Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p07010 Brassica napus HOM05D002170 ORTHO05D005003 3.8e-117 425.2 228 100.0
BcaC04g23569 Brassica carinata HOM05D002170 ORTHO05D005003 3.3e-116 422.2 227 99.6
BolC9t53617H Brassica oleracea HOM05D002170 ORTHO05D005003 7.2e-116 421.0 227 99.1
A09p06320 Brassica napus HOM05D002170 ORTHO05D005003 5.0e-101 371.7 214 92.5
BraA09t36277Z Brassica rapa HOM05D002170 ORTHO05D005003 5.0e-101 371.7 214 92.5
BcaB04g19807 Brassica carinata HOM05D002170 ORTHO05D005003 6.8e-90 334.7 214 84.6
Sp2g22460 Schrenkiella parvula HOM05D002170 ORTHO05D005003 3.2e-87 325.9 232 78.4
Thhalv10003609m.g Eutrema salsugineum HOM05D002170 ORTHO05D005003 8.6e-85 317.8 223 78.9
Carub.0006s2289 Capsella rubella HOM05D002170 ORTHO05D005003 3.8e-80 302.4 235 73.6
AT5G25060 Arabidopsis thaliana HOM05D002170 ORTHO05D005003 9.2e-79 297.7 235 72.3
AL6G36690 Arabidopsis lyrata HOM05D002170 ORTHO05D005003 1.8e-74 283.5 223 72.6
CARHR188430 Cardamine hirsuta HOM05D002170 ORTHO05D005003 9.6e-68 261.2 233 67.8
Aa31LG3G16300 Aethionema arabicum HOM05D002170 ORTHO05D005003 4.9e-64 248.8 209 68.9
AT5G10800 Arabidopsis thaliana HOM05D002170 ORTHO05D005003 4.5e-57 225.7 237 59.9
Sp6g32650 Schrenkiella parvula HOM05D002170 ORTHO05D005003 5.8e-57 225.3 212 63.7
AL6G21380 Arabidopsis lyrata HOM05D002170 ORTHO05D005003 1.4e-55 220.7 238 59.7
Thhalv10012641m.g Eutrema salsugineum HOM05D002170 ORTHO05D005003 3.9e-53 212.6 219 60.7
BraA06t26506Z Brassica rapa HOM05D002170 ORTHO05D005003 1.3e-45 187.6 236 54.7
CARHR202490 Cardamine hirsuta HOM05D002170 ORTHO05D005003 3.7e-43 179.5 157 65.0
CiPaw.07G231100 Carya illinoinensis HOM05D002170 ORTHO05D005003 2.4e-42 176.8 258 47.7
Potri.006G265700 Populus trichocarpa HOM05D002170 ORTHO05D005003 4.1e-42 176.0 257 47.5
Prupe.1G395500 Prunus persica HOM05D002170 ORTHO05D005003 6.9e-42 175.3 239 49.8
Lj4g0016988 Lotus japonicus HOM05D002170 ORTHO05D005003 1.7e-40 170.6 257 46.7
TPR.G6144 Trifolium pratense HOM05D002170 ORTHO05D005003 2.2e-40 170.2 227 50.7
FAN20G0658 Fragaria x ananassa HOM05D002170 ORTHO05D005003 1.1e-39 167.9 256 45.3
GSVIVG01035985001 Vitis vinifera HOM05D002170 ORTHO05D005003 1.1e-39 167.9 219 51.1
Dinv18466 Davidia involucrata HOM05D002170 ORTHO05D005003 1.9e-39 167.2 260 46.9
Phvul.003G275100 Phaseolus vulgaris HOM05D002170 ORTHO05D005003 1.9e-39 167.2 227 47.6
Dinv10283 Davidia involucrata HOM05D002170 ORTHO05D005003 2.5e-39 166.8 239 49.0
Lalb_Chr09g0334601 Lupinus albus HOM05D002170 ORTHO05D005003 3.2e-39 166.4 256 46.1
Ca_22544_v3 Cicer arietinum L. HOM05D002170 ORTHO05D005003 4.2e-39 166.0 248 47.2
Lalb_Chr05g0229031 Lupinus albus HOM05D002170 ORTHO05D005003 5.5e-39 165.6 257 46.3
Medtr8g070490 Medicago truncatula HOM05D002170 ORTHO05D005003 5.5e-39 165.6 227 48.9
