Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1369.0 671 100.0
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 0.0e+00 1330.5 671 96.9
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1130.5 554 99.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 0.0e+00 1120.9 554 98.4
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1103.6 558 96.2
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1092.4 558 95.5
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 0.0e+00 1088.6 558 95.2
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 0.0e+00 1080.5 558 94.8
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 0.0e+00 1076.2 558 93.9
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 4.6e-312 1073.9 558 93.7
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.6e-312 1073.5 558 93.7
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.8e-311 1072.0 558 93.4
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 2.3e-311 1071.6 558 93.9
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 3.5e-310 1067.8 558 93.7
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 4.5e-310 1067.4 558 93.4
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 4.5e-310 1067.4 558 93.4
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.7e-309 1065.4 558 93.2
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.6e-307 1058.9 558 92.1
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 2.0e-297 1025.4 581 89.7
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 2.6e-289 998.4 566 84.8
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 7.0e-287 990.3 596 82.7
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.5e-276 955.3 566 79.7
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.1e-275 952.2 559 81.4
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 2.4e-274 948.7 566 78.8
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 6.8e-274 947.2 565 79.8
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 9.9e-273 943.3 567 79.2
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 9.9e-273 943.3 566 78.6
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 3.8e-272 941.4 566 78.4
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.1e-271 939.9 566 78.3
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 5.4e-271 937.6 569 78.7
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 5.4e-271 937.6 566 79.0
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.2e-270 936.4 566 78.8
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 6.0e-270 934.1 567 77.8
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.5e-268 928.7 566 78.4
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 2.5e-268 928.7 566 77.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.3e-268 928.3 560 78.4
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 4.3e-268 927.9 560 78.9
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 7.3e-268 927.2 569 77.5
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 6.2e-267 924.1 565 77.9
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 6.2e-267 924.1 567 78.1
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 8.1e-267 923.7 613 72.9
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 2.4e-266 922.2 565 77.9
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 2.4e-266 922.2 573 77.5
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 2.4e-266 922.2 572 78.0
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 5.2e-266 921.0 593 75.4
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 6.9e-266 920.6 570 77.4
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 9.0e-266 920.2 565 77.7
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.6e-265 918.7 570 77.5
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 2.6e-265 918.7 562 79.2
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.6e-265 917.1 566 77.2
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 1.7e-264 916.0 565 77.3
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.7e-264 916.0 566 76.1
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 2.2e-264 915.6 567 77.2
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 2.2e-264 915.6 571 77.4
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 2.9e-264 915.2 559 77.8
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 2.9e-264 915.2 572 76.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.9e-264 914.4 566 77.7
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 6.4e-264 914.1 566 76.9
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.1e-263 913.3 566 76.5
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 1.9e-263 912.5 566 75.8
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.2e-263 911.4 566 76.7
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 7.1e-263 910.6 589 75.6
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 4.6e-262 907.9 562 77.8
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 7.8e-262 907.1 616 72.4
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 3.0e-261 905.2 560 77.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 3.3e-260 901.7 574 75.8
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 3.3e-260 901.7 549 78.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 4.3e-260 901.4 566 76.3
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 4.3e-260 901.4 565 76.6
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.4e-258 895.6 572 74.8
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 5.3e-258 894.4 566 75.8
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 9.0e-258 893.6 622 69.8
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-257 893.3 566 76.0
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 2.0e-257 892.5 572 74.5
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 3.4e-257 891.7 561 76.5
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 5.8e-257 891.0 573 74.9
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.7e-256 889.4 572 74.1
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.4e-255 886.3 603 71.5
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.4e-255 886.3 603 71.5
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.9e-255 885.9 566 75.1
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.2e-254 883.2 571 73.4
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 3.3e-252 875.2 569 73.8
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 7.4e-252 874.0 595 71.1
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 7.4e-252 874.0 593 72.2
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.8e-250 869.4 574 72.0
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 2.4e-250 869.0 605 69.9
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 4.0e-250 868.2 576 72.2
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.2e-249 866.7 565 73.5
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 9.9e-249 863.6 590 71.5
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.4e-247 859.0 530 76.8
