Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p07660 Brassica napus HOM05D001771 ORTHO05D032043 1.5e-79 299.7 172 100.0
BcaC04g23498 Brassica carinata HOM05D001771 ORTHO05D032043 9.6e-63 243.8 167 80.8
BcaB04g19866 Brassica carinata HOM05D001771 ORTHO05D001876 5.1e-32 141.7 136 67.6
C07p44130 Brassica napus HOM05D001771 ORTHO05D001876 1.1e-29 134.0 182 56.6
BolC7t44937H Brassica oleracea HOM05D001771 ORTHO05D001876 2.4e-29 132.9 163 60.7
A06p34410 Brassica napus HOM05D001771 ORTHO05D001876 2.6e-28 129.4 164 59.1
BraA06t26370Z Brassica rapa HOM05D001771 ORTHO05D001876 2.6e-28 129.4 164 59.1
Thhalv10005394m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 5.9e-28 128.3 171 57.9
Sp2g23730 Schrenkiella parvula HOM05D001771 ORTHO05D001876 8.5e-27 124.4 171 57.9
Carub.0006s2122 Capsella rubella HOM05D001771 ORTHO05D001876 7.4e-23 111.3 170 54.1
Aa31LG11G2860 Aethionema arabicum HOM05D001771 ORTHO05D001876 5.0e-19 98.6 150 54.7
AL6G34720 Arabidopsis lyrata HOM05D001771 ORTHO05D001876 6.5e-19 98.2 170 50.6
AT5G08390 Arabidopsis thaliana HOM05D001771 ORTHO05D001876 1.4e-16 90.5 86 65.1
THA.LOC104818387 Tarenaya hassleriana HOM05D001771 ORTHO05D001876 1.8e-16 90.1 171 49.1
CARHR204650 Cardamine hirsuta HOM05D001771 ORTHO05D001876 5.1e-16 88.6 173 46.8
AT5G23430 Arabidopsis thaliana HOM05D001771 ORTHO05D001876 6.7e-16 88.2 170 48.2
BcaNung03851 Brassica carinata HOM05D001771 ORTHO05D001876 2.6e-15 86.3 173 48.0
Thecc.02G150900 Theobroma cacao HOM05D001771 ORTHO05D001876 2.8e-14 82.8 139 49.6
BolC9t53684H Brassica oleracea HOM05D001771 ORTHO05D032043 3.7e-14 82.4 46 91.3
Carub.0006s0730 Capsella rubella HOM05D001771 ORTHO05D001876 3.7e-14 82.4 86 61.6
Thhalv10012683m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 3.7e-14 82.4 85 60.0
CARHR190080 Cardamine hirsuta HOM05D001771 ORTHO05D001876 1.1e-13 80.9 171 46.2
BcaNung03730 Brassica carinata HOM05D001771 ORTHO05D001876 1.4e-13 80.5 153 51.6
Sp6g34550 Schrenkiella parvula HOM05D001771 ORTHO05D001876 1.8e-13 80.1 182 43.4
Duzib248G0496 Durio zibethinus HOM05D001771 ORTHO05D001876 2.4e-13 79.7 126 47.6
Duzib052G1195 Durio zibethinus HOM05D001771 ORTHO05D001876 3.1e-13 79.3 139 47.5
AL6G18850 Arabidopsis lyrata HOM05D001771 ORTHO05D001876 5.3e-13 78.6 82 61.0
Atru.chr11.5 Acer truncatum HOM05D001771 ORTHO05D001876 6.9e-13 78.2 139 51.1
Ciclev10014294m.g Citrus clementina HOM05D001771 ORTHO05D001876 2.6e-12 76.3 136 50.0
Sabra10G0198800 Salix brachista HOM05D001771 ORTHO05D001876 3.4e-12 75.9 265 30.2
BcaB01g05601 Brassica carinata HOM05D001771 ORTHO05D001876 4.5e-12 75.5 85 57.6
Haze_17393 Corylus avellana HOM05D001771 ORTHO05D001876 7.7e-12 74.7 126 50.8