TWI32G0518 Tripterygium wilfordii HOM05D002170 ORTHO05D005003 9.4e-39 164.9 239 46.9
Ciclev10007357m.g Citrus clementina HOM05D002170 ORTHO05D005003 1.2e-38 164.5 220 50.5
FvH4_2g41230 Fragaria vesca HOM05D002170 ORTHO05D005003 1.6e-38 164.1 252 45.2
MD15G1042300 Malus domestica HOM05D002170 ORTHO05D005003 2.7e-38 163.3 257 44.0
TWI63G1817 Tripterygium wilfordii HOM05D002170 ORTHO05D005003 2.7e-38 163.3 253 47.0
ClCG08G013750 Citrullus lanatus HOM05D002170 ORTHO05D005003 3.6e-38 162.9 255 46.3
MELO3C011306.2 Cucumis melo HOM05D002170 ORTHO05D005003 4.6e-38 162.5 254 46.5
VMungo0251G1008 Vigna mungo HOM05D002170 ORTHO05D005003 4.6e-38 162.5 227 46.7
FAN27G0183 Fragaria x ananassa HOM05D002170 ORTHO05D005003 6.1e-38 162.2 252 44.8
Potri.018G017200 Populus trichocarpa HOM05D002170 ORTHO05D005003 7.9e-38 161.8 258 45.3
AUR62040507 Chenopodium quinoa HOM05D002170 ORTHO05D005003 1.0e-37 161.4 251 44.6
ECA240G4525 Erigeron canadensis HOM05D002170 ORTHO05D005003 1.0e-37 161.4 248 46.4
Gohir.A08G253000 Gossypium hirsutum HOM05D002170 ORTHO05D005003 2.3e-37 160.2 247 44.5
CSS0015318 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D005003 3.0e-37 159.8 244 46.7
CsaV3_2G032530 Cucumis sativus L. HOM05D002170 ORTHO05D005003 3.0e-37 159.8 254 46.1
Cpa.g.sc148.25 Carica papaya HOM05D002170 ORTHO05D005003 3.9e-37 159.5 255 44.3
Gohir.D08G274700 Gossypium hirsutum HOM05D002170 ORTHO05D005003 3.9e-37 159.5 246 45.1
Gorai.004G293200 Gossypium raimondii HOM05D002170 ORTHO05D005003 3.9e-37 159.5 246 45.1
HanXRQChr13g0412271 Helianthus annuus HOM05D002170 ORTHO05D005003 3.9e-37 159.5 240 48.3
CANSAT11G1789 Cannabis sativa HOM05D002170 ORTHO05D005003 5.1e-37 159.1 257 44.0
Sabra06G0208300 Salix brachista HOM05D002170 ORTHO05D005003 5.1e-37 159.1 227 48.5
QL02p018561 Quercus lobata HOM05D002170 ORTHO05D005003 6.7e-37 158.7 258 43.0
Glyma.16G095500 Glycine max HOM05D002170 ORTHO05D005003 1.1e-36 157.9 225 46.2
CiPaw.08G005300 Carya illinoinensis HOM05D002170 ORTHO05D005003 2.0e-36 157.1 212 48.6
Glyma.08G265300 Glycine max HOM05D002170 ORTHO05D005003 2.5e-36 156.8 236 46.2
Psat1g044520 Pisum sativum HOM05D002170 ORTHO05D005003 3.3e-36 156.4 243 46.5
MD08G1054700 Malus domestica HOM05D002170 ORTHO05D005003 1.3e-35 154.5 256 42.6
Eucgr.C04040 Eucalyptus grandis HOM05D002170 ORTHO05D005003 1.7e-35 154.1 266 45.1
Rhsim02G0216100 Rhododendron simsii HOM05D002170 ORTHO05D005003 1.7e-35 154.1 255 45.5
FAN15G1846 Fragaria x ananassa HOM05D002170 ORTHO05D005003 4.8e-35 152.5 241 45.6
Manes.16G131000 Manihot esculenta HOM05D002170 ORTHO05D005003 1.4e-34 151.0 225 47.6
Sed0020863 Sechium edule HOM05D002170 ORTHO05D005003 1.4e-34 151.0 253 43.5
Nn2g14023 Nelumbo nucifera HOM05D002170 ORTHO05D005003 4.1e-34 149.4 250 45.6
Lj7A736G82 Lonicera japonica HOM05D002170 ORTHO05D005003 5.3e-34 149.1 213 45.1
