Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 2.6e-162 575.5 326 100.0
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 3.9e-142 508.4 326 92.3
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 3.1e-115 419.1 284 89.8
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 3.1e-115 419.1 284 89.8
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 2.3e-113 412.9 278 91.4
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 8.0e-111 404.4 278 86.0
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.4e-102 377.1 278 73.0
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 3.7e-100 369.0 235 81.3
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.9e-99 366.7 279 79.9
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.2e-98 364.0 278 75.9
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 7.8e-98 361.3 217 87.1
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 3.9e-97 359.0 278 69.1
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 1.9e-96 356.7 235 76.6
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.2e-87 327.4 235 69.8
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 9.6e-80 301.2 236 63.6
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 2.2e-76 290.0 248 60.9
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.4e-75 286.6 236 60.6
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 7.1e-75 285.0 198 71.7
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 2.1e-74 283.5 268 57.5
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 4.6e-74 282.3 234 62.0
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 1.7e-73 280.4 235 61.3
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.5e-72 276.6 236 59.3
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.3e-72 276.2 234 62.4
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 4.3e-72 275.8 234 62.4
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 5.6e-72 275.4 234 58.1
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 5.6e-72 275.4 234 58.1
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.6e-72 275.4 234 58.1
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 9.6e-72 274.6 235 59.6
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 3.6e-71 272.7 233 60.9
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 1.1e-70 271.2 236 58.5
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.1e-70 271.2 235 58.7
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 1.1e-70 271.2 236 58.1
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.1e-70 271.2 236 58.9
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.8e-70 270.4 237 56.5
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 3.1e-70 269.6 232 60.3
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.0e-70 269.2 232 60.3
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 4.0e-70 269.2 234 56.8
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 4.0e-70 269.2 241 59.8
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 4.0e-70 269.2 233 56.7
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 9.0e-70 268.1 242 59.5
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 9.0e-70 268.1 240 59.6
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.5e-69 267.3 241 58.1
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 2.0e-69 266.9 235 59.1
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 4.5e-69 265.8 242 57.0
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 7.6e-69 265.0 236 58.1
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 9.9e-69 264.6 234 56.4
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.3e-68 264.2 236 55.9
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.2e-68 263.5 237 58.2
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 3.8e-68 262.7 233 57.5
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 4.9e-68 262.3 235 57.0
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.1e-67 261.2 229 59.8
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.4e-67 260.8 234 57.3
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.4e-67 260.8 237 57.4
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.9e-67 260.4 233 59.2
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 1.2e-66 257.7 233 56.7
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.2e-66 257.7 235 59.6
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 1.2e-66 257.7 229 57.2
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 1.6e-66 257.3 232 57.8
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 2.1e-66 256.9 237 57.0
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.7e-66 256.5 235 57.4
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 3.5e-66 256.1 235 56.2
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 6.0e-66 255.4 218 59.6
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 7.9e-66 255.0 241 57.7
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 2.3e-65 253.4 235 56.6
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 3.9e-65 252.7 241 55.2
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 8.7e-65 251.5 237 55.3
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.5e-64 250.8 184 66.8
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 2.5e-64 250.0 232 56.9
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 3.3e-64 249.6 231 57.1
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 4.3e-64 249.2 235 54.9
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 9.6e-64 248.1 229 54.6
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.3e-63 247.7 218 56.9
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 2.8e-63 246.5 235 55.7
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 2.8e-63 246.5 236 55.1
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.7e-63 246.1 235 54.0
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 4.8e-63 245.7 229 55.5
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 6.2e-63 245.4 228 56.1
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 6.2e-63 245.4 230 56.1
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.1e-62 244.6 235 53.6
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.4e-62 244.2 237 53.6
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 1.8e-62 243.8 232 54.7
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.4e-62 243.4 234 53.8
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 3.1e-62 243.0 248 53.6
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.0e-62 242.7 235 53.6
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.3e-62 242.3 234 56.4
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 6.9e-62 241.9 184 66.3
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 6.9e-62 241.9 237 52.7
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 6.9e-62 241.9 273 49.5
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 6.9e-62 241.9 234 53.4
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 1.2e-61 241.1 234 53.4
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.5e-61 240.7 230 53.9
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 2.0e-61 240.4 232 55.2
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 2.0e-61 240.4 232 54.3
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.0e-61 240.4 222 55.0
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 9.9e-61 238.0 233 53.2
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.7e-60 237.3 188 62.8
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 2.9e-60 236.5 235 54.0
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 6.4e-60 235.3 239 51.5
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.1e-59 234.6 239 50.6
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.4e-59 233.4 241 52.3
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 5.5e-59 232.3 232 53.9
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 7.1e-59 231.9 235 50.2
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 3.0e-57 226.5 280 47.5
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 2.5e-56 223.4 284 50.4
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.6e-56 222.2 171 63.7
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.3e-55 221.1 233 51.1
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.7e-55 219.5 211 64.5
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.4e-54 217.6 130 87.7
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.8e-54 217.2 189 59.8
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 3.4e-53 213.0 182 57.1
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.2e-52 210.3 229 49.3
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 3.8e-52 209.5 183 58.5
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 3.8e-52 209.5 236 47.9
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.1e-51 208.0 162 62.3
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 4.2e-51 206.1 219 52.1
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 5.5e-51 205.7 229 48.5
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 1.6e-50 204.1 241 44.0
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 3.5e-50 203.0 234 45.7
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 4.6e-50 202.6 239 49.8
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 1.5e-48 197.6 233 46.8
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 9.4e-43 178.3 164 55.5
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 4.6e-42 176.0 119 68.1
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 2.3e-41 173.7 179 50.8
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 9.1e-38 161.8 169 50.3
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.2e-37 161.4 175 45.7
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 4.5e-29 132.9 111 60.4
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 1.4e-27 127.9 175 46.9
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 1.4e-27 127.9 191 45.0
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 3.2e-27 126.7 105 58.1
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 5.5e-27 125.9 175 46.3
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 4.7e-26 122.9 140 46.4
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 8.8e-25 118.6 121 49.6
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 7.4e-24 115.5 71 91.5
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 4.1e-22 109.8 189 34.4
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 7.0e-22 109.0 61 95.1
C06p46790 Brassica napus HOM05D005088 ORTHO05D017652 8.5e-20 102.1 63 88.9
BolC2t09028H Brassica oleracea HOM05D005088 ORTHO05D017652 1.5e-19 101.3 61 90.2
C05p10570 Brassica napus HOM05D005088 ORTHO05D017652 3.2e-19 100.1 61 90.2
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 1.2e-18 98.2 146 41.8
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 4.7e-18 96.3 62 71.0
SpUn0056_0040 Schrenkiella parvula HOM05D005088 ORTHO05D017652 3.7e-15 86.7 58 74.1
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 4.5e-13 79.7 42 85.7


User provided reference genes

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