BcaB01g05603 Brassica carinata HOM05D001771 ORTHO05D001876 1.3e-11 73.9 82 56.1
C03p04300 Brassica napus HOM05D001771 ORTHO05D001876 1.3e-11 73.9 82 56.1
Potri.008G002300 Populus trichocarpa HOM05D001771 ORTHO05D001876 1.3e-11 73.9 140 46.4
Gorai.008G011900 Gossypium raimondii HOM05D001771 ORTHO05D001876 2.2e-11 73.2 139 43.2
Aa31LG3G18170 Aethionema arabicum HOM05D001771 ORTHO05D001876 2.9e-11 72.8 169 44.4
Gohir.A12G011500 Gossypium hirsutum HOM05D001771 ORTHO05D001876 5.0e-11 72.0 139 43.2
QL01p000131 Quercus lobata HOM05D001771 ORTHO05D001876 5.0e-11 72.0 126 50.8
TWI53G0877 Tripterygium wilfordii HOM05D001771 ORTHO05D001876 5.0e-11 72.0 123 46.3
CsaV3_5G029230 Cucumis sativus L. HOM05D001771 ORTHO05D001876 6.5e-11 71.6 127 41.7
MD16G1005500 Malus domestica HOM05D001771 ORTHO05D001876 6.5e-11 71.6 139 48.2
TWI74G0274 Tripterygium wilfordii HOM05D001771 ORTHO05D001876 6.5e-11 71.6 123 48.0
Gorai.005G214400 Gossypium raimondii HOM05D001771 ORTHO05D001876 1.1e-10 70.9 259 32.8
Solyc02g021360.3 Solanum lycopersicum HOM05D001771 ORTHO05D001876 1.1e-10 70.9 125 40.0
Sopen02g005830 Solanum pennellii HOM05D001771 ORTHO05D001876 1.1e-10 70.9 125 40.0
Gohir.D12G011900 Gossypium hirsutum HOM05D001771 ORTHO05D001876 1.4e-10 70.5 139 42.4
Lj2g0007379 Lotus japonicus HOM05D001771 ORTHO05D001876 1.4e-10 70.5 121 40.5
MELO3C011774.2 Cucumis melo HOM05D001771 ORTHO05D001876 2.5e-10 69.7 121 42.1
Lalb_Chr04g0259101 Lupinus albus HOM05D001771 ORTHO05D001876 2.5e-10 69.7 139 36.0
Manes.04G060400 Manihot esculenta HOM05D001771 ORTHO05D001876 3.2e-10 69.3 139 48.2
Gohir.D01G013100 Gossypium hirsutum HOM05D001771 ORTHO05D001876 4.2e-10 68.9 136 47.8
Gorai.002G014900 Gossypium raimondii HOM05D001771 ORTHO05D001876 5.5e-10 68.6 136 47.8
Aqoxy3G04353 Aquilegia oxysepala HOM05D001771 ORTHO05D001876 7.2e-10 68.2 125 52.8
Gohir.D02G191600 Gossypium hirsutum HOM05D001771 ORTHO05D001876 7.2e-10 68.2 160 43.1
Sabra08G0000200 Salix brachista HOM05D001771 ORTHO05D001876 7.2e-10 68.2 140 37.9
Gohir.A01G011900 Gossypium hirsutum HOM05D001771 ORTHO05D001876 1.6e-09 67.0 129 38.8
MD13G1000300 Malus domestica HOM05D001771 ORTHO05D001876 1.6e-09 67.0 139 46.0
CiPaw.15G000200 Carya illinoinensis HOM05D001771 ORTHO05D001876 2.1e-09 66.6 126 48.4
Prupe.1G352400 Prunus persica HOM05D001771 ORTHO05D001876 2.1e-09 66.6 136 44.1
Nitab4.5_0007390g0010 Nicotiana tabacum HOM05D001771 ORTHO05D001876 2.7e-09 66.2 125 38.4
BolC3t12963H Brassica oleracea HOM05D001771 ORTHO05D001876 6.1e-09 65.1 181 42.5
ClCG11G012830 Citrullus lanatus HOM05D001771 ORTHO05D001876 6.1e-09 65.1 126 38.9
