HOM05D001993 ORTHO05D004040 1.2e-06 57.4 43 62.8
Aa31LG11G14990 Aethionema arabicum HOM05D001993 ORTHO05D004040 1.6e-06 57.0 43 58.1
Gohir.D10G078300 Gossypium hirsutum HOM05D001993 ORTHO05D004040 1.6e-06 57.0 43 60.5
Psat5g304040 Pisum sativum HOM05D001993 ORTHO05D004040 1.6e-06 57.0 43 55.8
FAN20G0035 Fragaria x ananassa HOM05D001993 ORTHO05D004040 2.1e-06 56.6 43 60.5
Ah.01g004830 Amaranthus hybridus HOM05D001993 ORTHO05D004040 2.7e-06 56.2 43 62.8
CDE02G2027 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 3.6e-06 55.8 43 58.1
HPP92_009455 Vanilla planifolia HOM05D001993 ORTHO05D004040 6.1e-06 55.1 43 60.5
ClCG07G012340 Citrullus lanatus HOM05D001993 ORTHO05D004040 8.0e-06 54.7 43 58.1
SMO201G0043 Selaginella moellendorffii HOM05D001993 ORTHO05D004040 8.0e-06 54.7 43 55.8


User provided reference genes

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