PGR044G1237 Punica granatum HOM05D002170 ORTHO05D005003 6.9e-34 148.7 206 46.6
MBI15_g08396_MAGBIO Magnolia biondii HOM05D002170 ORTHO05D005003 1.5e-33 147.5 250 43.6
TAR636G2364 Trochodendron aralioides HOM05D002170 ORTHO05D005003 1.5e-33 147.5 232 45.3
Haze_21390 Corylus avellana HOM05D002170 ORTHO05D005003 2.6e-33 146.7 241 45.2
RcHm_v2.0_Chr6g0299281 Rosa chinensis HOM05D002170 ORTHO05D005003 2.6e-33 146.7 253 42.7
Carub.0006s0930 Capsella rubella HOM05D002170 ORTHO05D005003 4.5e-33 146.0 145 57.2
Duzib168G2019 Durio zibethinus HOM05D002170 ORTHO05D005003 5.9e-33 145.6 235 43.8
TAR625G0335 Trochodendron aralioides HOM05D002170 ORTHO05D005003 1.7e-32 144.1 222 45.5
EL10Ac7g17340 Beta vulgaris HOM05D002170 ORTHO05D005003 1.1e-31 141.4 254 40.6
A06p35810 Brassica napus HOM05D002170 ORTHO05D005003 1.1e-31 141.4 236 46.6
DCAR_004512 Daucus carota HOM05D002170 ORTHO05D005003 1.1e-31 141.4 231 44.6
vmacro16501 Vaccinium macrocarpon HOM05D002170 ORTHO05D005003 1.9e-31 140.6 212 44.3
Oeu021911.1 Olea europaea HOM05D002170 ORTHO05D005003 2.5e-31 140.2 236 41.9
Thecc.09G014300 Theobroma cacao HOM05D002170 ORTHO05D005003 2.5e-31 140.2 238 40.8
Gorai.010G119500 Gossypium raimondii HOM05D002170 ORTHO05D005003 3.2e-31 139.8 235 44.3
vmacro11266 Vaccinium macrocarpon HOM05D002170 ORTHO05D005003 3.2e-31 139.8 240 45.8
Sc07g0003300 Simmondsia chinensis HOM05D002170 ORTHO05D005003 7.2e-31 138.7 239 41.0
Nn8g40047 Nelumbo nucifera HOM05D002170 ORTHO05D005003 9.4e-31 138.3 273 39.9
Sed0005523 Sechium edule HOM05D002170 ORTHO05D005003 9.4e-31 138.3 240 42.5
Ah.15g090090 Amaranthus hybridus HOM05D002170 ORTHO05D005003 1.6e-30 137.5 254 42.5
MSTRG.25828 Avicennia marina HOM05D002170 ORTHO05D005003 2.7e-30 136.7 255 40.8
HanXRQChr03g0081441 Helianthus annuus HOM05D002170 ORTHO05D005003 2.7e-30 136.7 240 43.3
HanXRQChr03g0082661 Helianthus annuus HOM05D002170 ORTHO05D005003 2.7e-30 136.7 240 43.3
Duzib150G1070 Durio zibethinus HOM05D002170 ORTHO05D005003 2.3e-29 133.7 253 40.7
Manes.03G007500 Manihot esculenta HOM05D002170 ORTHO05D005003 5.1e-29 132.5 263 41.8
Nitab4.5_0005295g0020 Nicotiana tabacum HOM05D002170 ORTHO05D005003 1.5e-28 131.0 237 40.5
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.0e-28 130.6 229 40.6
Duzib187G0716 Durio zibethinus HOM05D002170 ORTHO05D005003 2.6e-28 130.2 236 41.1
SalBow4G1870 Salvia bowleyana HOM05D002170 ORTHO05D005003 4.4e-28 129.4 234 41.5
Nitab4.5_0001894g0050 Nicotiana tabacum HOM05D002170 ORTHO05D005003 9.7e-28 128.3 237 40.1
Hund02267 Selenicereus undatus HOM05D002170 ORTHO05D005003 1.3e-27 127.9 226 43.4
Gohir.A06G109900 Gossypium hirsutum HOM05D002170 ORTHO05D005003 2.2e-27 127.1 234 41.5
Aqoxy7G03347 Aquilegia oxysepala HOM05D002170 ORTHO05D005003 2.8e-27 126.7 267 39.0
AUR62042299 Chenopodium quinoa HOM05D002170 ORTHO05D005003 2.8e-27 126.7 207 42.0
