Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p03760 Brassica napus HOM05D003530 ORTHO05D004017 1.1e-35 152.9 83 100.0
BolC9t53296H Brassica oleracea HOM05D003530 ORTHO05D004017 2.5e-24 115.2 87 80.5
A09p03530 Brassica napus HOM05D003530 ORTHO05D004017 4.2e-16 87.8 190 41.6
BraA09t35991Z Brassica rapa HOM05D003530 ORTHO05D004017 5.5e-16 87.4 190 41.6
Aa31LG2G4880 Aethionema arabicum HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
Aa31LG9G1280 Aethionema arabicum HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BcaC03g17492 Brassica carinata HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BcaC06g30958 Brassica carinata HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BcaC06g30959 Brassica carinata HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
A02p35660 Brassica napus HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
A06p40860 Brassica napus HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
A06p40870 Brassica napus HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
C02p54500 Brassica napus HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BolC2t11513H Brassica oleracea HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BraA02t08568Z Brassica rapa HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BraA06t27008Z Brassica rapa HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BraA06t27009Z Brassica rapa HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
Thhalv10004960m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
Thhalv10004964m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 3.6e-15 84.7 47 100.0
BcaC06g33781 Brassica carinata HOM05D003530 ORTHO05D004017 8.0e-15 83.6 47 97.9
C07p37000 Brassica napus HOM05D003530 ORTHO05D004017 8.0e-15 83.6 47 97.9
BolC7t44212H Brassica oleracea HOM05D003530 ORTHO05D004017 8.0e-15 83.6 47 97.9
BcaC06g33779 Brassica carinata HOM05D003530 ORTHO05D004017 1.0e-14 83.2 47 97.9
BcaC06g33780 Brassica carinata HOM05D003530 ORTHO05D004017 1.0e-14 83.2 47 97.9
C07p37010 Brassica napus HOM05D003530 ORTHO05D004017 1.0e-14 83.2 47 97.9
BolC7t44213H Brassica oleracea HOM05D003530 ORTHO05D004017 1.0e-14 83.2 47 97.9
AL5G17260 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.8e-14 82.4 47 97.9
AL5G17330 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.8e-14 82.4 47 97.9
Carub.0005s0635 Capsella rubella HOM05D003530 ORTHO05D004017 1.8e-14 82.4 47 97.9
Carub.0005s0637 Capsella rubella HOM05D003530 ORTHO05D004017 1.8e-14 82.4 47 97.9
Sp2g16890 Schrenkiella parvula HOM05D003530 ORTHO05D004017 1.8e-14 82.4 47 97.9
AT3G27830 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
AT3G27850 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
arahy.Tifrunner.gnm1.ann1.816STY Arachis hypogaea HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
Nitab4.5_0008510g0020 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
Nitab4.5_0009062g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
PGR083G1866 Punica granatum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
Solyc02g086730.3 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
Solyc02g086740.1 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
Sopen02g031490 Solanum pennellii HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
Sopen02g031500 Solanum pennellii HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
PGSC0003DMG400000487 Solanum tuberosum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
PGSC0003DMG400000488 Solanum tuberosum HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
THA.LOC104805389 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 2.3e-14 82.0 47 95.7
CANSAT64G2824 Cannabis sativa HOM05D003530 ORTHO05D004017 3.0e-14 81.6 47 95.7
ECA240G2852 Erigeron canadensis HOM05D003530 ORTHO05D004017 3.0e-14 81.6 47 95.7