Sed0014586 Sechium edule HOM05D001771 ORTHO05D001876 6.1e-09 65.1 127 38.6
SGA_v2.0_scaffold65G22159 Striga asiatica HOM05D001771 ORTHO05D001876 6.1e-09 65.1 142 33.1
Migut.E00582 Erythranthe guttata HOM05D001771 ORTHO05D001876 1.4e-08 63.9 124 37.1
Eucgr.G02621 Eucalyptus grandis HOM05D001771 ORTHO05D001876 1.8e-08 63.5 124 43.5
MBI06_g17212_MAGBIO Magnolia biondii HOM05D001771 ORTHO05D001876 1.8e-08 63.5 125 38.4
CAN.G711.4 Capsicum annuum HOM05D001771 ORTHO05D001876 2.3e-08 63.2 125 44.8
FvH4_4g37370 Fragaria vesca HOM05D001771 ORTHO05D001876 3.9e-08 62.4 124 45.2
Gohir.A03G168450 Gossypium hirsutum HOM05D001771 ORTHO05D001876 5.2e-08 62.0 123 45.5
RcHm_v2.0_Chr4g0447261 Rosa chinensis HOM05D001771 ORTHO05D001876 5.2e-08 62.0 137 43.1
CSS0037079 Camellia sinensis var. sinensis HOM05D001771 ORTHO05D001876 6.7e-08 61.6 138 44.9
Nitab4.5_0000526g0050 Nicotiana tabacum HOM05D001771 ORTHO05D001876 8.8e-08 61.2 124 36.3
SalBow2G2962 Salvia bowleyana HOM05D001771 ORTHO05D001876 8.8e-08 61.2 124 35.5
Sed0022577 Sechium edule HOM05D001771 ORTHO05D001876 8.8e-08 61.2 127 36.2
MSTRG.2090 Avicennia marina HOM05D001771 ORTHO05D001876 1.1e-07 60.8 138 43.5
Nn4g24997 Nelumbo nucifera HOM05D001771 ORTHO05D001876 1.1e-07 60.8 125 44.8
Peaxi162Scf00655g00327 Petunia axillaris HOM05D001771 ORTHO05D001876 1.1e-07 60.8 124 44.4
Cc11_g00320 Coffea canephora HOM05D001771 ORTHO05D001876 2.0e-07 60.1 125 46.4
PGSC0003DMG401021929 Solanum tuberosum HOM05D001771 ORTHO05D001876 2.0e-07 60.1 133 39.1
Sc21g0003730 Simmondsia chinensis HOM05D001771 ORTHO05D001876 5.7e-07 58.5 123 43.9
arahy.Tifrunner.gnm1.ann1.DK9749 Arachis hypogaea HOM05D001771 ORTHO05D001876 7.4e-07 58.2 120 51.7
arahy.Tifrunner.gnm1.ann1.VCYL5Y Arachis hypogaea HOM05D001771 ORTHO05D001876 7.4e-07 58.2 120 50.0
Lj6A705G42 Lonicera japonica HOM05D001771 ORTHO05D001876 7.4e-07 58.2 122 44.3
Dinv17664 Davidia involucrata HOM05D001771 ORTHO05D001876 1.3e-06 57.4 124 41.9
PGR142G0238 Punica granatum HOM05D001771 ORTHO05D001876 1.7e-06 57.0 84 47.6
A03p03820 Brassica napus HOM05D001771 ORTHO05D001876 2.2e-06 56.6 82 48.8
CBR_g12778 Chara braunii HOM05D001771 ORTHO05D001876 2.2e-06 56.6 31 77.4
FAN07G0208 Fragaria x ananassa HOM05D001771 ORTHO05D001876 2.2e-06 56.6 121 43.0
Medtr6g004040 Medicago truncatula HOM05D001771 ORTHO05D001876 2.2e-06 56.6 139 43.9
TAR371G0444 Trochodendron aralioides HOM05D001771 ORTHO05D001876 2.2e-06 56.6 126 41.3
GSVIVG01034331001 Vitis vinifera HOM05D001771 ORTHO05D001876 2.8e-06 56.2 124 46.8
Ca_04129_v3 Cicer arietinum L. HOM05D001771 ORTHO05D001876 4.8e-06 55.5 121 44.6


User provided reference genes

Program Settings