Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p24490 Brassica napus HOM05D000565 ORTHO05D031539 5.4e-23 110.2 56 100.0
BolC8t50067H Brassica oleracea HOM05D000565 ORTHO05D031539 1.6e-22 108.6 56 98.2
BcaC07g39409 Brassica carinata HOM05D000565 ORTHO05D016761 1.1e-12 75.9 114 46.5
BcaC03g18426 Brassica carinata HOM05D000565 ORTHO05D004389 3.6e-11 70.9 41 85.4
Thhalv10004465m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 3.6e-11 70.9 41 85.4
Sp2g30500 Schrenkiella parvula HOM05D000565 ORTHO05D004389 3.6e-11 70.9 41 85.4
Aa31LG1G14700 Aethionema arabicum HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
AT5G66190 Arabidopsis thaliana HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
BcaB07g29673 Brassica carinata HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
BcaC04g23117 Brassica carinata HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
BolC9t54088H Brassica oleracea HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
BraA09t36656Z Brassica rapa HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
Carub.0008s2831 Capsella rubella HOM05D000565 ORTHO05D004389 8.0e-11 69.7 41 82.9
CARHR281540 Cardamine hirsuta HOM05D000565 ORTHO05D004389 1.8e-10 68.6 41 80.5
Migut.H02168 Erythranthe guttata HOM05D000565 ORTHO05D004389 1.8e-10 68.6 50 68.0
C08p18860 Brassica napus HOM05D000565 ORTHO05D024594 2.3e-10 68.2 41 80.5
MSTRG.2719 Avicennia marina HOM05D000565 ORTHO05D004389 3.1e-10 67.8 50 68.0
Eucgr.I02340 Eucalyptus grandis HOM05D000565 ORTHO05D004389 3.1e-10 67.8 50 66.0
FvH4_1g11730 Fragaria vesca HOM05D000565 ORTHO05D004389 5.2e-10 67.0 50 66.0
FAN19G2613 Fragaria x ananassa HOM05D000565 ORTHO05D004389 5.2e-10 67.0 50 66.0
FAN26G2246 Fragaria x ananassa HOM05D000565 ORTHO05D004389 5.2e-10 67.0 50 66.0
FAN28G1049 Fragaria x ananassa HOM05D000565 ORTHO05D004389 5.2e-10 67.0 50 66.0
MD02G1130800 Malus domestica HOM05D000565 ORTHO05D004389 5.2e-10 67.0 50 64.0
Rhsim10G0211400 Rhododendron simsii HOM05D000565 ORTHO05D004389 5.2e-10 67.0 50 66.0
Actinidia28706 Actinidia chinensis HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 66.0
MSTRG.23404 Avicennia marina HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 68.0
FAN23G1021 Fragaria x ananassa HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 66.0
Oeu028604.1 Olea europaea HOM05D000565 ORTHO05D004389 6.8e-10 66.6 41 75.6
Os02g0103800 Oryza sativa ssp. japonica HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 66.0
PGR083G0424 Punica granatum HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 64.0
RcHm_v2.0_Chr2g0099331 Rosa chinensis HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 64.0
Hund16494 Selenicereus undatus HOM05D000565 ORTHO05D004389 6.8e-10 66.6 54 63.0
TPR.G14414 Trifolium pratense HOM05D000565 ORTHO05D004389 6.8e-10 66.6 41 75.6
unitig_699.g19707 Utricularia gibba HOM05D000565 ORTHO05D004389 6.8e-10 66.6 50 64.0
BcaB03g14341 Brassica carinata HOM05D000565 ORTHO05D004389 8.9e-10 66.2 41 75.6
