Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p28790 Brassica napus HOM05D002718 ORTHO05D003269 3.2e-147 525.0 253 100.0
C01p28220 Brassica napus HOM05D002718 ORTHO05D003269 5.8e-109 397.9 204 95.6
BcaB08g35974 Brassica carinata HOM05D002718 ORTHO05D003269 1.1e-107 393.7 208 92.8
BcaC04g20159 Brassica carinata HOM05D002718 ORTHO05D003269 1.4e-107 393.3 208 93.3
BraA10t43426Z Brassica rapa HOM05D002718 ORTHO05D003269 1.4e-107 393.3 209 93.3
BolC9t57573H Brassica oleracea HOM05D002718 ORTHO05D003269 9.3e-107 390.6 210 92.9
Thhalv10012582m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 1.9e-104 382.9 209 91.9
Sp6g17930 Schrenkiella parvula HOM05D002718 ORTHO05D003269 5.3e-102 374.8 209 90.0
Carub.0005s0889 Capsella rubella HOM05D002718 ORTHO05D003269 5.8e-101 371.3 205 90.2
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.7e-100 369.8 195 93.8
AT3G42850 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 3.5e-98 362.1 204 88.7
AL5G21150 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 4.6e-98 361.7 204 88.2
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 4.6e-98 361.7 193 93.3
THA.LOC104810997 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 2.2e-87 326.2 201 78.1
Cpa.g.sc115.31 Carica papaya HOM05D002718 ORTHO05D003269 5.7e-80 301.6 201 73.1
Gohir.A06G107500 Gossypium hirsutum HOM05D002718 ORTHO05D003269 1.7e-79 300.1 203 69.0
Gohir.D06G109800 Gossypium hirsutum HOM05D002718 ORTHO05D003269 1.7e-79 300.1 203 69.0
Gorai.010G124600 Gossypium raimondii HOM05D002718 ORTHO05D003269 1.7e-79 300.1 203 69.0
COL.COLO4_18626 Corchorus olitorius HOM05D002718 ORTHO05D003269 2.2e-79 299.7 204 67.6
Duzib168G0110 Durio zibethinus HOM05D002718 ORTHO05D003269 3.7e-79 298.9 203 68.5
GSVIVG01032250001 Vitis vinifera HOM05D002718 ORTHO05D003269 4.8e-79 298.5 205 70.2
TAR383G0086 Trochodendron aralioides HOM05D002718 ORTHO05D003269 1.4e-78 297.0 203 70.4
Cfa013311 Carpinus fangiana HOM05D002718 ORTHO05D003269 3.1e-78 295.8 207 68.1
Ciclev10007339m.g Citrus clementina HOM05D002718 ORTHO05D003269 4.1e-78 295.4 201 68.7
Hma1.2p1_0284F.1_g113850 Hydrangea macrophylla HOM05D002718 ORTHO05D003269 4.1e-78 295.4 199 70.4
SGA_v2.0_scaffold27G11655 Striga asiatica HOM05D002718 ORTHO05D003269 5.3e-78 295.0 204 69.1
CiPaw.07G209700 Carya illinoinensis HOM05D002718 ORTHO05D003269 6.9e-78 294.7 204 66.7
Nitab4.5_0001535g0040 Nicotiana tabacum HOM05D002718 ORTHO05D003269 6.9e-78 294.7 203 69.0
Potri.018G003100 Populus trichocarpa HOM05D002718 ORTHO05D003269 6.9e-78 294.7 201 69.7
QL12p025880 Quercus lobata HOM05D002718 ORTHO05D003269 6.9e-78 294.7 199 69.3
CiPaw.08G021400 Carya illinoinensis HOM05D002718 ORTHO05D003269 9.1e-78 294.3 199 69.8
Eucgr.C02132 Eucalyptus grandis HOM05D002718 ORTHO05D003269 2.6e-77 292.7 203 68.0
Sabra18G0002900 Salix brachista HOM05D002718 ORTHO05D003269 3.4e-77 292.4 201 68.7
Sabra18G0006300 Salix brachista HOM05D002718 ORTHO05D003269 3.4e-77 292.4 201 68.7
TWI32G0829 Tripterygium wilfordii HOM05D002718 ORTHO05D003269 3.4e-77 292.4 198 67.7
Sed0009215 Sechium edule HOM05D002718 ORTHO05D003269 4.5e-77 292.0 199 68.3
