Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p44110 Brassica napus HOM05D001752 ORTHO05D040317 1.3e-45 186.0 96 100.0
BolC8t51959H Brassica oleracea HOM05D001752 ORTHO05D040317 8.9e-34 146.7 96 85.4
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.3e-18 95.5 206 37.4
AL7G51010 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 2.3e-18 95.5 206 37.4
Thhalv10007715m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 1.2e-17 93.2 206 36.9
AT1G17050 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 2.6e-17 92.0 206 36.4
Aa31LG7G1880 Aethionema arabicum HOM05D001752 ORTHO05D005237 3.4e-17 91.7 206 36.4
CARHR017580 Cardamine hirsuta HOM05D001752 ORTHO05D005237 3.4e-17 91.7 206 36.4
Sp1g15170 Schrenkiella parvula HOM05D001752 ORTHO05D005237 3.4e-17 91.7 206 36.4
BcaC05g25678 Brassica carinata HOM05D001752 ORTHO05D005237 7.6e-17 90.5 206 36.4
C05p15370 Brassica napus HOM05D001752 ORTHO05D005237 7.6e-17 90.5 206 36.4
BolC5t30243H Brassica oleracea HOM05D001752 ORTHO05D005237 7.6e-17 90.5 206 36.4
Carub.0001s1677 Capsella rubella HOM05D001752 ORTHO05D005237 7.6e-17 90.5 206 35.9
CARHR072000 Cardamine hirsuta HOM05D001752 ORTHO05D005237 7.6e-17 90.5 206 35.4
BcaB02g06681 Brassica carinata HOM05D001752 ORTHO05D005237 9.9e-17 90.1 206 36.4
A06p12950 Brassica napus HOM05D001752 ORTHO05D005237 3.7e-16 88.2 206 35.9
BraA06t24454Z Brassica rapa HOM05D001752 ORTHO05D005237 3.7e-16 88.2 206 35.9
AT1G78510 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 6.4e-16 87.4 206 34.5
A07p43780 Brassica napus HOM05D001752 ORTHO05D005237 1.4e-15 86.3 206 34.5
BraA07t31886Z Brassica rapa HOM05D001752 ORTHO05D005237 1.4e-15 86.3 206 34.5
BcaB03g16025 Brassica carinata HOM05D001752 ORTHO05D005237 2.4e-15 85.5 206 34.5
Carub.0002s2536 Capsella rubella HOM05D001752 ORTHO05D005237 3.2e-15 85.1 206 34.0
Sp5g33600 Schrenkiella parvula HOM05D001752 ORTHO05D005237 4.1e-15 84.7 206 34.5
BcaC08g47421 Brassica carinata HOM05D001752 ORTHO05D005237 7.1e-15 84.0 206 34.0
C06p52420 Brassica napus HOM05D001752 ORTHO05D005237 7.1e-15 84.0 206 34.0
BolC6t40261H Brassica oleracea HOM05D001752 ORTHO05D005237 7.1e-15 84.0 206 34.0
Thhalv10018616m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 1.6e-14 82.8 206 34.5
THA.LOC104812299 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 1.6e-14 82.8 206 34.0
AL2G38910 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 2.7e-14 82.0 206 33.5
CANSAT56G3507 Cannabis sativa HOM05D001752 ORTHO05D005237 2.3e-13 79.0 206 33.5
RcHm_v2.0_Chr5g0028851 Rosa chinensis HOM05D001752 ORTHO05D005237 2.3e-13 79.0 206 32.5
THA.LOC104813987 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 2.3e-13 79.0 206 32.5
Eucgr.F03219 Eucalyptus grandis HOM05D001752 ORTHO05D005237 5.1e-13 77.8 206 33.0
Eucgr.L03208 Eucalyptus grandis HOM05D001752 ORTHO05D005237 5.1e-13 77.8 206 33.0
PGR031G0641 Punica granatum HOM05D001752 ORTHO05D005237 5.1e-13 77.8 206 32.5
Sed0013121 Sechium edule HOM05D001752 ORTHO05D005237 6.6e-13 77.4 206 32.0
Gohir.A13G151300 Gossypium hirsutum HOM05D001752 ORTHO05D005237 1.1e-12 76.6 206 33.0
CiPaw.12G046600 Carya illinoinensis HOM05D001752 ORTHO05D005237 1.5e-12 76.3 206 32.0
Gohir.D13G155500 Gossypium hirsutum HOM05D001752 ORTHO05D005237 1.5e-12 76.3 206 33.0
