Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-232 809.3 389 100.0
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 6.4e-232 807.0 389 99.7
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 3.8e-224 781.2 389 97.4
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-223 779.6 389 97.2
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.1e-222 775.4 393 96.2
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-216 756.1 366 99.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-212 743.0 366 99.2
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 4.3e-212 741.1 390 92.8
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.0e-210 734.6 391 92.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.5e-209 732.6 392 92.3
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.0e-209 732.3 390 92.1
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 2.6e-209 731.9 386 93.5
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 5.8e-209 730.7 392 91.8
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.4e-207 726.1 395 91.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 3.2e-207 724.9 394 91.4
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 4.2e-207 724.5 397 90.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-205 719.9 397 90.7
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.0e-205 719.9 397 90.7
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 5.1e-205 717.6 399 89.7
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 5.3e-194 681.0 390 84.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.0e-192 674.5 388 85.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.1e-191 673.3 391 84.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 6.1e-182 641.0 394 80.2
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.9e-181 638.3 384 81.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.2e-179 632.5 393 78.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.2e-179 632.5 390 79.7
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 4.8e-179 631.3 393 78.6
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-178 629.8 388 78.1
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-178 629.4 387 78.8
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.4e-178 629.0 347 85.3
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.4e-178 629.0 343 86.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.4e-178 629.0 392 79.8
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.4e-178 629.0 397 78.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.1e-178 628.6 358 83.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.2e-177 626.7 390 79.0
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.2e-177 626.7 391 78.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.2e-177 626.7 384 79.2
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.2e-177 626.7 396 78.0
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.5e-177 626.3 382 80.6
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.6e-177 625.5 351 84.9
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 3.5e-177 625.2 387 77.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.5e-177 625.2 389 78.9
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 5.9e-177 624.4 401 75.6
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 5.9e-177 624.4 399 77.2
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 7.7e-177 624.0 346 85.0
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 7.7e-177 624.0 396 77.0
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.0e-176 623.6 387 76.5
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.0e-176 623.6 400 76.5
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.3e-176 623.2 389 78.1
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.3e-176 623.2 360 81.9
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.3e-176 623.2 343 86.0
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.2e-176 622.5 387 77.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 3.8e-176 621.7 392 77.6
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 5.0e-176 621.3 400 77.0
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.5e-176 620.9 394 78.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 1.1e-175 620.2 379 79.2
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-175 620.2 390 78.2
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-175 619.8 392 78.3
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.4e-175 619.8 380 79.7
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.4e-175 619.8 340 85.3
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.9e-175 619.4 385 79.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.9e-175 619.4 368 79.9
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.5e-175 619.0 395 77.5
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.5e-175 619.0 390 78.2
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.5e-175 619.0 382 78.5
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.2e-175 618.6 390 77.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.2e-175 618.2 403 75.9
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.2e-175 617.5 354 83.3
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.2e-174 616.7 343 85.1
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.2e-174 616.7 344 85.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 4.7e-174 614.8 338 87.0
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.1e-174 614.4 397 76.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 3.9e-173 611.7 389 76.1
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.2e-173 611.3 388 76.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 3.3e-172 608.6 341 85.3
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 9.7e-172 607.1 386 75.6
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.7e-172 607.1 404 75.2
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 9.7e-172 607.1 405 73.8
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.3e-171 606.7 391 77.0
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.2e-171 605.9 390 77.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.2e-171 605.9 390 75.1
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.7e-171 605.1 398 76.1
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 8.2e-171 604.0 395 75.9
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.2e-171 604.0 390 75.6
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-170 603.6 398 75.4
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 2.4e-170 602.4 386 76.2
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.4e-170 602.4 427 71.2
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 5.3e-170 601.3 377 77.5
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.2e-169 600.1 400 74.2
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.2e-169 600.1 391 76.2
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 3.5e-169 598.6 339 84.4
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.0e-168 597.0 398 74.9
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.0e-168 597.0 403 73.4
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.7e-168 596.3 369 77.0
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 2.2e-168 595.9 341 82.7
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.8e-168 595.1 375 77.9
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.5e-167 593.2 400 73.8
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.9e-167 592.8 365 77.0
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 5.5e-167 591.3 403 72.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.6e-166 589.7 341 82.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 4.7e-166 588.2 462 65.4
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.4e-165 586.6 377 76.4
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 9.7e-164 580.5 308 87.0
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.2e-163 579.3 383 73.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.8e-163 578.2 302 88.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 7.0e-162 574.3 377 75.3
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.2e-159 564.3 318 84.3
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 8.8e-157 557.4 372 73.4
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.8e-157 557.4 364 75.8
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.0e-153 546.2 396 70.2
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.7e-153 545.8 367 71.9
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.8e-152 542.0 399 69.4
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 5.0e-152 541.6 497 57.9
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 8.6e-152 540.8 348 74.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 5.5e-151 538.1 367 70.0
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 5.5e-151 538.1 552 54.7
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.1e-150 534.6 341 74.2
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 3.0e-149 532.3 550 53.1
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 7.5e-148 527.7 243 100.0
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 7.5e-148 527.7 343 75.5
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.4e-146 521.5 337 72.1
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 5.4e-146 521.5 303 78.9
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 8.9e-133 477.6 341 66.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.0e-128 462.6 322 70.5
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.5e-127 459.5 400 63.5
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.5e-121 439.1 344 60.8
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.3e-119 432.2 308 66.2
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.8e-113 411.4 289 71.6
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.8e-109 400.2 254 76.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.1e-105 386.7 285 69.5
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.7e-104 383.6 212 85.4
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.8e-100 368.6 322 55.9
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 7.6e-100 368.2 236 78.8
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 4.2e-98 362.5 340 53.8
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.8e-94 349.0 234 73.5
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 6.0e-89 332.0 288 54.5
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.6e-87 324.7 205 75.1
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 7.2e-66 255.4 320 41.9
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.1e-65 253.8 335 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 4.7e-65 252.7 318 42.5
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 6.1e-65 252.3 127 90.6
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 7.9e-65 251.9 341 40.2
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 6.7e-64 248.8 310 43.2
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 2.9e-59 233.4 320 40.3
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 6.3e-54 215.7 179 62.0
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.1e-53 214.9 335 38.5
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.7e-51 207.6 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.4e-45 188.0 115 80.9
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.7e-43 181.0 155 59.4
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 8.3e-30 135.6 92 71.7
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 6.2e-25 119.4 107 64.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.6e-23 114.0 157 43.9
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.6e-23 114.0 56 87.5
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.4e-21 106.3 62 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 6.2e-17 92.8 165 44.2
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 5.8e-15 86.3 83 60.2
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.9e-14 83.2 49 73.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 8.6e-11 72.4 33 84.8
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.7e-09 66.6 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.6e-07 60.8 43 62.8


User provided reference genes

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