Atru.chr7.2686 Acer truncatum HOM05D002718 ORTHO05D003269 5.9e-77 291.6 206 66.5
Rhsim04G0184400 Rhododendron simsii HOM05D002718 ORTHO05D003269 5.9e-77 291.6 203 68.5
Cc00_g00350 Coffea canephora HOM05D002718 ORTHO05D003269 7.7e-77 291.2 202 68.3
Nitab4.5_0000899g0120 Nicotiana tabacum HOM05D002718 ORTHO05D003269 7.7e-77 291.2 201 68.2
PSO675G7617 Papaver somniferum HOM05D002718 ORTHO05D003269 1.0e-76 290.8 217 66.8
Potri.018G145700 Populus trichocarpa HOM05D002718 ORTHO05D003269 1.0e-76 290.8 202 69.3
PGR084G0004 Punica granatum HOM05D002718 ORTHO05D003269 1.0e-76 290.8 202 67.8
PGR142G1783 Punica granatum HOM05D002718 ORTHO05D003269 1.0e-76 290.8 202 67.8
Thecc.09G002800 Theobroma cacao HOM05D002718 ORTHO05D003269 1.0e-76 290.8 203 67.5
Aqoxy4G00376 Aquilegia oxysepala HOM05D002718 ORTHO05D003269 1.7e-76 290.0 199 69.3
CARHR222420 Cardamine hirsuta HOM05D002718 ORTHO05D003269 1.7e-76 290.0 198 68.2
PSO170G4524 Papaver somniferum HOM05D002718 ORTHO05D003269 1.7e-76 290.0 199 69.8
ClCG10G008570 Citrullus lanatus HOM05D002718 ORTHO05D003269 2.2e-76 289.7 199 68.3
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 3.8e-76 288.9 204 66.7
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 3.8e-76 288.9 203 66.0
Nn8g41097 Nelumbo nucifera HOM05D002718 ORTHO05D003269 5.0e-76 288.5 203 68.5
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 6.5e-76 288.1 199 68.8
Lsat_1_v5_gn_3_26460 Lactuca sativa HOM05D002718 ORTHO05D003269 6.5e-76 288.1 205 65.9
Manes.16G137600 Manihot esculenta HOM05D002718 ORTHO05D003269 6.5e-76 288.1 200 68.5
Oeu059291.2 Olea europaea HOM05D002718 ORTHO05D003269 6.5e-76 288.1 199 68.3
PGR142G2777 Punica granatum HOM05D002718 ORTHO05D003269 8.5e-76 287.7 199 66.8
GSVIVG01035565001 Vitis vinifera HOM05D002718 ORTHO05D003269 1.1e-75 287.3 203 67.5
Ca_12844_v3 Cicer arietinum L. HOM05D002718 ORTHO05D003269 1.4e-75 287.0 203 67.0
MELO3C018969.2 Cucumis melo HOM05D002718 ORTHO05D003269 1.4e-75 287.0 199 67.8
CAN.G480.17 Capsicum annuum HOM05D002718 ORTHO05D003269 1.9e-75 286.6 203 67.5
Thhalv10024313m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 1.9e-75 286.6 201 66.7
Peaxi162Scf00320g00216 Petunia axillaris HOM05D002718 ORTHO05D003269 1.9e-75 286.6 202 66.8
VMungo0647G1266 Vigna mungo HOM05D002718 ORTHO05D003269 1.9e-75 286.6 203 67.5
BolC1t02628H Brassica oleracea HOM05D002718 ORTHO05D003269 4.2e-75 285.4 198 67.2
Nitab4.5_0001942g0140 Nicotiana tabacum HOM05D002718 ORTHO05D003269 4.2e-75 285.4 203 67.5
Sabra18G0127600 Salix brachista HOM05D002718 ORTHO05D003269 4.2e-75 285.4 201 67.7
vmacro08496 Vaccinium macrocarpon HOM05D002718 ORTHO05D003269 4.2e-75 285.4 203 66.5
CsaV3_4G009070 Cucumis sativus L. HOM05D002718 ORTHO05D003269 5.5e-75 285.0 199 67.8
MBI16_g37213_MAGBIO Magnolia biondii HOM05D002718 ORTHO05D003269 5.5e-75 285.0 199 65.8
Nitab4.5_0000970g0160 Nicotiana tabacum HOM05D002718 ORTHO05D003269 5.5e-75 285.0 203 67.5
Actinidia25741 Actinidia chinensis HOM05D002718 ORTHO05D003269 7.2e-75 284.6 207 66.2
EL10Ac2g03697 Beta vulgaris HOM05D002718 ORTHO05D003269 7.2e-75 284.6 200 65.5