Lsat_1_v5_gn_5_62020 Lactuca sativa HOM05D002170 ORTHO05D005003 2.8e-27 126.7 205 43.4
Sopen03g004110 Solanum pennellii HOM05D002170 ORTHO05D005003 8.2e-27 125.2 239 39.7
ATR0749G037 Amborella trichopoda HOM05D002170 ORTHO05D005003 1.1e-26 124.8 259 39.0
CAN.G546.1 Capsicum annuum HOM05D002170 ORTHO05D005003 1.1e-26 124.8 237 39.2
Solyc03g025280.4 Solanum lycopersicum HOM05D002170 ORTHO05D005003 2.4e-26 123.6 238 39.5
Peaxi162Scf00688g00229 Petunia axillaris HOM05D002170 ORTHO05D005003 4.1e-26 122.9 257 40.1
Peaxi162Scf00227g00611 Petunia axillaris HOM05D002170 ORTHO05D005003 9.1e-26 121.7 238 40.3
CDE05G2090 Ceratophyllum demersum HOM05D002170 ORTHO05D005003 2.6e-25 120.2 227 40.1
Migut.E01450 Erythranthe guttata HOM05D002170 ORTHO05D005003 7.7e-25 118.6 247 38.9
Nitab4.5_0001798g0020 Nicotiana tabacum HOM05D002170 ORTHO05D005003 7.7e-25 118.6 215 40.5
Cc08_g07300 Coffea canephora HOM05D002170 ORTHO05D005003 1.0e-24 118.2 239 39.7
PSO782G3858 Papaver somniferum HOM05D002170 ORTHO05D005003 1.0e-24 118.2 252 39.7
Oeu009655.1 Olea europaea HOM05D002170 ORTHO05D005003 2.2e-24 117.1 217 40.1
Nitab4.5_0000748g0050 Nicotiana tabacum HOM05D002170 ORTHO05D005003 8.5e-24 115.2 237 39.7
CDE02G3539 Ceratophyllum demersum HOM05D002170 ORTHO05D005003 4.2e-23 112.8 250 37.2
PSO063G0760 Papaver somniferum HOM05D002170 ORTHO05D005003 9.4e-23 111.7 266 39.5
Nitab4.5_0000927g0020 Nicotiana tabacum HOM05D002170 ORTHO05D005003 1.0e-21 108.2 255 37.6
AagrBONN_evm.TU.Sc2ySwM_117.2284 Anthoceros agrestis HOM05D002170 ORTHO05D005003 2.3e-21 107.1 188 40.4
Actinidia14137 Actinidia chinensis HOM05D002170 ORTHO05D005003 9.7e-20 101.7 205 38.5
Zm00001eb233960 Zea mays HOM05D002170 ORTHO05D005003 1.2e-17 94.7 217 37.8
Zm00001eb234030 Zea mays HOM05D002170 ORTHO05D005003 1.2e-17 94.7 229 38.0
unitig_0.g2818 Utricularia gibba HOM05D002170 ORTHO05D005003 1.3e-16 91.3 245 34.3
Pp3c24_10060 Physcomitrium patens HOM05D002170 ORTHO05D005003 5.5e-15 85.9 158 36.7
Pp3c24_10090 Physcomitrium patens HOM05D002170 ORTHO05D005003 5.5e-15 85.9 158 36.7
Pp3c23_11510 Physcomitrium patens HOM05D002170 ORTHO05D005003 3.6e-14 83.2 211 32.7
SEGI_20387 Sequoiadendron giganteum HOM05D002170 ORTHO05D005003 1.8e-13 80.9 207 34.3
Gohir.D06G104300 Gossypium hirsutum HOM05D002170 ORTHO05D005003 2.6e-12 77.0 104 48.1
Mapoly0184s0028 Marchantia polymorpha HOM05D002170 ORTHO05D005003 2.2e-11 73.9 164 38.4
SMO347G0495 Selaginella moellendorffii HOM05D002170 ORTHO05D005003 4.1e-10 69.7 208 32.2
Atru.chr7.2550 Acer truncatum HOM05D002170 ORTHO05D005003 1.6e-09 67.8 76 59.2
Mapoly0144s0001 Marchantia polymorpha HOM05D002170 ORTHO05D005003 2.0e-09 67.4 135 41.5
Sc13g0005370 Simmondsia chinensis HOM05D002170 ORTHO05D005003 2.1e-06 57.4 47 55.3


User provided reference genes

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