Nitab4.5_0003505g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 3.0e-14 81.6 47 93.6
Nitab4.5_0004321g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 3.0e-14 81.6 47 93.6
CARHR149300 Cardamine hirsuta HOM05D003530 ORTHO05D004017 5.2e-14 80.9 47 95.7
CARHR149320 Cardamine hirsuta HOM05D003530 ORTHO05D004017 5.2e-14 80.9 47 95.7
Peaxi162Scf00129g10129 Petunia axillaris HOM05D001272 ORTHO05D001843 5.2e-14 80.9 47 93.6
Peaxi162Scf00700g00054 Petunia axillaris HOM05D003530 ORTHO05D004017 5.2e-14 80.9 47 93.6
Nitab4.5_0006542g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 6.8e-14 80.5 47 93.6
Oeu054688.1 Olea europaea HOM05D003530 ORTHO05D004017 6.8e-14 80.5 47 93.6
THA.LOC104823944 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 6.8e-14 80.5 47 93.6
CiPaw.04G026100 Carya illinoinensis HOM05D003530 ORTHO05D004017 8.8e-14 80.1 47 91.5
Hma1.2p1_0858F.1_g229290 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 8.8e-14 80.1 47 91.5
QL02p075946 Quercus lobata HOM05D003530 ORTHO05D004017 8.8e-14 80.1 45 93.3
SalBow7G4259 Salvia bowleyana HOM05D003530 ORTHO05D004017 8.8e-14 80.1 47 93.6
Cfa007412 Carpinus fangiana HOM05D003530 ORTHO05D004017 1.2e-13 79.7 47 91.5
Migut.H00104 Erythranthe guttata HOM05D003530 ORTHO05D004017 1.2e-13 79.7 47 91.5
Gohir.A08G009500 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.2e-13 79.7 47 91.5
Lsat_1_v5_gn_2_14440 Lactuca sativa HOM05D003530 ORTHO05D004017 1.2e-13 79.7 47 89.4
Lsat_1_v5_gn_2_91740 Lactuca sativa HOM05D003530 ORTHO05D004017 1.2e-13 79.7 47 89.4
Thecc.04G011600 Theobroma cacao HOM05D003530 ORTHO05D004017 1.2e-13 79.7 48 87.5
Glyma.11G099300 Glycine max HOM05D003530 ORTHO05D004017 1.5e-13 79.3 47 89.4
Glyma.12G025400 Glycine max HOM05D003530 ORTHO05D004017 1.5e-13 79.3 47 89.4
Gohir.D07G228100 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.5e-13 79.3 47 91.5
Gorai.001G263100 Gossypium raimondii HOM05D003530 ORTHO05D004017 1.5e-13 79.3 47 91.5
Lj2g0009781 Lotus japonicus HOM05D003530 ORTHO05D004017 1.5e-13 79.3 47 91.5
PGR142G3122 Punica granatum HOM05D003530 ORTHO05D004017 1.5e-13 79.3 47 91.5
CAN.G206.18 Capsicum annuum HOM05D003530 ORTHO05D004017 2.0e-13 79.0 47 91.5
CiPaw.03G039700 Carya illinoinensis HOM05D003530 ORTHO05D004017 2.0e-13 79.0 47 89.4
DCAR_021694 Daucus carota HOM05D003530 ORTHO05D004017 2.0e-13 79.0 47 91.5
Dinv33477 Davidia involucrata HOM05D003530 ORTHO05D004017 2.0e-13 79.0 45 91.1
Lsat_1_v5_gn_4_182901 Lactuca sativa HOM05D003530 ORTHO05D004017 2.0e-13 79.0 47 87.2
GSVIVG01032454001 Vitis vinifera HOM05D003530 ORTHO05D004017 2.0e-13 79.0 47 91.5
Atru.chr6.2226 Acer truncatum HOM05D003530 ORTHO05D004017 2.6e-13 78.6 47 87.2
Atru.chr6.2319 Acer truncatum HOM05D003530 ORTHO05D004017 2.6e-13 78.6 47 87.2
SalBow1G5378 Salvia bowleyana HOM05D003530 ORTHO05D004017 2.6e-13 78.6 47 89.4
BcaB07g30141 Brassica carinata HOM05D003530 ORTHO05D004017 3.4e-13 78.2 42 100.0
COL.COLO4_29002 Corchorus olitorius HOM05D003530 ORTHO05D004017 3.4e-13 78.2 47 91.5
CsaV3_3G042510 Cucumis sativus L. HOM05D003530 ORTHO05D004017 3.4e-13 78.2 47 87.2
Gohir.A05G358400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.4e-13 78.2 47 89.4
Gohir.D08G019600 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.4e-13 78.2 47 89.4
Gorai.004G014100 Gossypium raimondii HOM05D003530 ORTHO05D004017 3.4e-13 78.2 47 89.4
Actinidia35752 Actinidia chinensis HOM05D003530 ORTHO05D004017 4.4e-13 77.8 47 89.4
ClCG09G019050 Citrullus lanatus HOM05D003530 ORTHO05D004017 4.4e-13 77.8 47 89.4
DCAR_015053 Daucus carota HOM05D003530 ORTHO05D004017 4.4e-13 77.8 47 89.4
Prupe.3G286600 Prunus persica HOM05D003530 ORTHO05D004017 4.4e-13 77.8 47 87.2
Sabra16G0225100 Salix brachista HOM05D003530 ORTHO05D004017 4.4e-13 77.8 47 89.4
Cc07_g02040 Coffea canephora HOM05D003530 ORTHO05D004017 5.7e-13 77.4 47 87.2