Lj3C988G10 Lonicera japonica HOM05D002718 ORTHO05D003269 9.4e-75 284.3 199 66.8
CANSAT25G2302 Cannabis sativa HOM05D002718 ORTHO05D003269 1.2e-74 283.9 202 65.3
Lj5g0024079 Lotus japonicus HOM05D002718 ORTHO05D003269 1.2e-74 283.9 202 66.8
Peaxi162Scf00213g00943 Petunia axillaris HOM05D002718 ORTHO05D003269 1.2e-74 283.9 205 66.3
Psat0s2005g0040 Pisum sativum HOM05D002718 ORTHO05D003269 1.2e-74 283.9 203 65.5
PGSC0003DMG400009774 Solanum tuberosum HOM05D002718 ORTHO05D003269 1.2e-74 283.9 197 68.5
BcaC09g50300 Brassica carinata HOM05D002718 ORTHO05D003269 1.6e-74 283.5 198 66.7
C01p26840 Brassica napus HOM05D002718 ORTHO05D003269 1.6e-74 283.5 198 66.7
CANSAT35G0611 Cannabis sativa HOM05D002718 ORTHO05D003269 1.6e-74 283.5 202 64.9
MELO3C003601.2 Cucumis melo HOM05D002718 ORTHO05D003269 1.6e-74 283.5 204 62.7
ECA246G1707 Erigeron canadensis HOM05D002718 ORTHO05D003269 1.6e-74 283.5 199 66.3
FAN20G1933 Fragaria x ananassa HOM05D002718 ORTHO05D003269 1.6e-74 283.5 201 66.2
Prupe.1G456000 Prunus persica HOM05D002718 ORTHO05D003269 1.6e-74 283.5 205 65.9
RcHm_v2.0_Chr6g0305421 Rosa chinensis HOM05D002718 ORTHO05D003269 1.6e-74 283.5 201 66.2
Sp7g14590 Schrenkiella parvula HOM05D002718 ORTHO05D003269 1.6e-74 283.5 198 67.7
Aa31LG10G6050 Aethionema arabicum HOM05D002718 ORTHO05D003269 2.1e-74 283.1 202 66.8
AL7G39040 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 2.1e-74 283.1 198 66.7
A01p21500 Brassica napus HOM05D002718 ORTHO05D003269 2.1e-74 283.1 198 66.2
BraA01t02056Z Brassica rapa HOM05D002718 ORTHO05D003269 2.1e-74 283.1 198 66.2
Sabra18G0120000 Salix brachista HOM05D002718 ORTHO05D003269 2.1e-74 283.1 199 67.8
AT4G16130 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 2.7e-74 282.7 198 66.2
CsaV3_3G047280 Cucumis sativus L. HOM05D002718 ORTHO05D003269 2.7e-74 282.7 202 62.4
SHI02366 Sapria himalayana HOM05D002718 ORTHO05D003269 2.7e-74 282.7 201 67.7
Psat6g034400 Pisum sativum HOM05D002718 ORTHO05D003269 3.6e-74 282.3 203 65.0
Sc06g0001240 Simmondsia chinensis HOM05D002718 ORTHO05D003269 3.6e-74 282.3 200 66.5
THA.LOC104820278 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 3.6e-74 282.3 198 68.2
Carub.0007s2548 Capsella rubella HOM05D002718 ORTHO05D003269 4.7e-74 282.0 198 66.7
MD08G1124400 Malus domestica HOM05D002718 ORTHO05D003269 4.7e-74 282.0 205 64.4
BcaNung00226 Brassica carinata HOM05D002718 ORTHO05D003269 6.1e-74 281.6 198 66.2
Solyc08g069231.1 Solanum lycopersicum HOM05D002718 ORTHO05D003269 6.1e-74 281.6 203 66.0
Sopen00g003670 Solanum pennellii HOM05D002718 ORTHO05D003269 6.1e-74 281.6 198 67.7
Sopen07g005900 Solanum pennellii HOM05D002718 ORTHO05D003269 6.1e-74 281.6 198 67.7
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 7.9e-74 281.2 203 65.0
Lalb_Chr08g0243461 Lupinus albus HOM05D002718 ORTHO05D003269 7.9e-74 281.2 207 65.2
THA.LOC104802597 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 7.9e-74 281.2 203 65.5
MSTRG.10465 Avicennia marina HOM05D002718 ORTHO05D003269 1.4e-73 280.4 203 64.0
MSTRG.11818 Avicennia marina HOM05D002718 ORTHO05D003269 1.4e-73 280.4 200 66.5
AUR62038736 Chenopodium quinoa HOM05D002718 ORTHO05D003269 1.4e-73 280.4 199 63.8