BcaB03g14410 Brassica carinata HOM05D000565 ORTHO05D004389 8.9e-10 66.2 41 75.6
BcaB03g14415 Brassica carinata HOM05D000565 ORTHO05D004389 8.9e-10 66.2 41 75.6
Cpa.g.sc6.260 Carica papaya HOM05D000565 ORTHO05D004389 8.9e-10 66.2 50 64.0
Cfa006979 Carpinus fangiana HOM05D000565 ORTHO05D004389 8.9e-10 66.2 41 75.6
QL02p011783 Quercus lobata HOM05D000565 ORTHO05D004389 8.9e-10 66.2 49 63.3
Sed0027169 Sechium edule HOM05D000565 ORTHO05D004389 8.9e-10 66.2 41 75.6
SGA_v2.0_scaffold78G25377 Striga asiatica HOM05D000565 ORTHO05D004389 8.9e-10 66.2 41 75.6
ATR0582G335 Amborella trichopoda HOM05D000565 ORTHO05D004389 1.2e-09 65.9 41 75.6
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 1.2e-09 65.9 41 78.0
MBI05_g05280_MAGBIO Magnolia biondii HOM05D000565 ORTHO05D004389 1.2e-09 65.9 50 66.0
MD15G1244500 Malus domestica HOM05D000565 ORTHO05D004389 1.2e-09 65.9 50 62.0
Potri.005G112900 Populus trichocarpa HOM05D000565 ORTHO05D004389 1.2e-09 65.9 50 64.0
SalBow3G3951 Salvia bowleyana HOM05D000565 ORTHO05D004389 1.2e-09 65.9 50 64.0
vmacro22138 Vaccinium macrocarpon HOM05D000565 ORTHO05D004389 1.2e-09 65.9 50 64.0
GSVIVG01018772001 Vitis vinifera HOM05D000565 ORTHO05D004389 1.2e-09 65.9 50 62.0
CDE04G1986 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 1.5e-09 65.5 50 62.0
Ca_25819_v3 Cicer arietinum L. HOM05D000565 ORTHO05D002009 1.5e-09 65.5 41 73.2
Glyma.11G077600 Glycine max HOM05D000565 ORTHO05D004389 1.5e-09 65.5 41 73.2
Glyma.16G127300 Glycine max HOM05D000565 ORTHO05D004389 1.5e-09 65.5 41 75.6
Sc16g0002300 Simmondsia chinensis HOM05D000565 ORTHO05D004389 1.5e-09 65.5 41 75.6
THA.LOC104811414 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 1.5e-09 65.5 50 62.0
ClCG10G000720 Citrullus lanatus HOM05D000565 ORTHO05D004389 2.0e-09 65.1 41 73.2
Haze_03756 Corylus avellana HOM05D000565 ORTHO05D004389 2.0e-09 65.1 41 73.2
SalBow3G0828 Salvia bowleyana HOM05D000565 ORTHO05D004389 2.0e-09 65.1 41 73.2
THA.LOC104821330 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 2.0e-09 65.1 41 73.2
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 2.6e-09 64.7 41 73.2
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 2.6e-09 64.7 41 73.2
Manes.02G105100 Manihot esculenta HOM05D000565 ORTHO05D004389 2.6e-09 64.7 50 62.0
Manes.18G012800 Manihot esculenta HOM05D000565 ORTHO05D004389 2.6e-09 64.7 41 73.2
Prupe.7G169200 Prunus persica HOM05D000565 ORTHO05D004389 2.6e-09 64.7 50 62.0
Sp1g17790 Schrenkiella parvula HOM05D000565 ORTHO05D004389 2.6e-09 64.7 41 73.2
GSVIVG01009925001 Vitis vinifera HOM05D000565 ORTHO05D004389 2.6e-09 64.7 50 62.0
Actinidia17438 Actinidia chinensis HOM05D000565 ORTHO05D004389 3.4e-09 64.3 50 62.0
Actinidia22970 Actinidia chinensis HOM05D000565 ORTHO05D004389 3.4e-09 64.3 50 62.0
arahy.Tifrunner.gnm1.ann1.AR01JJ Arachis hypogaea HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 70.7
arahy.Tifrunner.gnm1.ann1.ZQ3F6U Arachis hypogaea HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 70.7