Lalb_Chr17g0337251 Lupinus albus HOM05D003530 ORTHO05D004017 5.7e-13 77.4 47 85.1
Phvul.011G027700 Phaseolus vulgaris HOM05D003530 ORTHO05D004017 5.7e-13 77.4 47 87.2
CDE10G0273 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 87.2
CDE10G0897 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 87.2
ClCG10G014140 Citrullus lanatus HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 85.1
Haze_14690 Corylus avellana HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 89.4
MELO3C009965.2 Cucumis melo HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 85.1
Gorai.012G062600 Gossypium raimondii HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 87.2
Manes.04G063300 Manihot esculenta HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 89.4
Potri.001G346100 Populus trichocarpa HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 89.4
Rhsim08G0053400 Rhododendron simsii HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 87.2
Sed0013614 Sechium edule HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 85.1
Sed0017530 Sechium edule HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 85.1
VMungo1127G1762 Vigna mungo HOM05D003530 ORTHO05D004017 7.5e-13 77.0 47 85.1
Ca_04182_v3 Cicer arietinum L. HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
Ciclev10016852m.g Citrus clementina HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 85.1
FvH4_6g50910 Fragaria vesca HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
FAN02G4450 Fragaria x ananassa HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
FAN05G3949 Fragaria x ananassa HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
FAN09G0266 Fragaria x ananassa HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
FAN14G3916 Fragaria x ananassa HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
Gohir.A07G221400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 89.4
Hma1.2p1_0993F.1_g245370 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 87.2
Lju41C36T20 Lonicera japonica HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 87.2
Sabra16G0225800 Salix brachista HOM05D003530 ORTHO05D004017 9.8e-13 76.6 47 85.1
MELO3C021553.2 Cucumis melo HOM05D003530 ORTHO05D004017 1.3e-12 76.3 47 85.1
Migut.K01378 Erythranthe guttata HOM05D003530 ORTHO05D004017 1.3e-12 76.3 47 87.2
MD09G1031000 Malus domestica HOM05D003530 ORTHO05D004017 1.3e-12 76.3 47 85.1
MD17G1032900 Malus domestica HOM05D003530 ORTHO05D004017 1.3e-12 76.3 47 85.1
Medtr6g006060 Medicago truncatula HOM05D003530 ORTHO05D004017 1.7e-12 75.9 47 87.2
EL10Ac4g08602 Beta vulgaris HOM05D003530 ORTHO05D004017 2.2e-12 75.5 47 87.2
PSO017G1080 Papaver somniferum HOM05D003530 ORTHO05D004017 2.2e-12 75.5 47 87.2
PSO478G3901 Papaver somniferum HOM05D003530 ORTHO05D004017 2.2e-12 75.5 47 87.2
RcHm_v2.0_Chr2g0172281 Rosa chinensis HOM05D003530 ORTHO05D004017 2.2e-12 75.5 47 87.2
SGA_v2.0_scaffold40G15640 Striga asiatica HOM05D003530 ORTHO05D004017 2.2e-12 75.5 45 88.9
TWI12G0626 Tripterygium wilfordii HOM05D003530 ORTHO05D004017 2.2e-12 75.5 47 85.1
Aqoxy3G02924 Aquilegia oxysepala HOM05D003530 ORTHO05D004017 2.8e-12 75.1 47 89.4
Os01g0662300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 2.8e-12 75.1 50 82.0
PSO063G4512 Papaver somniferum HOM05D003530 ORTHO05D004017 2.8e-12 75.1 47 87.2
PSO832G4560 Papaver somniferum HOM05D003530 ORTHO05D004017 2.8e-12 75.1 46 89.1
HanXRQChr07g0198851 Helianthus annuus HOM05D003530 ORTHO05D004017 3.7e-12 74.7 43 90.7
MBI10_g28017_MAGBIO Magnolia biondii HOM05D003530 ORTHO05D004017 3.7e-12 74.7 47 85.1
AL5G17310 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 4.8e-12 74.3 47 85.1
Gohir.D04G055700 Gossypium hirsutum HOM05D003530 ORTHO05D004017 4.8e-12 74.3 47 85.1
LjContig00484g0021782 Lotus japonicus HOM05D003530 ORTHO05D004017 4.8e-12 74.3 47 83.0