Cc11_g03230 Coffea canephora HOM05D002718 ORTHO05D003269 1.4e-73 280.4 202 65.3
Sopen08g022860 Solanum pennellii HOM05D002718 ORTHO05D003269 1.8e-73 280.0 203 65.5
CSS0012006 Camellia sinensis var. sinensis HOM05D002718 ORTHO05D003269 2.3e-73 279.6 203 64.5
AUR62020642 Chenopodium quinoa HOM05D002718 ORTHO05D003269 2.3e-73 279.6 200 63.5
HPP92_017382 Vanilla planifolia HOM05D002718 ORTHO05D003269 2.3e-73 279.6 204 64.7
Manes.03G001300 Manihot esculenta HOM05D002718 ORTHO05D003269 3.0e-73 279.3 200 65.5
Cpa.g.sc148.1 Carica papaya HOM05D002718 ORTHO05D003269 3.9e-73 278.9 199 67.3
MD15G1103100 Malus domestica HOM05D002718 ORTHO05D003269 3.9e-73 278.9 205 63.4
Solyc07g016170.4 Solanum lycopersicum HOM05D002718 ORTHO05D003269 3.9e-73 278.9 197 67.5
FvH4_2g36460 Fragaria vesca HOM05D002718 ORTHO05D003269 5.2e-73 278.5 201 65.2
ATR0626G149 Amborella trichopoda HOM05D002718 ORTHO05D003269 6.7e-73 278.1 198 64.1
Medtr1g009190 Medicago truncatula HOM05D002718 ORTHO05D003269 6.7e-73 278.1 203 64.5
SalBow5G2825 Salvia bowleyana HOM05D002718 ORTHO05D003269 6.7e-73 278.1 198 64.1
SalBow5G3535 Salvia bowleyana HOM05D002718 ORTHO05D003269 6.7e-73 278.1 198 64.1
CAN.G600.5 Capsicum annuum HOM05D002718 ORTHO05D003269 8.8e-73 277.7 197 67.0
SalBow4G0158 Salvia bowleyana HOM05D002718 ORTHO05D003269 8.8e-73 277.7 199 64.3
Lj7C754T6 Lonicera japonica HOM05D002718 ORTHO05D003269 1.5e-72 276.9 199 63.8
Oeu028830.2 Olea europaea HOM05D002718 ORTHO05D003269 1.5e-72 276.9 210 64.3
MSTRG.25768 Avicennia marina HOM05D002718 ORTHO05D003269 2.6e-72 276.2 203 65.5
Os02g0141300 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 3.3e-72 275.8 201 63.7
Sabra18G0006600 Salix brachista HOM05D002718 ORTHO05D003269 3.3e-72 275.8 233 59.2
Haze_21795 Corylus avellana HOM05D002718 ORTHO05D003269 4.4e-72 275.4 245 57.6
Lalb_Chr22g0361171 Lupinus albus HOM05D002718 ORTHO05D003269 4.4e-72 275.4 202 64.4
Dinv38809 Davidia involucrata HOM05D002718 ORTHO05D003269 7.4e-72 274.6 204 63.7
Glyma.14G138300 Glycine max HOM05D002718 ORTHO05D003269 1.3e-71 273.9 203 63.5
Glyma.17G194400 Glycine max HOM05D002718 ORTHO05D003269 1.3e-71 273.9 203 64.0
Phvul.001G077700 Phaseolus vulgaris HOM05D002718 ORTHO05D003269 1.3e-71 273.9 201 64.7
Hund03264 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.2e-71 273.1 204 63.2
Nn5g27632 Nelumbo nucifera HOM05D002718 ORTHO05D003269 4.8e-71 271.9 203 63.1
DCAR_000671 Daucus carota HOM05D002718 ORTHO05D003269 6.3e-71 271.6 202 63.9
FAN27G0986 Fragaria x ananassa HOM05D002718 ORTHO05D003269 1.4e-70 270.4 205 63.4
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 1.8e-70 270.0 217 60.8
Sabra18G0009800 Salix brachista HOM05D002718 ORTHO05D003269 2.4e-70 269.6 249 55.4
Os06g0702500 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 9.1e-70 267.7 204 59.8
Zm00001eb227090 Zea mays HOM05D002718 ORTHO05D003269 2.0e-69 266.5 198 61.1
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 3.5e-69 265.8 192 63.5
PSO675G1851 Papaver somniferum HOM05D002718 ORTHO05D003269 1.1e-67 260.8 217 61.8
SEGI_37495 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 1.2e-66 257.3 201 60.7
