Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p03660 Brassica napus HOM05D001647 ORTHO05D040229 2.3e-152 542.3 301 100.0
BcaC04g23899 Brassica carinata HOM05D001647 ORTHO05D001191 2.5e-82 309.7 343 62.4
Thhalv10004117m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 1.1e-50 204.5 183 70.5
C07p36660 Brassica napus HOM05D001647 ORTHO05D001191 4.3e-50 202.6 427 43.1
BcaC06g30978 Brassica carinata HOM05D001647 ORTHO05D001191 9.5e-50 201.4 189 71.4
A06p41080 Brassica napus HOM05D001647 ORTHO05D001191 9.5e-50 201.4 190 71.1
BolC7t44184H Brassica oleracea HOM05D000088 ORTHO05D001191 9.5e-50 201.4 190 71.6
BraA06t27031Z Brassica rapa HOM05D001647 ORTHO05D001191 4.7e-49 199.1 191 71.2
Carub.0005s0598 Capsella rubella HOM05D001647 ORTHO05D001191 8.1e-49 198.4 185 65.9
AL5G16970 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 1.1e-48 198.0 185 65.4
BcaC06g33804 Brassica carinata HOM05D001647 ORTHO05D001191 1.1e-48 198.0 427 42.6
AT3G27550 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 1.8e-48 197.2 186 68.8
Sp2g16720 Schrenkiella parvula HOM05D001647 ORTHO05D001191 6.8e-48 195.3 427 42.6
CARHR148930 Cardamine hirsuta HOM05D001647 ORTHO05D001191 2.9e-46 189.9 189 65.6
C02p54320 Brassica napus HOM05D001812 ORTHO05D001191 3.7e-46 189.5 187 69.0
Aa31LG2G5110 Aethionema arabicum HOM05D001647 ORTHO05D001191 4.9e-46 189.1 182 70.9
BcaC03g17472 Brassica carinata HOM05D001647 ORTHO05D001191 4.9e-46 189.1 186 70.4
A02p35540 Brassica napus HOM05D001647 ORTHO05D001191 6.4e-46 188.7 188 68.1
BolC2t11499H Brassica oleracea HOM05D001647 ORTHO05D001191 6.4e-46 188.7 187 68.4
BraA02t08556Z Brassica rapa HOM05D001647 ORTHO05D001191 6.4e-46 188.7 188 68.1
BcaB07g30153 Brassica carinata HOM05D001647 ORTHO05D001191 1.0e-43 181.4 424 39.2
Eucgr.I01734 Eucalyptus grandis HOM05D001647 ORTHO05D001191 7.1e-37 158.7 154 64.3
THA.LOC104823954 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 3.9e-35 152.9 156 64.1
Potri.001G343700 Populus trichocarpa HOM05D001647 ORTHO05D001191 4.3e-34 149.4 151 60.9
Haze_14755 Corylus avellana HOM05D000709 ORTHO05D001191 5.6e-34 149.1 132 65.2
Psat1g053800 Pisum sativum HOM05D001647 ORTHO05D001191 5.6e-34 149.1 134 64.9
PGR142G3896 Punica granatum HOM05D001647 ORTHO05D001191 5.6e-34 149.1 138 63.0
TWI56G0370 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 5.6e-34 149.1 132 65.2
arahy.Tifrunner.gnm1.ann1.BA4K4E Arachis hypogaea HOM05D001647 ORTHO05D001191 7.3e-34 148.7 132 66.7
arahy.Tifrunner.gnm1.ann1.S0UJPA Arachis hypogaea HOM05D001647 ORTHO05D001191 7.3e-34 148.7 132 66.7
MSTRG.3140 Avicennia marina HOM05D001647 ORTHO05D001191 9.6e-34 148.3 133 65.4
Phvul.004G005000 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.2e-33 147.9 132 66.7
CANSAT64G2892 Cannabis sativa HOM05D001647 ORTHO05D001191 1.6e-33 147.5 150 58.7
TAR371G1112 Trochodendron aralioides HOM05D000709 ORTHO05D001191 1.6e-33 147.5 175 53.7
unitig_52.g17659 Utricularia gibba HOM05D001647 ORTHO05D001191 1.6e-33 147.5 156 57.7
Ca_04144_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 2.1e-33 147.1 134 65.7
Glyma.05G002800 Glycine max HOM05D001647 ORTHO05D001191 2.8e-33 146.7 132 65.9
Glyma.19G003000 Glycine max HOM05D001647 ORTHO05D001191 2.8e-33 146.7 132 65.9
VMungo0464G0398 Vigna mungo HOM05D001647 ORTHO05D001191 2.8e-33 146.7 132 65.9
Manes.15G151600 Manihot esculenta HOM05D001647 ORTHO05D001191 3.6e-33 146.4 132 64.4
