Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1717.6 878 100.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 0.0e+00 1701.0 878 99.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1688.3 894 97.2
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1609.7 878 93.6
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 0.0e+00 1590.5 945 86.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 0.0e+00 1462.6 905 83.3
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 0.0e+00 1449.5 912 82.2
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 0.0e+00 1396.3 905 80.0
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 0.0e+00 1390.9 888 81.6
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 0.0e+00 1307.0 908 75.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1285.4 883 76.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 0.0e+00 1132.5 930 64.3
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 0.0e+00 1112.1 758 78.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.9e-279 966.1 918 57.1
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.0e-277 958.7 1009 52.8
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.1e-276 956.8 748 64.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 3.3e-276 955.3 963 54.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 6.2e-275 951.0 967 54.1
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 5.8e-273 944.5 948 54.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-269 933.3 981 52.1
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.7e-269 932.9 979 52.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 3.3e-268 928.7 961 54.0
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 9.6e-268 927.2 1020 51.5
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.6e-267 926.4 966 53.7
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 6.2e-267 924.5 975 53.1
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 8.1e-267 924.1 958 53.8
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.1e-266 922.2 932 55.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.5e-265 918.3 747 60.8
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.9e-265 917.1 932 54.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.9e-264 915.6 750 61.9
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 8.4e-264 914.1 760 61.1
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.1e-263 913.7 977 51.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.1e-263 911.0 966 53.3
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 9.6e-260 900.6 953 51.4
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 3.6e-259 898.7 952 51.8
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 4.0e-258 895.2 963 51.2
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 5.8e-257 891.3 933 52.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.3e-256 890.2 926 51.3
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 2.9e-256 889.0 938 51.9
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 6.4e-256 887.9 908 53.5
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.4e-255 886.7 949 51.4
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 4.2e-255 885.2 926 51.9
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.6e-254 883.2 955 49.9
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.6e-254 883.2 960 52.3
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 7.9e-254 880.9 749 58.9
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-253 880.2 979 49.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.1e-252 877.1 932 51.0
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.3e-252 875.5 961 49.8
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.6e-251 873.2 926 52.6
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.1e-250 870.5 979 48.9
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 4.0e-250 868.6 960 49.7
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.6e-249 865.9 965 50.7
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.0e-248 864.0 764 57.3
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.0e-248 864.0 993 48.5
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.9e-247 859.8 817 54.5
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 3.2e-247 859.0 747 58.2
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 7.9e-246 854.4 962 50.9
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 6.7e-245 851.3 715 59.6
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-243 847.0 988 48.5
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 6.9e-242 841.3 947 50.3
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.2e-241 840.5 762 56.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.6e-241 839.3 928 51.3
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.2e-240 836.3 749 56.6
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.5e-239 832.8 915 51.0
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.5e-239 832.8 932 49.4
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.7e-238 829.3 758 55.0
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.1e-238 828.2 758 55.3
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 8.7e-237 824.3 693 59.6
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.3e-236 822.4 986 47.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.4e-234 817.0 992 45.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 5.3e-234 815.1 767 55.3
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 9.1e-234 814.3 749 54.3
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 5.9e-233 811.6 988 47.2
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.1e-230 803.1 953 48.7
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 6.1e-230 801.6 763 53.7
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.2e-225 787.3 781 52.0
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.8e-224 782.3 975 44.3
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.2e-222 777.3 979 47.2
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.6e-222 776.9 943 45.6
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 8.8e-221 771.2 988 45.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 8.5e-216 754.6 759 52.6
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 8.5e-216 754.6 568 73.1
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 8.5e-216 754.6 950 45.1
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 4.0e-213 745.7 711 54.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 7.7e-209 731.5 821 51.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 6.1e-206 721.8 756 50.5
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 8.0e-206 721.5 768 51.6
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 9.8e-204 714.5 941 43.7
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.2e-196 691.0 577 59.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 5.6e-191 672.2 540 62.0
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 4.0e-189 666.0 471 69.6
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.1e-182 643.7 563 57.2
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.9e-178 630.6 786 43.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 3.5e-177 626.3 960 41.2
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 3.3e-175 619.8 802 43.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.2e-174 617.8 490 64.3
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.2e-171 607.1 820 42.1
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 4.6e-169 599.4 752 46.8
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 5.6e-167 592.4 742 47.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-163 580.5 913 39.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.6e-153 547.7 610 48.2
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.8e-153 545.4 724 43.2
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-148 530.4 736 41.8
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-140 502.3 747 40.4
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 9.0e-133 478.8 1002 33.9
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-132 475.7 901 35.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.7e-127 459.5 696 40.4
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-126 457.2 476 49.2
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 8.5e-123 445.7 315 67.6
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 5.1e-120 436.4 453 52.5
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 5.1e-120 436.4 453 52.5
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.2e-118 429.1 616 41.2
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 6.9e-117 426.0 279 73.1
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.3e-110 405.2 370 55.4
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.4e-95 353.6 754 32.4
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.5e-90 338.6 321 56.7
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-80 304.3 617 34.7
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.8e-80 303.1 718 32.7
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 9.8e-79 299.3 457 38.5
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 5.6e-74 283.5 408 39.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 4.0e-72 277.3 482 38.2
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 9.8e-71 272.7 654 31.0
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.4e-69 268.1 441 39.9
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 6.2e-65 253.4 244 50.0
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 6.4e-62 243.4 160 70.0
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.3e-59 235.0 270 46.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 5.1e-51 207.2 140 72.1
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 2.5e-50 204.9 386 37.3
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.3e-50 204.5 733 27.4
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.2e-48 197.2 191 50.8
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.0e-47 195.3 189 56.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.6e-44 185.7 109 78.9
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.6e-41 174.5 160 51.2
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-41 174.1 164 56.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 6.9e-40 170.2 320 34.1
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 8.4e-38 163.3 304 32.9
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-36 158.7 184 47.8
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.0e-35 156.4 111 67.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.7e-35 155.6 191 44.0
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.5e-34 151.8 188 45.2
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.3e-33 149.4 121 62.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-27 129.4 603 26.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.5e-26 125.9 86 66.3
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.5e-26 125.2 93 63.4
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.4e-24 119.4 84 69.0
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 2.2e-22 112.1 77 76.6
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 4.2e-21 107.8 123 48.8
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 2.7e-20 105.1 110 46.4
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.3e-18 98.2 83 63.9
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.4e-16 92.0 84 53.6
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 8.7e-11 73.6 254 31.5
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-06 60.1 71 47.9


User provided reference genes

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