Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.3e-183 645.6 363 100.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.3e-129 465.7 339 81.7
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 5.8e-118 428.3 325 79.7
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.7e-115 419.5 325 80.0
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.1e-105 387.5 243 93.4
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 2.2e-93 346.7 216 94.4
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 6.2e-80 302.0 361 59.0
A03p64860 Brassica napus HOM05D004147 ORTHO05D018802 1.3e-69 267.7 184 78.8
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 3.6e-67 259.6 178 91.6
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.1e-65 254.6 178 89.9
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.7e-64 249.6 321 57.3
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.2e-59 234.6 317 55.5
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 7.2e-52 208.8 138 97.8
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 4.8e-48 196.1 138 92.8
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.1e-39 168.3 118 76.3
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.8e-39 167.5 119 75.6
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.8e-39 167.5 119 75.6
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 2.4e-39 167.2 119 74.8
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 2.7e-38 163.7 118 76.3
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 5.9e-38 162.5 118 74.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.9e-37 160.2 119 73.9
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.2e-36 156.8 118 73.7
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.2e-35 154.8 118 71.2
BraA07t28876Z Brassica rapa HOM05D004147 ORTHO05D018802 2.7e-35 153.7 135 67.4
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.8e-32 143.7 118 70.3
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-31 141.7 115 70.4
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-31 141.7 115 70.4
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 9.1e-31 138.7 118 65.3
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 9.1e-31 138.7 125 61.6
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.7e-30 137.1 118 64.4
A07p10860 Brassica napus HOM05D004147 ORTHO05D018802 4.5e-30 136.3 113 69.0
A07p10870 Brassica napus HOM05D004147 ORTHO05D018802 4.5e-30 136.3 113 69.0
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.7e-30 135.6 115 63.5
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.0e-29 135.2 118 63.6
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.3e-29 134.8 118 63.6
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.3e-29 134.8 115 61.7
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.7e-29 134.4 117 65.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.7e-29 134.4 118 63.6
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.7e-29 134.4 118 63.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.3e-29 134.0 118 64.4
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 2.3e-29 134.0 118 63.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 2.9e-29 133.7 118 62.7
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 3.8e-29 133.3 118 62.7
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.8e-29 133.3 118 65.3
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 5.0e-29 132.9 115 60.9
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 5.0e-29 132.9 118 61.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 5.0e-29 132.9 118 61.9
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 6.6e-29 132.5 118 62.7
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 6.6e-29 132.5 118 62.7
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 8.6e-29 132.1 118 61.9
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-28 131.7 116 61.2
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-28 131.7 116 61.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.1e-28 131.7 117 63.2
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.1e-28 131.7 119 63.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.5e-28 131.3 118 61.9
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.5e-28 131.3 118 62.7
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.5e-28 131.3 117 62.4
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.9e-28 131.0 106 70.8
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.9e-28 131.0 112 64.3
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.5e-28 130.6 118 61.9
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.5e-28 130.6 119 61.3
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 2.5e-28 130.6 119 63.0
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.3e-28 130.2 115 62.6
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.2e-28 129.8 119 63.0
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 5.5e-28 129.4 117 60.7
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 5.5e-28 129.4 118 61.9
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.2e-28 129.0 119 63.0
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.2e-28 129.0 119 63.0
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.2e-28 129.0 119 64.7
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 7.2e-28 129.0 117 63.2
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 7.2e-28 129.0 118 61.9
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 9.5e-28 128.6 120 60.8
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 1.2e-27 128.3 119 63.0
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.2e-27 128.3 119 63.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.2e-27 128.3 119 63.0
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.2e-27 128.3 118 60.2
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.6e-27 127.9 118 60.2
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.6e-27 127.9 118 61.0
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.6e-27 127.9 118 61.0
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.6e-27 127.9 118 62.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 2.1e-27 127.5 115 62.6
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.1e-27 127.5 118 61.9
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.1e-27 127.5 118 59.3
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.1e-27 127.5 119 62.2
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.8e-27 127.1 118 62.7
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.8e-27 127.1 118 62.7
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.6e-27 126.7 118 61.0
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.6e-27 126.7 118 62.7
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.6e-27 126.7 117 62.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.6e-27 126.7 119 63.9
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 4.7e-27 126.3 118 60.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 4.7e-27 126.3 118 61.0