Gorai.013G176100 Gossypium raimondii HOM05D001752 ORTHO05D005237 1.5e-12 76.3 206 33.0
Thecc.07G140500 Theobroma cacao HOM05D001752 ORTHO05D005237 1.5e-12 76.3 206 33.0
CSS0035593 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 1.9e-12 75.9 206 33.0
Cfa019489 Carpinus fangiana HOM05D001752 ORTHO05D005237 1.9e-12 75.9 206 31.6
Haze_08466 Corylus avellana HOM05D001752 ORTHO05D005237 2.5e-12 75.5 206 31.1
Duzib187G0679 Durio zibethinus HOM05D001752 ORTHO05D005237 2.5e-12 75.5 206 32.0
MD03G1252200 Malus domestica HOM05D001752 ORTHO05D005237 2.5e-12 75.5 206 32.5
Manes.15G100400 Manihot esculenta HOM05D001752 ORTHO05D005237 2.5e-12 75.5 206 32.0
FvH4_3g17330 Fragaria vesca HOM05D001752 ORTHO05D005237 4.3e-12 74.7 206 31.6
FAN11G0153 Fragaria x ananassa HOM05D001752 ORTHO05D005237 4.3e-12 74.7 206 31.6
MD11G1273800 Malus domestica HOM05D001752 ORTHO05D005237 4.3e-12 74.7 206 32.0
Os12g0271700 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 4.3e-12 74.7 206 31.6
Peaxi162Scf00111g01144 Petunia axillaris HOM05D001752 ORTHO05D005237 4.3e-12 74.7 206 31.1
Sed0021402 Sechium edule HOM05D001752 ORTHO05D005237 5.6e-12 74.3 206 32.0
Os05g0582300 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 1.2e-11 73.2 206 30.6
TWI39G0829 Tripterygium wilfordii HOM05D001752 ORTHO05D005237 1.2e-11 73.2 206 31.1
BolC5t30248H Brassica oleracea HOM05D030952 ORTHO05D026860 1.6e-11 72.8 45 84.4
CSS0015991 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 1.6e-11 72.8 206 32.0
Ciclev10020312m.g Citrus clementina HOM05D001752 ORTHO05D005237 1.6e-11 72.8 202 32.2
FAN25G2993 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.6e-11 72.8 206 32.0
PSO541G0989 Papaver somniferum HOM05D001752 ORTHO05D005237 1.6e-11 72.8 206 31.6
Prupe.4G153300 Prunus persica HOM05D001752 ORTHO05D005237 1.6e-11 72.8 206 32.0
Aqoxy1G01776 Aquilegia oxysepala HOM05D001752 ORTHO05D005237 2.8e-11 72.0 206 31.1
EL10Ac4g08456 Beta vulgaris HOM05D001752 ORTHO05D005237 2.8e-11 72.0 206 33.0
PGSC0003DMG400007081 Solanum tuberosum HOM05D001752 ORTHO05D005237 3.6e-11 71.6 206 30.6
CAN.G375.68 Capsicum annuum HOM05D001752 ORTHO05D005237 4.7e-11 71.2 206 31.1
Dinv26692 Davidia involucrata HOM05D001752 ORTHO05D005237 4.7e-11 71.2 206 30.6
FAN21G3597 Fragaria x ananassa HOM05D001752 ORTHO05D005237 6.2e-11 70.9 206 31.6
QL08p027904 Quercus lobata HOM05D001752 ORTHO05D005237 6.2e-11 70.9 204 30.4
C05p15410 Brassica napus HOM05D030952 ORTHO05D026860 8.1e-11 70.5 45 82.2
MSTRG.6698 Avicennia marina HOM05D001752 ORTHO05D005237 1.1e-10 70.1 206 30.1
DCAR_019630 Daucus carota HOM05D001752 ORTHO05D005237 1.1e-10 70.1 206 31.6
Lalb_Chr01g0016221 Lupinus albus HOM05D001752 ORTHO05D005237 1.1e-10 70.1 204 30.9
MBI10_g03528_MAGBIO Magnolia biondii HOM05D001752 ORTHO05D005237 1.1e-10 70.1 206 30.1
Solyc07g061990.3 Solanum lycopersicum HOM05D001752 ORTHO05D005237 1.1e-10 70.1 206 30.1
THA.LOC104813301 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 1.1e-10 70.1 46 76.1
GSVIVG01014066001 Vitis vinifera HOM05D001752 ORTHO05D005237 1.1e-10 70.1 206 30.1
Glyma.13G262200 Glycine max HOM05D001752 ORTHO05D005237 1.4e-10 69.7 204 30.4
Nitab4.5_0001140g0030 Nicotiana tabacum HOM05D001752 ORTHO05D005237 1.4e-10 69.7 206 30.1
Nitab4.5_0007036g0010 Nicotiana tabacum HOM05D001752 ORTHO05D005237 1.4e-10 69.7 206 30.1
