Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 4.1e-63 244.6 127 100.0
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 3.0e-53 211.8 134 85.8
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.5e-20 103.2 75 78.7
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 1.5e-20 103.2 75 78.7
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.5e-20 103.2 75 78.7
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.5e-20 103.2 75 78.7
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 9.7e-20 100.5 75 77.3
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.2e-19 99.4 88 68.2
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 4.8e-19 98.2 75 76.0
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 4.8e-19 98.2 75 76.0
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 4.8e-19 98.2 75 76.0
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 4.8e-19 98.2 75 76.0
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 8.2e-19 97.4 75 74.7
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.5e-17 91.7 75 69.3
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.5e-17 91.7 75 69.3
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 5.9e-17 91.3 84 64.3
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 1.7e-16 89.7 72 70.8
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.7e-16 89.7 72 70.8
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 1.7e-16 89.7 72 70.8
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 1.7e-16 89.7 72 70.8
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 2.2e-16 89.4 88 59.1
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 2.9e-16 89.0 88 60.2
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.9e-16 89.0 75 68.0
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 3.8e-16 88.6 72 70.8
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 5.0e-16 88.2 72 69.4
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 6.5e-16 87.8 88 60.2
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 1.4e-15 86.7 72 68.1
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.4e-15 86.7 72 68.1
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 2.5e-15 85.9 88 58.0
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.5e-15 85.9 72 68.1
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 2.5e-15 85.9 75 66.7
C03p79280 Brassica napus HOM05D003521 ORTHO05D000476 3.2e-15 85.5 61 78.7
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 3.2e-15 85.5 72 68.1
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 5.5e-15 84.7 72 66.7
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.2e-15 84.3 88 56.8
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 7.2e-15 84.3 72 66.7
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 7.2e-15 84.3 72 66.7
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 7.2e-15 84.3 75 64.0
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 7.2e-15 84.3 72 66.7
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 9.4e-15 84.0 72 68.1
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 9.4e-15 84.0 72 68.1
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 9.4e-15 84.0 72 68.1
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 9.4e-15 84.0 88 55.7
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.2e-14 83.6 88 56.8
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 1.6e-14 83.2 75 64.0
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.6e-14 83.2 75 65.3
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.6e-14 83.2 72 66.7
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 2.1e-14 82.8 72 65.3
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 2.1e-14 82.8 72 65.3
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.7e-14 82.4 88 55.7
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.7e-14 82.4 75 64.0
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 3.6e-14 82.0 72 65.3
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 3.6e-14 82.0 72 63.9
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 3.6e-14 82.0 72 63.9
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.6e-14 81.6 72 65.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.6e-14 81.6 72 65.3
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.6e-14 81.6 72 65.3
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 6.1e-14 81.3 72 65.3
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 6.1e-14 81.3 72 62.5
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 7.9e-14 80.9 72 66.7
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 7.9e-14 80.9 72 63.9
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 7.9e-14 80.9 75 62.7
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 1.0e-13 80.5 72 63.9
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.4e-13 80.1 72 63.9
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.4e-13 80.1 75 62.7
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 1.4e-13 80.1 89 53.9
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.8e-13 79.7 75 62.7
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.8e-13 79.7 72 63.9
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.8e-13 79.7 75 61.3
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 2.3e-13 79.3 75 61.3
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.3e-13 79.3 88 54.5
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 2.3e-13 79.3 75 60.0
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 3.0e-13 79.0 72 62.5
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.0e-13 79.0 75 62.7
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 3.0e-13 79.0 88 52.3
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.9e-13 78.6 72 62.5
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 3.9e-13 78.6 75 62.7
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.9e-13 78.6 63 69.8
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 3.9e-13 78.6 63 69.8
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 3.9e-13 78.6 75 60.0
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 5.1e-13 78.2 71 62.0
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 5.1e-13 78.2 88 53.4
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 6.7e-13 77.8 75 60.0
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 8.8e-13 77.4 72 62.5
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.1e-12 77.0 72 61.1
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.5e-12 76.6 70 62.9
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.9e-12 76.3 72 61.1
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.5e-12 75.9 72 59.7
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 3.3e-12 75.5 72 59.7
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 4.3e-12 75.1 72 61.1
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 4.3e-12 75.1 72 58.3
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 4.3e-12 75.1 72 58.3
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 4.3e-12 75.1 72 59.7
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.7e-12 74.7 72 58.3
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 5.7e-12 74.7 71 62.0
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 7.4e-12 74.3 75 57.3
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 7.4e-12 74.3 89 52.8
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 1.3e-11 73.6 72 58.3
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 2.2e-11 72.8 69 60.9
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 2.2e-11 72.8 63 68.3
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 2.8e-11 72.4 72 58.3
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 2.8e-11 72.4 75 56.0
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.7e-11 72.0 80 55.0
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 3.7e-11 72.0 72 56.9
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 6.3e-11 71.2 72 59.7
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 8.2e-11 70.9 72 56.9
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 1.8e-10 69.7 77 54.5
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 9.1e-10 67.4 72 51.4
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 9.1e-10 67.4 75 52.0
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 2.0e-09 66.2 88 47.7
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.0e-09 66.2 90 44.4
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 4.5e-09 65.1 61 60.7
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 5.9e-09 64.7 72 51.4
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 5.9e-09 64.7 88 46.6
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 5.9e-09 64.7 54 68.5
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 7.7e-09 64.3 74 51.4
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.7e-08 63.2 75 54.7
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 2.2e-08 62.8 72 51.4
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 2.2e-08 62.8 75 52.0
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 2.9e-08 62.4 75 52.0
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 6.5e-08 61.2 86 45.3
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 8.5e-08 60.8 126 34.9
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.4e-07 60.1 71 50.7
BcaB01g01057 Brassica carinata HOM05D003521 ORTHO05D000476 2.5e-07 59.3 49 69.4
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.2e-07 58.9 75 50.7
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.5e-07 58.2 101 39.6
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 7.2e-07 57.8 69 52.2
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 7.2e-07 57.8 72 47.2
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 6.1e-06 54.7 46 65.2
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 6.1e-06 54.7 46 65.2
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 6.1e-06 54.7 64 51.6
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 7.9e-06 54.3 68 48.5


User provided reference genes

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