Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 6.4e-70 267.3 137 100.0
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 6.4e-70 267.3 137 100.0
C03p06840 Brassica napus HOM05D039327 ORTHO05D103716 1.1e-48 196.8 116 90.5
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 1.6e-20 103.2 53 96.2
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.8e-19 99.8 54 94.4
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.8e-19 99.8 53 92.5
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.8e-19 99.8 53 92.5
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.8e-19 99.8 54 94.4
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 1.8e-19 99.8 53 90.6
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 6.8e-19 97.8 53 88.7
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.4e-18 95.1 53 83.0
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 5.7e-18 94.7 53 83.0
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.7e-17 93.2 53 83.0
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 2.2e-17 92.8 53 83.0
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 4.1e-16 88.6 53 79.2
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 6.5e-14 81.3 53 79.2
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 1.2e-10 70.5 52 67.3
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 1.2e-10 70.5 52 67.3
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 5.7e-10 68.2 52 65.4
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 7.5e-10 67.8 52 63.5
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 2.2e-09 66.2 52 63.5
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 6.3e-09 64.7 52 61.5
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 1.8e-08 63.2 52 63.5
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.8e-08 63.2 50 62.0
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 3.1e-08 62.4 52 61.5
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.1e-08 62.4 52 59.6
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 4.1e-08 62.0 51 64.7
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 5.4e-08 61.6 32 93.8
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 7.0e-08 61.2 52 57.7
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 7.0e-08 61.2 52 59.6
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 9.1e-08 60.8 52 61.5
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 9.1e-08 60.8 52 63.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.2e-07 60.5 52 53.8
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.2e-07 60.5 52 59.6
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.2e-07 60.5 52 61.5
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.6e-07 60.1 52 53.8
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.6e-07 60.1 52 59.6
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 2.0e-07 59.7 52 55.8
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 2.7e-07 59.3 52 55.8
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 2.7e-07 59.3 52 55.8
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 3.5e-07 58.9 58 58.6
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.5e-07 58.9 52 59.6
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 3.5e-07 58.9 52 55.8
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 3.5e-07 58.9 52 59.6
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 3.5e-07 58.9 52 59.6
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 4.5e-07 58.5 52 57.7
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 5.9e-07 58.2 54 53.7
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 7.7e-07 57.8 52 57.7
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 7.7e-07 57.8 52 57.7
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 7.7e-07 57.8 52 57.7
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.0e-06 57.4 52 59.6
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.0e-06 57.4 52 57.7
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 1.0e-06 57.4 52 59.6
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 1.3e-06 57.0 56 50.0
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.3e-06 57.0 52 59.6
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.7e-06 56.6 52 55.8
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 1.7e-06 56.6 52 53.8
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.3e-06 56.2 54 51.9
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 3.8e-06 55.5 52 59.6
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 5.0e-06 55.1 52 55.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.6e-06 54.7 52 55.8
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 6.6e-06 54.7 50 58.0
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 6.6e-06 54.7 50 58.0
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 6.6e-06 54.7 52 55.8
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 8.6e-06 54.3 52 57.7
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 8.6e-06 54.3 49 59.2


User provided reference genes

Program Settings