Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 2.1e-264 915.6 629 100.0
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.5e-262 908.7 636 98.4
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 4.0e-260 901.4 629 98.9
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 7.4e-254 880.6 629 95.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.2e-216 756.9 519 90.8
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.3e-210 736.9 637 82.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 8.5e-210 734.2 640 81.7
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.2e-206 723.8 635 82.0
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 3.1e-196 689.1 512 83.0
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 9.2e-196 687.6 638 78.2
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 9.2e-196 687.6 653 78.1
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 8.6e-194 681.0 636 77.8
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 4.9e-189 665.2 641 77.4
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 8.0e-184 647.9 637 72.4
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 6.8e-183 644.8 658 75.8
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 5.2e-175 618.6 630 74.1
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.1e-145 521.2 647 59.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 6.2e-144 515.4 643 62.8
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.4e-143 513.5 643 62.7
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 5.3e-143 512.3 640 60.8
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 5.3e-143 512.3 640 62.3
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 6.9e-143 511.9 649 56.9
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.6e-142 510.0 643 62.7
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 9.9e-142 508.1 635 58.1
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 8.4e-141 505.0 638 62.7
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.5e-137 494.2 539 61.8
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 4.8e-136 489.2 642 58.3
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.4e-135 487.6 640 58.9
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 3.1e-135 486.5 642 56.4
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.7e-130 468.8 643 60.3
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 8.7e-130 468.4 635 55.1
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.5e-129 466.8 692 52.7
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 9.7e-129 464.9 638 55.3
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.3e-128 464.5 648 58.6
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.6e-128 464.2 641 59.8
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.8e-128 463.4 642 57.9
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.8e-127 460.7 641 55.7
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 4.5e-126 456.1 515 61.6
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.9e-124 450.7 640 58.4
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 7.2e-124 448.7 515 59.2
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 9.3e-124 448.4 536 59.1
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.3e-122 444.5 501 59.5
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.8e-122 444.1 640 50.0
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 5.1e-122 442.6 644 58.2
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 7.4e-121 438.7 531 52.9
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.3e-120 438.0 520 59.6
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 4.8e-120 436.0 652 50.3
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 6.3e-120 435.6 645 53.6
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 6.3e-120 435.6 537 53.1
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.8e-119 434.1 514 57.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.4e-119 433.7 655 53.9
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.5e-118 431.0 662 56.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.4e-118 429.9 639 51.6
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 4.5e-118 429.5 414 60.1
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 5.9e-118 429.1 656 49.4
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 5.9e-118 429.1 563 49.9
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 7.7e-118 428.7 649 52.7
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.0e-117 428.3 638 51.7
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 8.5e-117 425.2 418 59.8
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.1e-116 424.9 514 61.9
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.5e-116 423.7 520 56.3
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.2e-116 423.3 662 56.3
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 1.6e-115 421.0 415 58.3
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 2.7e-115 420.2 640 52.2
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 6.1e-115 419.1 639 50.2
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.4e-114 417.9 522 58.6
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.4e-114 417.9 541 55.3
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 2.3e-114 417.2 519 52.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 5.1e-114 416.0 638 58.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 8.8e-114 415.2 397 61.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 4.4e-113 412.9 519 57.0
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.7e-112 411.0 636 55.2
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.2e-112 410.6 413 58.4
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.2e-112 410.6 519 58.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.8e-112 409.5 563 56.1
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 6.3e-112 409.1 642 56.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 8.2e-112 408.7 419 58.2
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 2.4e-111 407.1 521 53.9
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 3.1e-111 406.8 419 58.5
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 3.1e-111 406.8 509 55.6
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 6.9e-111 405.6 432 60.0
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 1.0e-109 401.7 520 55.2
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.3e-109 401.4 644 47.8
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.8e-109 399.8 673 54.4
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 2.5e-108 397.1 667 48.0
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 3.2e-108 396.7 413 58.1
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.2e-108 396.4 693 50.9
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 7.2e-108 395.6 559 50.6
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.7e-107 393.7 531 53.1
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.1e-105 388.3 511 58.7
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.5e-105 387.9 637 44.9
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.3e-105 386.7 654 49.8
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 5.7e-105 386.0 512 52.9
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.7e-104 384.4 562 47.9
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 3.7e-104 383.3 517 57.1
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 3.1e-103 380.2 517 58.2
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 2.0e-102 377.5 539 46.9
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.1e-100 371.7 679 43.3
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 4.2e-100 369.8 553 51.2
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 4.2e-100 369.8 550 51.6
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 5.2e-98 362.8 361 57.6
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 9.1e-95 352.1 568 48.1
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.0e-93 346.3 464 49.4
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 3.0e-90 337.0 540 50.9
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 4.4e-89 333.2 370 60.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 6.3e-88 329.3 631 39.9
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.4e-87 328.2 581 45.8
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 5.4e-87 326.2 407 50.4
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.2e-86 325.1 581 42.5
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.0e-82 310.5 376 58.8
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.8e-82 309.3 376 58.2
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.8e-82 309.3 376 58.5
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.8e-82 309.3 376 58.2
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 6.6e-77 292.7 358 50.8
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 4.0e-74 283.5 342 49.7
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.4e-71 275.0 478 45.4
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 2.4e-71 274.2 320 51.2
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.5e-70 270.4 345 47.8
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.3e-66 257.7 313 61.0
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.1e-62 244.6 387 43.4
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.8e-58 231.5 418 42.6
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 9.2e-55 219.2 314 45.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.0e-53 214.2 276 47.1
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.4e-50 204.5 419 37.2
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 1.3e-45 188.7 325 42.5
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 4.0e-42 177.2 246 45.9
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.0e-33 148.3 134 64.2
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.2e-30 139.0 169 50.9
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 2.3e-29 134.8 276 48.6
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.9e-28 131.7 103 67.0
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 1.3e-27 129.0 190 46.3
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.4e-26 125.6 455 31.6
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.1e-26 124.4 338 39.6
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 1.0e-21 109.4 377 29.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.5e-20 104.8 260 36.5
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 3.1e-18 97.8 287 31.0
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.3e-16 92.4 97 52.6
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.3e-16 92.4 340 28.2
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 8.7e-13 79.7 176 42.0
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 4.3e-12 77.4 60 71.7
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 8.2e-11 73.2 146 62.3
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-10 71.6 53 64.2
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 5.5e-07 60.5 99 44.4
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.6e-06 57.4 47 70.2


User provided reference genes

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