Manes.11G104900 Manihot esculenta HOM05D003530 ORTHO05D004017 4.8e-12 74.3 47 85.1
Ah.07g200110 Amaranthus hybridus HOM05D003530 ORTHO05D004017 6.3e-12 73.9 47 85.1
Peaxi162Scf00481g00619 Petunia axillaris HOM05D003530 ORTHO05D004017 6.3e-12 73.9 43 88.4
Psat1g056240 Pisum sativum HOM05D003530 ORTHO05D004017 6.3e-12 73.9 47 85.1
unitig_62.g23149 Utricularia gibba HOM05D003530 ORTHO05D004017 6.3e-12 73.9 47 83.0
Nn3g16848 Nelumbo nucifera HOM05D003530 ORTHO05D004017 8.3e-12 73.6 47 85.1
Sed0027802 Sechium edule HOM05D003530 ORTHO05D004017 8.3e-12 73.6 47 80.9
unitig_52.g17666 Utricularia gibba HOM05D003530 ORTHO05D004017 8.3e-12 73.6 47 80.9
Lalb_Chr06g0175931 Lupinus albus HOM05D003530 ORTHO05D004017 1.1e-11 73.2 47 80.9
QL02p075960 Quercus lobata HOM05D003530 ORTHO05D004017 1.1e-11 73.2 45 86.7
Zm00001eb359610 Zea mays HOM05D003530 ORTHO05D004017 1.1e-11 73.2 47 85.1
AUR62037980 Chenopodium quinoa HOM05D003530 ORTHO05D004017 1.4e-11 72.8 45 82.2
Rhsim10G0020100 Rhododendron simsii HOM05D003530 ORTHO05D004017 1.4e-11 72.8 47 80.9
CSS0007307 Camellia sinensis var. sinensis HOM05D003530 ORTHO05D004017 1.8e-11 72.4 47 85.1
Os05g0568300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 1.8e-11 72.4 47 85.1
AT3G27840 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 2.4e-11 72.0 47 83.0
SGA_v2.0_scaffold30G12445 Striga asiatica HOM05D003530 ORTHO05D004017 2.4e-11 72.0 47 83.0
AUR62019712 Chenopodium quinoa HOM05D003530 ORTHO05D004017 4.1e-11 71.2 44 84.1
Oeu014862.1 Olea europaea HOM05D003530 ORTHO05D004017 4.1e-11 71.2 43 86.0
ATR0789G179 Amborella trichopoda HOM05D003530 ORTHO05D004017 5.4e-11 70.9 47 76.6
TPR.G27369 Trifolium pratense HOM05D003530 ORTHO05D004017 5.4e-11 70.9 47 80.9
Duzib147G0262 Durio zibethinus HOM05D003530 ORTHO05D004017 7.0e-11 70.5 47 80.9
Cpa.g.sc39.100 Carica papaya HOM05D003530 ORTHO05D004017 9.1e-11 70.1 43 86.0
SEGI_29600 Sequoiadendron giganteum HOM05D003530 ORTHO05D004017 9.1e-11 70.1 47 78.7
Nitab4.5_0010319g0050 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.6e-10 69.3 40 92.5
Ah.12g054660 Amaranthus hybridus HOM05D003530 ORTHO05D004017 2.0e-10 68.9 42 85.7
Sc03g0011050 Simmondsia chinensis HOM05D003530 ORTHO05D004017 2.7e-10 68.6 45 80.0
TAR622G1176 Trochodendron aralioides HOM05D003530 ORTHO05D004017 4.5e-10 67.8 42 83.3
BcaB01g03824 Brassica carinata HOM05D003530 ORTHO05D004017 5.9e-10 67.4 47 78.7
HPP92_005137 Vanilla planifolia HOM05D003530 ORTHO05D004017 1.0e-09 66.6 48 72.9
Pp3c16_2080 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.3e-09 66.2 46 76.1
Pp3c25_1440 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.3e-09 66.2 46 76.1
Pp3c5_2700 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.7e-09 65.9 46 73.9
Pp3c4_24130 Physcomitrium patens HOM05D003530 ORTHO05D004017 2.2e-09 65.5 46 73.9
C03p23680 Brassica napus HOM05D003530 ORTHO05D004017 2.9e-09 65.1 47 76.6
BolC3t14763H Brassica oleracea HOM05D003530 ORTHO05D004017 2.9e-09 65.1 47 76.6
Nitab4.5_0005820g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.9e-09 65.1 38 89.5
Pp3c26_10990 Physcomitrium patens HOM05D003530 ORTHO05D004017 2.9e-09 65.1 46 71.7
SMO356G0309 Selaginella moellendorffii HOM05D003530 ORTHO05D004017 1.1e-08 63.2 42 76.2
BcaC01g05648 Brassica carinata HOM05D003530 ORTHO05D004017 7.2e-08 60.5 41 78.0
Carub.0005s0636 Capsella rubella HOM05D003530 ORTHO05D004017 9.4e-08 60.1 61 60.7
TAR374G1092 Trochodendron aralioides HOM05D003530 ORTHO05D004017 1.6e-07 59.3 45 75.6
Mapoly0071s0038 Marchantia polymorpha HOM05D003530 ORTHO05D004017 2.7e-07 58.5 46 65.2
Haze_26791 Corylus avellana HOM05D001156 ORTHO05D004017 5.2e-06 54.3 45 60.0
AL3G15880 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 6.8e-06 53.9 30 93.3


User provided reference genes

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