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 6.1e-27 125.9 118 59.3
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 6.1e-27 125.9 120 59.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 6.1e-27 125.9 119 59.7
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.1e-27 125.9 118 60.2
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 8.0e-27 125.6 118 60.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.0e-27 125.6 118 61.0
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 8.0e-27 125.6 120 57.5
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.0e-27 125.6 118 60.2
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.0e-27 125.6 118 60.2
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.4e-26 124.8 120 58.3
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.4e-26 124.8 119 61.3
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.8e-26 124.4 118 59.3
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.8e-26 124.4 118 61.0
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.3e-26 124.0 118 61.0
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 3.0e-26 123.6 119 61.3
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.0e-26 123.2 118 61.0
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.9e-26 122.1 117 60.7
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.2e-25 121.7 118 59.3
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.5e-25 121.3 118 59.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.0e-25 120.9 119 58.8
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.0e-25 120.9 118 60.2
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.6e-25 120.6 118 58.5
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 2.6e-25 120.6 119 57.1
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 3.4e-25 120.2 119 58.8
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 3.4e-25 120.2 118 56.8
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.4e-25 119.8 118 55.9
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.7e-25 119.4 118 58.5
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 9.8e-25 118.6 118 55.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 9.8e-25 118.6 119 57.1
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 2.2e-24 117.5 105 60.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 3.7e-24 116.7 120 59.2
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 4.9e-24 116.3 114 56.1
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-23 114.8 115 56.5
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-23 114.8 118 55.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 2.4e-23 114.0 117 57.3
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.0e-22 110.9 122 54.9
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.7e-22 110.5 122 54.9
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 3.5e-22 110.2 122 56.6
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.5e-22 109.8 120 55.0
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 5.9e-22 109.4 122 54.1
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.3e-21 108.2 118 54.2
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.7e-21 107.8 96 64.6
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.9e-21 106.7 116 50.0
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 6.6e-21 105.9 114 50.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.6e-21 105.5 116 50.0
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.5e-20 104.0 127 52.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 1.2e-19 101.7 127 52.8
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.7e-19 99.8 116 46.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 8.9e-18 95.5 183 41.0
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.9e-16 90.5 112 47.3
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 4.9e-16 89.7 126 43.7
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.4e-16 89.4 83 60.2
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 6.4e-16 89.4 83 60.2
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.7e-13 81.3 128 37.5
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 6.6e-13 79.3 124 36.3
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-11 75.1 65 63.1
BolC7t45455H Brassica oleracea HOM05D000313 ORTHO05D000065 1.4e-10 71.6 116 44.8
A09p35480 Brassica napus HOM05D000305 ORTHO05D000065 1.8e-10 71.2 112 43.8
A10p33690 Brassica napus HOM05D000313 ORTHO05D000065 3.1e-10 70.5 102 45.1
BolC6t37050H Brassica oleracea HOM05D000313 ORTHO05D000065 4.0e-10 70.1 102 45.1
BolC3t15032H Brassica oleracea HOM05D000305 ORTHO05D000065 5.2e-10 69.7 102 45.1
C01p21550 Brassica napus HOM05D000313 ORTHO05D000065 8.9e-10 68.9 105 46.7
BolC1t02075H Brassica oleracea HOM05D000313 ORTHO05D000065 8.9e-10 68.9 105 46.7
BolC2t08209H Brassica oleracea HOM05D000313 ORTHO05D000065 2.6e-09 67.4 102 44.1
BolC6t36657H Brassica oleracea HOM05D000305 ORTHO05D000065 2.6e-09 67.4 106 43.4
BraA05t19977Z Brassica rapa HOM05D000313 ORTHO05D000065 2.6e-09 67.4 106 43.4
C02p20670 Brassica napus HOM05D000313 ORTHO05D000065 3.4e-09 67.0 102 44.1
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 3.4e-09 67.0 139 36.0
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.4e-09 67.0 63 58.7
C03p67840 Brassica napus HOM05D000313 ORTHO05D000065 7.5e-09 65.9 103 43.7
BolSC21t60252H Brassica oleracea HOM05D000313 ORTHO05D000065 7.5e-09 65.9 103 43.7
A09p30460 Brassica napus HOM05D000305 ORTHO05D000065 4.9e-08 63.2 100 43.0
BraA09t38616Z Brassica rapa HOM05D000305 ORTHO05D000065 4.9e-08 63.2 100 43.0
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 4.9e-08 63.2 44 72.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 6.4e-08 62.8 31 90.3
BcaB01g04686 Brassica carinata HOM05D000313 ORTHO05D000065 1.1e-07 62.0 104 42.3
C08p01640 Brassica napus HOM05D000313 ORTHO05D000065 3.2e-07 60.5 103 43.7
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.2e-07 60.5 115 33.9
BcaB05g24149 Brassica carinata HOM05D000313 ORTHO05D000065 7.0e-07 59.3 100 41.0
C05p00200 Brassica napus HOM05D000313 ORTHO05D000065 9.2e-07 58.9 102 42.2
C06p47470 Brassica napus HOM05D000313 ORTHO05D000065 9.2e-07 58.9 102 42.2
C07p05180 Brassica napus HOM05D000313 ORTHO05D000065 9.2e-07 58.9 102 42.2
BraA08t32937Z Brassica rapa HOM05D000313 ORTHO05D000065 9.2e-07 58.9 102 42.2
BolC6t37005H Brassica oleracea HOM05D000313 ORTHO05D000065 1.6e-06 58.2 100 42.0
C06p26830 Brassica napus HOM05D000313 ORTHO05D000065 2.1e-06 57.8 52 59.6
BolC6t37857H Brassica oleracea HOM05D000313 ORTHO05D013032 2.1e-06 57.8 52 59.6
BcaB05g24563 Brassica carinata HOM05D000313 ORTHO05D013032 4.6e-06 56.6 111 37.8
BcaB07g33009 Brassica carinata HOM05D000313 ORTHO05D000065 4.6e-06 56.6 105 39.0
BcaC08g43795 Brassica carinata HOM05D000313 ORTHO05D021935 4.6e-06 56.6 155 33.5


User provided reference genes

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