Gene: Sopen03g004110

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g004110
  • Transcript Identifier Sopen03g004110.2
  • Gene Type Coding gene
  • Location Spenn-ch03 : 2806319-2823105 : positive

Gene Family Information

  • ID HOM05D002170
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g004110.2

Descriptions

  • Description RNA recognition motif (RRM)-containing protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: RNA processing | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD , mRNA splicing factor, Cwf21 , ENTH/VHS , SWAP/Surp , DNA-binding SAP , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008942 ENTH/VHS
IPR035967 SWAP/Surp superfamily
IPR013170 mRNA splicing factor Cwf21 domain
IPR000504 RNA recognition motif domain
IPR006569 CID domain
IPR000061 SWAP/Surp
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR035009 SR140, RNA recognition motif
Mapman id Description
16.2.1.2.10 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).snRNP-associated protein (SR140)