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.0e-246 854.4 580 72.2
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.9e-246 854.0 618 67.6
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 2.3e-245 852.4 594 70.5
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.9e-244 849.4 566 72.6
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 3.3e-244 848.6 582 69.8
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 9.6e-244 847.0 570 72.3
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.7e-240 836.3 511 79.8
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.7e-240 836.3 575 70.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.6e-238 829.7 581 68.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.1e-238 829.3 575 72.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.9e-236 822.8 584 68.3
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 4.1e-234 815.1 584 66.6
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.2e-232 809.3 580 69.3
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 8.5e-232 807.4 566 70.1
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 1.4e-231 806.6 505 77.2
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.2e-231 805.1 558 70.4
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.1e-230 802.7 484 78.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.0e-229 800.4 565 68.0
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.8e-229 799.7 500 76.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 6.7e-229 797.7 642 63.9
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 5.7e-228 794.7 588 66.5
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.7e-227 792.0 584 65.6
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.8e-226 789.6 581 66.1
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 2.6e-225 785.8 554 69.7
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 6.7e-221 771.2 574 66.0
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.1e-218 763.8 579 64.1
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 4.4e-212 741.9 527 70.8
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 8.2e-203 711.1 562 66.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 7.7e-201 704.5 525 65.3
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.4e-196 689.1 783 50.3
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.2e-188 664.1 509 65.4
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 6.8e-181 638.3 382 84.0
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.4e-180 635.6 569 60.5
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.6e-177 627.1 338 91.4
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.3e-175 619.0 562 56.6
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 8.9e-173 611.3 572 54.9
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.9e-170 603.6 320 91.6
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.0e-168 597.8 388 73.2
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 6.6e-168 595.1 620 50.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.8e-166 589.7 608 51.6
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.2e-165 585.5 561 54.5
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 8.9e-165 584.7 337 82.5
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.7e-145 520.0 568 49.8
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.6e-140 501.9 569 51.1
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.6e-137 492.7 348 73.6
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 9.9e-132 474.9 414 65.5
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.0e-129 465.7 276 79.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.5e-106 389.4 548 41.8
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 2.0e-103 380.9 382 56.0
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-102 378.3 281 66.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 4.0e-80 303.5 481 39.7
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.0e-76 291.2 554 34.5
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.7e-76 290.8 478 37.0
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 5.0e-75 286.6 233 61.8
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 4.0e-72 276.9 572 31.6
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 8.9e-72 275.8 231 58.4
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 5.4e-69 266.5 319 45.1
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.4e-63 246.9 203 58.6
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 8.6e-59 232.6 148 75.7
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 6.8e-56 223.0 253 50.6
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 9.2e-53 212.6 238 54.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 3.0e-43 181.0 139 71.9
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.9e-43 180.6 180 52.8
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.9e-40 169.5 146 63.7
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 7.6e-39 166.4 120 64.2
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.2e-31 142.5 108 67.6
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 2.6e-23 114.8 68 76.5
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 8.4e-22 109.8 61 77.0
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-21 109.4 124 47.6
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 1.2e-20 105.9 59 72.9
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 6.0e-20 103.6 69 69.6
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 9.6e-18 96.3 69 60.9
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 2.1e-17 95.1 128 46.1
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 8.1e-17 93.2 141 38.3
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 2.4e-16 91.7 66 65.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-14 85.9 50 82.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 8.4e-14 83.2 50 76.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 6.0e-12 77.0 52 76.9
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 7.9e-12 76.6 43 79.1
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.8e-11 75.5 40 87.5
Zm00001eb232040 Zea mays HOM05D016932 ORTHO05D019334 1.9e-10 72.0 118 34.7
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 2.5e-10 71.6 40 82.5
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 7.4e-10 70.1 73 47.9
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 1.6e-09 68.9 35 88.6
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.1e-09 68.6 48 60.4
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.4e-08 65.1 36 80.6
Solyc08g067050.3 Solanum lycopersicum HOM05D000639 ORTHO05D005966 8.4e-06 56.6 153 32.0
Sopen08g021000 Solanum pennellii HOM05D000639 ORTHO05D005966 8.4e-06 56.6 153 32.0
PGSC0003DMG400023146 Solanum tuberosum HOM05D000639 ORTHO05D005966 8.4e-06 56.6 153 32.0


User provided reference genes

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