CiPaw.04G029400 Carya illinoinensis HOM05D000709 ORTHO05D001191 4.7e-33 146.0 132 65.2
TPR.G31951 Trifolium pratense HOM05D001647 ORTHO05D001191 4.7e-33 146.0 132 65.2
GSVIVG01032387001 Vitis vinifera HOM05D001647 ORTHO05D001191 4.7e-33 146.0 147 61.2
Sabra16G0223000 Salix brachista HOM05D001647 ORTHO05D001191 6.2e-33 145.6 133 63.9
Migut.H00066 Erythranthe guttata HOM05D001647 ORTHO05D001191 8.1e-33 145.2 155 57.4
CSS0005156 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 1.1e-32 144.8 132 64.4
CSS0049659 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D001191 1.1e-32 144.8 132 64.4
Dinv33429 Davidia involucrata HOM05D001647 ORTHO05D001191 1.4e-32 144.4 156 57.7
SalBow1G0849 Salvia bowleyana HOM05D001647 ORTHO05D001191 1.8e-32 144.1 151 58.9
Cc07_g01540 Coffea canephora HOM05D001647 ORTHO05D001191 2.4e-32 143.7 142 62.0
Ciclev10014676m.g Citrus clementina HOM05D001647 ORTHO05D001191 4.0e-32 142.9 150 59.3
Nn3g16694 Nelumbo nucifera HOM05D001647 ORTHO05D001191 6.9e-32 142.1 197 46.7
QL02p074109 Quercus lobata HOM05D001647 ORTHO05D001191 6.9e-32 142.1 133 63.2
Lj2g0023354 Lotus japonicus HOM05D001647 ORTHO05D001191 1.2e-31 141.4 132 63.6
Medtr6g004480 Medicago truncatula HOM05D001647 ORTHO05D001191 1.2e-31 141.4 132 63.6
Thecc.04G019000 Theobroma cacao HOM05D001647 ORTHO05D001191 1.2e-31 141.4 160 55.6
DCAR_021729 Daucus carota HOM05D000709 ORTHO05D001191 1.5e-31 141.0 151 57.0
Duzib147G0348 Durio zibethinus HOM05D001647 ORTHO05D001191 1.5e-31 141.0 129 62.8
MD09G1023500 Malus domestica HOM05D001647 ORTHO05D001191 2.6e-31 140.2 132 62.1
MD17G1023000 Malus domestica HOM05D001647 ORTHO05D001191 2.6e-31 140.2 132 62.9
Atru.chr6.2421 Acer truncatum HOM05D001647 ORTHO05D001191 3.4e-31 139.8 140 63.6
Gohir.A05G355000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 3.4e-31 139.8 130 61.5
Gorai.012G064900 Gossypium raimondii HOM05D001647 ORTHO05D001191 3.4e-31 139.8 130 61.5
Lj7A600G51 Lonicera japonica HOM05D001647 ORTHO05D001191 3.4e-31 139.8 132 63.6
Lalb_Chr11g0068561 Lupinus albus HOM05D001647 ORTHO05D001191 3.4e-31 139.8 149 59.7
MBI16_g05784_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 3.4e-31 139.8 132 62.1
RcHm_v2.0_Chr2g0173221 Rosa chinensis HOM05D001647 ORTHO05D001191 3.4e-31 139.8 151 57.0
SGA_v2.0_scaffold2G01173 Striga asiatica HOM05D001647 ORTHO05D001191 3.4e-31 139.8 163 55.8
FAN05G1297 Fragaria x ananassa HOM05D001647 ORTHO05D001191 4.4e-31 139.4 132 61.4
FAN09G0821 Fragaria x ananassa HOM05D001647 ORTHO05D001191 4.4e-31 139.4 132 61.4
FAN14G0999 Fragaria x ananassa HOM05D001647 ORTHO05D001191 4.4e-31 139.4 132 61.4
Prupe.3G293300 Prunus persica HOM05D001647 ORTHO05D001191 5.8e-31 139.0 132 60.6
Hma1.2p1_1747F.1_g300520 Hydrangea macrophylla HOM05D001647 ORTHO05D001191 9.9e-31 138.3 138 62.3
SGA_v2.0_scaffold42G16007 Striga asiatica HOM05D001647 ORTHO05D001191 9.9e-31 138.3 163 55.2
FvH4_6g51690 Fragaria vesca HOM05D001647 ORTHO05D001191 1.3e-30 137.9 151 57.0
FAN02G3474 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.3e-30 137.9 151 57.0
FAN14G0654 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.3e-30 137.9 151 57.0
Solyc07g047900.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 1.3e-30 137.9 143 58.7
Sopen07g024330 Solanum pennellii HOM05D001647 ORTHO05D001191 1.3e-30 137.9 143 58.7