CSS0021906 Camellia sinensis var. sinensis HOM05D000565 ORTHO05D004389 3.4e-09 64.3 50 62.0
Ciclev10027108m.g Citrus clementina HOM05D000565 ORTHO05D004389 3.4e-09 64.3 50 62.0
Glyma.02G047600 Glycine max HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 73.2
Gohir.A12G059200 Gossypium hirsutum HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 73.2
Gohir.D12G059600 Gossypium hirsutum HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 73.2
Gorai.008G062600 Gossypium raimondii HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 73.2
Lj4g0026452 Lotus japonicus HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 70.7
Phvul.002G108000 Phaseolus vulgaris HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 70.7
Thecc.01G017500 Theobroma cacao HOM05D000565 ORTHO05D004389 3.4e-09 64.3 50 62.0
vmacro18411 Vaccinium macrocarpon HOM05D000565 ORTHO05D004389 3.4e-09 64.3 50 62.0
VMungo0251G2150 Vigna mungo HOM05D000565 ORTHO05D004389 3.4e-09 64.3 41 70.7
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 4.4e-09 63.9 48 62.5
CsaV3_3G000770 Cucumis sativus L. HOM05D000565 ORTHO05D004389 4.4e-09 63.9 41 73.2
Os06g0107700 Oryza sativa ssp. japonica HOM05D000565 ORTHO05D004389 4.4e-09 63.9 41 73.2
PSO541G2303 Papaver somniferum HOM05D000565 ORTHO05D004389 4.4e-09 63.9 41 73.2
PSO675G9089 Papaver somniferum HOM05D000565 ORTHO05D004389 4.4e-09 63.9 41 73.2
QL06p033047 Quercus lobata HOM05D000565 ORTHO05D004389 4.4e-09 63.9 40 72.5
VMungo1215G0819 Vigna mungo HOM05D000565 ORTHO05D004389 4.4e-09 63.9 41 70.7
Zm00001eb140530 Zea mays HOM05D000565 ORTHO05D004389 4.4e-09 63.9 50 62.0
Zm00001eb362640 Zea mays HOM05D000565 ORTHO05D004389 4.4e-09 63.9 50 60.0
Cc07_g10820 Coffea canephora HOM05D000565 ORTHO05D004389 5.8e-09 63.5 41 75.6
Duzib187G1458 Durio zibethinus HOM05D000565 ORTHO05D004389 5.8e-09 63.5 50 62.0
Hma1.2p1_0315F.1_g122190 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 5.8e-09 63.5 50 62.0
Hma1.2p1_0956F.1_g241235 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 5.8e-09 63.5 50 62.0
Medtr5g022300 Medicago truncatula HOM05D000565 ORTHO05D004389 5.8e-09 63.5 41 70.7
arahy.Tifrunner.gnm1.ann1.5F6K96 Arachis hypogaea HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 70.7
arahy.Tifrunner.gnm1.ann1.61CDGC Arachis hypogaea HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 70.7
arahy.Tifrunner.gnm1.ann1.PWL9EC Arachis hypogaea HOM05D002390 ORTHO05D031539 7.5e-09 63.2 41 70.7
CSS0038460 Camellia sinensis var. sinensis HOM05D000565 ORTHO05D004389 7.5e-09 63.2 50 62.0
CiPaw.07G059500 Carya illinoinensis HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 70.7
Dinv40093 Davidia involucrata HOM05D000565 ORTHO05D004389 7.5e-09 63.2 50 64.0
Gohir.A05G186100 Gossypium hirsutum HOM05D000565 ORTHO05D004389 7.5e-09 63.2 50 60.0
Gohir.D05G189000 Gossypium hirsutum HOM05D000565 ORTHO05D004389 7.5e-09 63.2 50 60.0
Gorai.009G194200 Gossypium raimondii HOM05D000565 ORTHO05D004389 7.5e-09 63.2 50 60.0