Lsat_1_v5_gn_5_56521 Lactuca sativa HOM05D002718 ORTHO05D003269 4.7e-66 255.4 204 57.4
SEGI_21242 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 1.3e-63 247.3 202 57.4
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 1.6e-58 230.3 174 61.5
AagrBONN_evm.TU.Sc2ySwM_117.407 Anthoceros agrestis HOM05D002718 ORTHO05D003269 2.1e-58 229.9 195 54.4
arahy.Tifrunner.gnm1.ann1.NA6C8E Arachis hypogaea HOM05D002718 ORTHO05D003269 5.2e-57 225.3 198 56.6
arahy.Tifrunner.gnm1.ann1.YWBJ1A Arachis hypogaea HOM05D002718 ORTHO05D003269 5.2e-57 225.3 198 56.6
Mapoly0043s0024 Marchantia polymorpha HOM05D002718 ORTHO05D003269 3.4e-56 222.6 207 53.6
CBR_g29486 Chara braunii HOM05D002718 ORTHO05D003269 1.7e-55 220.3 197 53.3
SMO146G0086 Selaginella moellendorffii HOM05D002718 ORTHO05D003269 1.4e-54 217.2 204 52.0
CARHR153810 Cardamine hirsuta HOM05D002718 ORTHO05D003269 2.4e-54 216.5 129 86.0
Pp3c16_4920 Physcomitrium patens HOM05D002718 ORTHO05D003269 2.4e-54 216.5 195 54.4
Pp3c6_8620 Physcomitrium patens HOM05D002718 ORTHO05D003269 1.6e-53 213.8 196 52.6
Migut.A00453 Erythranthe guttata HOM05D002718 ORTHO05D003269 4.5e-53 212.2 194 56.7
Potri.018G138202 Populus trichocarpa HOM05D002718 ORTHO05D003269 1.3e-52 210.7 178 60.1
unitig_32.g11648 Utricularia gibba HOM05D002718 ORTHO05D003269 1.2e-50 204.1 176 56.8
PRCOL_00002758 Prasinoderma coloniale HOM05D002718 ORTHO05D003269 7.8e-45 184.9 186 51.1
QL12p025856 Quercus lobata HOM05D002718 ORTHO05D003269 1.2e-42 177.6 123 68.3
ClCG05G026320 Citrullus lanatus HOM05D002718 ORTHO05D003269 1.5e-40 170.6 201 43.3
Cre03.g185300 Chlamydomonas reinhardtii HOM05D002718 ORTHO05D003269 1.8e-33 147.1 191 41.4
A08p12450 Brassica napus HOM05D002718 ORTHO05D021965 9.8e-32 141.4 130 53.8
BraA08t33211Z Brassica rapa HOM05D002718 ORTHO05D021965 9.8e-32 141.4 130 53.8
Zm00001eb208110 Zea mays HOM05D002718 ORTHO05D003269 1.9e-30 137.1 98 58.2
BcaB04g18358 Brassica carinata HOM05D002718 ORTHO05D003269 5.4e-30 135.6 100 59.0
MCO10G390 Micromonas commoda HOM05D002718 ORTHO05D003269 1.4e-25 120.9 171 39.8
PGSC0003DMG401029558 Solanum tuberosum HOM05D002718 ORTHO05D003269 3.1e-25 119.8 81 71.6
BraA07t28757Z Brassica rapa HOM05D002718 ORTHO05D003269 3.5e-21 106.3 55 90.9
BcaB04g18359 Brassica carinata HOM05D002718 ORTHO05D003269 4.6e-21 105.9 71 71.8
PSO675G2070 Papaver somniferum HOM05D002718 ORTHO05D021965 6.6e-12 75.5 65 55.4
BolC8t48332H Brassica oleracea HOM05D002718 ORTHO05D021965 8.1e-10 68.6 44 75.0
BcaC07g37950 Brassica carinata HOM05D049696 ORTHO05D021965 5.2e-09 65.9 43 72.1
arahy.Tifrunner.gnm1.ann1.JKU0Z0 Arachis hypogaea HOM05D000572 ORTHO05D083655 1.2e-08 64.7 52 65.4
BolC8t48331H Brassica oleracea HOM05D002718 ORTHO05D003269 8.4e-07 58.5 93 38.7
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 1.9e-06 57.4 46 63.0
arahy.Tifrunner.gnm1.ann1.UGM12E Arachis hypogaea HOM05D003313 ORTHO05D004217 4.2e-06 56.2 40 70.0
PSO541G1201 Papaver somniferum HOM05D000079 ORTHO05D000508 7.1e-06 55.5 108 34.3


User provided reference genes

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