Gohir.D04G058200 Gossypium hirsutum HOM05D001647 ORTHO05D001191 1.7e-30 137.5 130 60.8
Lsat_1_v5_gn_0_47341 Lactuca sativa HOM05D001647 ORTHO05D001191 2.9e-30 136.7 136 60.3
PGSC0003DMG400006153 Solanum tuberosum HOM05D001647 ORTHO05D001191 2.9e-30 136.7 141 58.9
Aqoxy5G03747 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 6.4e-30 135.6 130 62.3
HanXRQChr17g0548611 Helianthus annuus HOM05D001647 ORTHO05D001191 6.4e-30 135.6 135 60.7
Zm00001eb354360 Zea mays HOM05D001647 ORTHO05D001191 6.4e-30 135.6 151 55.0
ClCG09G019350 Citrullus lanatus HOM05D001647 ORTHO05D001191 8.4e-30 135.2 134 61.2
COL.COLO4_29168 Corchorus olitorius HOM05D000709 ORTHO05D001191 8.4e-30 135.2 151 55.6
MELO3C021588.2 Cucumis melo HOM05D001647 ORTHO05D001191 8.4e-30 135.2 134 61.2
Os05g0145300 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 8.4e-30 135.2 147 56.5
ECA246G2376 Erigeron canadensis HOM05D001647 ORTHO05D001191 1.1e-29 134.8 133 60.9
CsaV3_5G027060 Cucumis sativus L. HOM05D001647 ORTHO05D001191 1.4e-29 134.4 134 60.4
Nitab4.5_0003267g0020 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.9e-29 134.0 143 56.6
Actinidia05984 Actinidia chinensis HOM05D001647 ORTHO05D001191 2.4e-29 133.7 179 53.6
Sed0000147 Sechium edule HOM05D001647 ORTHO05D001191 2.4e-29 133.7 134 59.7
BolC9t53286H Brassica oleracea HOM05D001647 ORTHO05D040229 3.2e-29 133.3 122 68.0
Nitab4.5_0002077g0020 Nicotiana tabacum HOM05D001647 ORTHO05D001191 4.2e-29 132.9 143 55.9
Peaxi162Scf00700g00436 Petunia axillaris HOM05D001647 ORTHO05D001191 4.2e-29 132.9 133 58.6
Zm00001eb417950 Zea mays HOM05D001647 ORTHO05D001191 4.2e-29 132.9 157 54.8
CAN.G404.63 Capsicum annuum HOM05D001647 ORTHO05D001191 7.1e-29 132.1 143 56.6
PSO063G0624 Papaver somniferum HOM05D001647 ORTHO05D001191 2.1e-28 130.6 152 55.9
vmacro05874 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 2.1e-28 130.6 132 61.4
HPP92_000950 Vanilla planifolia HOM05D001647 ORTHO05D001191 3.5e-28 129.8 137 56.2
Nitab4.5_0000489g0100 Nicotiana tabacum HOM05D001647 ORTHO05D001191 6.0e-28 129.0 143 55.2
PSO067G0082 Papaver somniferum HOM05D001647 ORTHO05D001191 1.0e-27 128.3 152 54.6
Ah.01g006080 Amaranthus hybridus HOM05D001647 ORTHO05D001191 8.7e-27 125.2 150 52.7
EL10Ac9g21672 Beta vulgaris HOM05D001647 ORTHO05D001191 1.9e-26 124.0 132 56.8
Sc18g0005250 Simmondsia chinensis HOM05D001647 ORTHO05D001191 2.1e-25 120.6 148 52.7
SHI16456 Sapria himalayana HOM05D001647 ORTHO05D001191 6.2e-25 119.0 137 55.5
Nitab4.5_0000065g0270 Nicotiana tabacum HOM05D001647 ORTHO05D001191 5.8e-23 112.5 134 51.5
ATR0824G238 Amborella trichopoda HOM05D001647 ORTHO05D001191 2.7e-20 103.6 151 47.7
Actinidia36122 Actinidia chinensis HOM05D001647 ORTHO05D001191 1.1e-18 98.2 171 43.9
CDE10G0781 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 3.3e-18 96.7 124 54.0
AUR62010426 Chenopodium quinoa HOM05D001647 ORTHO05D001191 4.8e-17 92.8 87 62.1
AUR62016795 Chenopodium quinoa HOM05D001647 ORTHO05D001191 4.8e-17 92.8 87 62.1
CDE10G1164 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 1.4e-16 91.3 122 53.3
Oeu032634.1 Olea europaea HOM05D001647 ORTHO05D001191 5.5e-13 79.3 95 52.6
SEGI_32949 Sequoiadendron giganteum HOM05D001647 ORTHO05D001191 2.7e-12 77.0 49 75.5
Oeu054628.1 Olea europaea HOM05D001647 ORTHO05D001191 2.0e-07 60.8 88 47.7


User provided reference genes

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