Lalb_Chr05g0212361 Lupinus albus HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 70.7
Lalb_Chr16g0377491 Lupinus albus HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 70.7
Manes.01G146600 Manihot esculenta HOM05D000565 ORTHO05D004389 7.5e-09 63.2 50 60.0
Sabra05G0092700 Salix brachista HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 70.7
Hund14049 Selenicereus undatus HOM05D000565 ORTHO05D004389 7.5e-09 63.2 41 73.2
AL1G32800 Arabidopsis lyrata HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
AT1G20020 Arabidopsis thaliana HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BcaB03g12883 Brassica carinata HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BcaB03g14347 Brassica carinata HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BcaC07g39016 Brassica carinata HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
A07p16060 Brassica napus HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
A08p29530 Brassica napus HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
C07p23430 Brassica napus HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
C08p19890 Brassica napus HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BolC7t42876H Brassica oleracea HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BolC8t49627H Brassica oleracea HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BraA07t29334Z Brassica rapa HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
BraA08t34890Z Brassica rapa HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
CSS0004337 Camellia sinensis var. sinensis HOM05D000565 ORTHO05D004389 9.8e-09 62.8 50 62.0
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 70.7
MELO3C013765.2 Cucumis melo HOM05D000565 ORTHO05D004389 9.8e-09 62.8 41 75.6
Gohir.A11G174700 Gossypium hirsutum HOM05D000565 ORTHO05D004389 9.8e-09 62.8 39 76.9
Gohir.D11G182100 Gossypium hirsutum HOM05D000565 ORTHO05D004389 9.8e-09 62.8 39 76.9
Gorai.007G193800 Gossypium raimondii HOM05D000565 ORTHO05D004389 9.8e-09 62.8 39 76.9
Lj2A470G26 Lonicera japonica HOM05D000565 ORTHO05D004389 9.8e-09 62.8 50 62.0
SEGI_24088 Sequoiadendron giganteum HOM05D000565 ORTHO05D004389 9.8e-09 62.8 50 60.0
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 9.8e-09 62.8 50 60.0
Atru.chr3.811 Acer truncatum HOM05D000565 ORTHO05D004389 1.3e-08 62.4 41 68.3
Dinv33639 Davidia involucrata HOM05D000565 ORTHO05D004389 1.3e-08 62.4 41 73.2
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 1.3e-08 62.4 41 70.7
Rhsim08G0033400 Rhododendron simsii HOM05D000565 ORTHO05D004389 1.3e-08 62.4 50 60.0
TAR376G0248 Trochodendron aralioides HOM05D000565 ORTHO05D004389 1.3e-08 62.4 50 62.0
COL.COLO4_21898 Corchorus olitorius HOM05D000565 ORTHO05D004389 1.7e-08 62.0 41 70.7
Duzib147G1441 Durio zibethinus HOM05D000565 ORTHO05D004389 1.7e-08 62.0 50 62.0
SMO223G0032 Selaginella moellendorffii HOM05D000565 ORTHO05D004389 1.7e-08 62.0 49 61.2