PSO675G8508 Papaver somniferum HOM05D001752 ORTHO05D005237 1.4e-10 69.7 206 31.1
vmacro11993 Vaccinium macrocarpon HOM05D001752 ORTHO05D005237 1.4e-10 69.7 206 30.1
AUR62019685 Chenopodium quinoa HOM05D001752 ORTHO05D005237 1.8e-10 69.3 206 32.0
Sabra16G0250700 Salix brachista HOM05D001752 ORTHO05D005237 1.8e-10 69.3 206 30.1
CsaV3_4G007960 Cucumis sativus L. HOM05D001752 ORTHO05D005237 2.4e-10 68.9 206 30.6
Lj8A144T69 Lonicera japonica HOM05D001752 ORTHO05D005237 2.4e-10 68.9 206 31.6
Hund10378 Selenicereus undatus HOM05D001752 ORTHO05D005237 2.4e-10 68.9 206 31.6
Actinidia12617 Actinidia chinensis HOM05D001752 ORTHO05D005237 3.1e-10 68.6 206 30.6
Sopen07g030260 Solanum pennellii HOM05D001752 ORTHO05D005237 3.1e-10 68.6 206 29.6
Cpa.g.sc1272.2 Carica papaya HOM05D001752 ORTHO05D005237 4.0e-10 68.2 206 31.6
AUR62039570 Chenopodium quinoa HOM05D001752 ORTHO05D005237 4.0e-10 68.2 206 31.6
TPR.G6839 Trifolium pratense HOM05D001752 ORTHO05D005237 4.0e-10 68.2 204 30.4
CSS0031554 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 5.2e-10 67.8 204 30.9
MELO3C016140.2 Cucumis melo HOM05D001752 ORTHO05D005237 5.2e-10 67.8 206 30.1
Migut.M00682 Erythranthe guttata HOM05D001752 ORTHO05D005237 5.2e-10 67.8 206 30.1
Hma1.2p1_0713F.1_g207770 Hydrangea macrophylla HOM05D001752 ORTHO05D005237 5.2e-10 67.8 206 29.6
Rhsim06G0187500 Rhododendron simsii HOM05D001752 ORTHO05D005237 5.2e-10 67.8 206 30.6
THA.LOC104822586 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 5.2e-10 67.8 206 29.6
Glyma.15G243100 Glycine max HOM05D001752 ORTHO05D005237 6.8e-10 67.4 204 30.4
Lj3g0019503 Lotus japonicus HOM05D001752 ORTHO05D005237 6.8e-10 67.4 204 30.4
Lalb_Chr20g0109041 Lupinus albus HOM05D001752 ORTHO05D005237 6.8e-10 67.4 204 29.4
Psat1g006600 Pisum sativum HOM05D001752 ORTHO05D005237 6.8e-10 67.4 204 30.4
Cc05_g10510 Coffea canephora HOM05D001752 ORTHO05D005237 1.2e-09 66.6 204 28.9
Oeu025324.1 Olea europaea HOM05D001752 ORTHO05D005237 1.2e-09 66.6 204 29.4
DCAR_017581 Daucus carota HOM05D001752 ORTHO05D005237 1.5e-09 66.2 206 30.1
FAN16G0271 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.5e-09 66.2 72 48.6
arahy.Tifrunner.gnm1.ann1.1MPM44 Arachis hypogaea HOM05D001752 ORTHO05D005237 2.0e-09 65.9 204 30.4
arahy.Tifrunner.gnm1.ann1.XQ2AST Arachis hypogaea HOM05D001752 ORTHO05D005237 2.0e-09 65.9 204 30.4
CDE02G0912 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 2.0e-09 65.9 206 29.6
CDE09G0513 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 2.6e-09 65.5 206 29.6
Ca_03415_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 2.6e-09 65.5 204 29.4
Ca_29740_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 2.6e-09 65.5 204 29.4
ECA234G2248 Erigeron canadensis HOM05D001752 ORTHO05D005237 2.6e-09 65.5 206 29.6
Sc03g0010800 Simmondsia chinensis HOM05D001752 ORTHO05D005237 2.6e-09 65.5 206 29.6
TAR629G1663 Trochodendron aralioides HOM05D001752 ORTHO05D005237 2.6e-09 65.5 206 30.6
Medtr2g072470 Medicago truncatula HOM05D001752 ORTHO05D005237 3.4e-09 65.1 204 29.9
Phvul.005G064200 Phaseolus vulgaris HOM05D001752 ORTHO05D005237 3.4e-09 65.1 204 29.9
Migut.M00683 Erythranthe guttata HOM05D001752 ORTHO05D005237 5.8e-09 64.3 206 29.6
TAR627G1108 Trochodendron aralioides HOM05D001752 ORTHO05D005237 7.6e-09 63.9 206 30.1
