Gene: AT5G23430

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G23430
  • Transcript Identifier AT5G23430.1
  • Gene Type Coding gene
  • Location Chr5 : 7894073-7899862 : negative

Gene Family Information

  • ID HOM05D001771
  • #Genes/#Species 368/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G23430.1
  • uniprot Q8H0T9

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 113433 Blast hits to 41213 proteins in 1020 species: Archae - 84; Bacteria - 12091; Metazoa - 46348; Fungi - 25039; Plants - 14792; Viruses - 6; Other Eukaryotes - 15073 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051013
IEA
GOA Databasemicrotubule severing
GO:0051013
IMP, IGI
Gene Ontologymicrotubule severing1
GO:0007019
IBA
Gene Ontologymicrotubule depolymerization2
GO:0051510
IMP
Gene Ontologyregulation of unidimensional cell growth1
GO:0043622
IGI
Gene Ontologycortical microtubule organization1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008017
IEA
GOA Databasemicrotubule binding
GO:0008017
IEA
InterPromicrotubule binding
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008352
IEA
GOA Databasekatanin complex
GO:0008352
IPI
IBA
Gene Ontologykatanin complex1 2
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005737
IEA
GOA Databasecytoplasm
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex4
GO:0015630
IDA
Gene Ontologymicrotubule cytoskeleton1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR028021 Katanin p80 subunit, C-terminal
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
13.4.4.2.2 Cell cycle organisation.cytokinesis.phragmoplast disassembly.Katanin ATP-dependent microtubule severing complex.regulatory component