arahy.Tifrunner.gnm1.ann1.F88BV0 Arachis hypogaea HOM05D000600 ORTHO05D000432 2.2e-08 61.6 50 62.0
CANSAT25G1303 Cannabis sativa HOM05D000565 ORTHO05D004389 2.9e-08 61.2 41 70.7
DCAR_016600 Daucus carota HOM05D000565 ORTHO05D004389 2.9e-08 61.2 50 60.0
Oeu020647.1 Olea europaea HOM05D000565 ORTHO05D004389 3.7e-08 60.8 50 58.0
AUR62003362 Chenopodium quinoa HOM05D000565 ORTHO05D004389 4.9e-08 60.5 50 58.0
PGR119G0812 Punica granatum HOM05D000565 ORTHO05D004389 4.9e-08 60.5 50 58.0
Sabra07G0049200 Salix brachista HOM05D000565 ORTHO05D004389 4.9e-08 60.5 50 58.0
Ah.02g119270 Amaranthus hybridus HOM05D000565 ORTHO05D004389 6.4e-08 60.1 50 56.0
TAR628G0458 Trochodendron aralioides HOM05D000565 ORTHO05D004389 6.4e-08 60.1 41 68.3
DCAR_026004 Daucus carota HOM05D000565 ORTHO05D004389 8.3e-08 59.7 41 68.3
Hma1.2p1_0258F.1_g104070 Hydrangea macrophylla HOM05D000565 ORTHO05D004389 8.3e-08 59.7 41 68.3
CAN.G1274.11 Capsicum annuum HOM05D000565 ORTHO05D004389 1.1e-07 59.3 41 68.3
Phvul.003G263200 Phaseolus vulgaris HOM05D000565 ORTHO05D004389 1.1e-07 59.3 41 68.3
EL10Ac6g15482 Beta vulgaris HOM05D000565 ORTHO05D004389 1.4e-07 58.9 41 65.9
CBR_g12714 Chara braunii HOM05D000565 ORTHO05D004389 1.4e-07 58.9 39 71.8
DCAR_021505 Daucus carota HOM05D000565 ORTHO05D004389 2.4e-07 58.2 50 56.0
TWI09G0643 Tripterygium wilfordii HOM05D000565 ORTHO05D004389 2.4e-07 58.2 41 65.9
AUR62029472 Chenopodium quinoa HOM05D000565 ORTHO05D004389 3.2e-07 57.8 50 58.0
ECA246G2128 Erigeron canadensis HOM05D000565 ORTHO05D004389 3.2e-07 57.8 41 68.3
HPP92_022641 Vanilla planifolia HOM05D000565 ORTHO05D004389 3.2e-07 57.8 41 68.3
Potri.007G057200 Populus trichocarpa HOM05D000565 ORTHO05D004389 4.1e-07 57.4 50 56.0
Solyc02g062130.4 Solanum lycopersicum HOM05D000565 ORTHO05D004389 7.0e-07 56.6 50 56.0
Lj4C220T3 Lonicera japonica HOM05D000565 ORTHO05D004389 9.2e-07 56.2 50 54.0
Nitab4.5_0000864g0120 Nicotiana tabacum HOM05D000565 ORTHO05D004389 9.2e-07 56.2 41 65.9
Nitab4.5_0010567g0030 Nicotiana tabacum HOM05D000565 ORTHO05D004389 9.2e-07 56.2 41 65.9
Sopen02g013100 Solanum pennellii HOM05D000565 ORTHO05D004389 9.2e-07 56.2 41 63.4
Duzib041G0757 Durio zibethinus HOM05D000565 ORTHO05D004389 1.2e-06 55.8 36 72.2
Solyc02g083810.4 Solanum lycopersicum HOM05D000565 ORTHO05D004389 1.2e-06 55.8 50 58.0
Sopen02g028600 Solanum pennellii HOM05D000565 ORTHO05D004389 1.2e-06 55.8 50 58.0
Lsat_1_v5_gn_3_73300 Lactuca sativa HOM05D000565 ORTHO05D004389 1.6e-06 55.5 41 65.9
AL8G45340 Arabidopsis lyrata HOM05D000565 ORTHO05D004389 2.7e-06 54.7 69 49.3
PGSC0003DMG402003567 Solanum tuberosum HOM05D000565 ORTHO05D004389 2.7e-06 54.7 50 56.0
HanXRQChr15g0485591 Helianthus annuus HOM05D000565 ORTHO05D004389 3.5e-06 54.3 41 63.4
HanXRQChr16g0531381 Helianthus annuus HOM05D000565 ORTHO05D004389 3.5e-06 54.3 41 63.4
Peaxi162Scf00328g00108 Petunia axillaris HOM05D000565 ORTHO05D004389 3.5e-06 54.3 41 63.4


User provided reference genes

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