VMungo1080G1543 Vigna mungo HOM05D001752 ORTHO05D005237 7.6e-09 63.9 204 29.4
Gohir.D09G067700 Gossypium hirsutum HOM05D001752 ORTHO05D005237 9.9e-09 63.5 72 48.6
Gorai.006G082100 Gossypium raimondii HOM05D001752 ORTHO05D005237 9.9e-09 63.5 72 48.6
Zm00001eb299390 Zea mays HOM05D001752 ORTHO05D005237 9.9e-09 63.5 81 45.7
Lj1A821G46 Lonicera japonica HOM05D001752 ORTHO05D005237 1.7e-08 62.8 206 28.6
Zm00001eb297120 Zea mays HOM05D001752 ORTHO05D005237 2.2e-08 62.4 205 28.3
Actinidia07515 Actinidia chinensis HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
MSTRG.14259 Avicennia marina HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
Migut.H02035 Erythranthe guttata HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
HanXRQChr10g0305631 Helianthus annuus HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
HanXRQChr12g0373361 Helianthus annuus HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
Oeu050685.1 Olea europaea HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
SalBow7G0098 Salvia bowleyana HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
SalBow7G0347 Salvia bowleyana HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
SGA_v2.0_scaffold4G02146 Striga asiatica HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
unitig_37.g12550 Utricularia gibba HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
unitig_46.g18306 Utricularia gibba HOM05D001752 ORTHO05D005237 6.4e-08 60.8 37 81.1
COL.COLO4_17445 Corchorus olitorius HOM05D001752 ORTHO05D005237 1.1e-07 60.1 37 78.4
Nn4g26511 Nelumbo nucifera HOM05D001752 ORTHO05D005237 1.1e-07 60.1 37 78.4
Potri.001G380500 Populus trichocarpa HOM05D001752 ORTHO05D005237 1.1e-07 60.1 37 78.4
SMO201G0139 Selaginella moellendorffii HOM05D001752 ORTHO05D005237 1.4e-07 59.7 37 78.4
MSTRG.14994 Avicennia marina HOM05D001752 ORTHO05D005237 1.9e-07 59.3 37 78.4
Dinv13346 Davidia involucrata HOM05D001752 ORTHO05D005237 2.4e-07 58.9 37 78.4
Mapoly0058s0036 Marchantia polymorpha HOM05D001752 ORTHO05D005237 3.2e-07 58.5 36 77.8
SGA_v2.0_scaffold130G34245 Striga asiatica HOM05D001752 ORTHO05D005237 3.2e-07 58.5 39 74.4
Nn3g20662 Nelumbo nucifera HOM05D001752 ORTHO05D005237 4.2e-07 58.2 37 75.7
ClCG07G010380 Citrullus lanatus HOM05D001752 ORTHO05D005237 7.1e-07 57.4 37 78.4
Pp3c16_16550 Physcomitrium patens HOM05D001752 ORTHO05D005237 7.1e-07 57.4 36 75.0
Pp3c27_1880 Physcomitrium patens HOM05D001752 ORTHO05D005237 7.1e-07 57.4 36 75.0
THA.LOC104810419 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 7.1e-07 57.4 206 26.2
Dinv13333 Davidia involucrata HOM05D001752 ORTHO05D005237 9.3e-07 57.0 72 44.4
HPP92_010049 Vanilla planifolia HOM05D001752 ORTHO05D005237 9.3e-07 57.0 37 73.0
ATR1153G023 Amborella trichopoda HOM05D001752 ORTHO05D005237 1.2e-06 56.6 37 75.7
Potri.011G099500 Populus trichocarpa HOM05D001752 ORTHO05D005237 1.6e-06 56.2 47 53.2
Potri.011G101200 Populus trichocarpa HOM05D001752 ORTHO05D005237 1.6e-06 56.2 47 53.2
Potri.011G101301 Populus trichocarpa HOM05D001752 ORTHO05D005237 1.6e-06 56.2 47 53.2
AagrBONN_evm.TU.Sc2ySwM_228.153 Anthoceros agrestis HOM05D001752 ORTHO05D005237 2.1e-06 55.8 36 72.2
MCO05G629 Micromonas commoda HOM05D001752 ORTHO05D005237 7.8e-06 53.9 36 69.4


User provided reference genes

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