Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p57720 Brassica napus HOM05D003245 ORTHO05D004125 2.6e-69 265.4 145 100.0
BcaNung00534 Brassica carinata HOM05D003245 ORTHO05D004125 2.3e-41 172.6 121 83.5
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 4.5e-29 131.7 244 45.1
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 1.7e-28 129.8 240 46.2
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 1.7e-28 129.8 240 46.2
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 1.7e-28 129.8 240 46.2
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 2.9e-28 129.0 252 44.8
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 2.9e-28 129.0 248 45.2
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 3.8e-28 128.6 255 43.9
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 4.9e-28 128.3 244 48.0
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 1.1e-27 127.1 255 43.5
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 1.4e-27 126.7 240 45.8
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.9e-27 126.3 261 43.3
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 4.2e-27 125.2 250 44.0
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 4.2e-27 125.2 250 44.0
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 4.2e-27 125.2 250 44.0
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 5.5e-27 124.8 252 43.7
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 9.3e-27 124.0 239 44.8
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 2.7e-26 122.5 237 44.7
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 4.6e-26 121.7 246 42.7
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 4.6e-26 121.7 246 42.7
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.0e-25 120.6 249 43.4
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 1.0e-25 120.6 252 42.1
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.3e-25 120.2 242 43.0
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 1.3e-25 120.2 243 42.8
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 2.3e-25 119.4 237 43.0
A03p59700 Brassica napus HOM05D003245 ORTHO05D004125 1.1e-24 117.1 127 59.8
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 1.1e-24 117.1 242 43.0
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 1.5e-24 116.7 244 43.0
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 1.9e-24 116.3 251 41.8
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 2.5e-24 115.9 248 41.9
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 2.5e-24 115.9 248 41.5
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 4.3e-24 115.2 237 43.9
Eucgr.C02287 Eucalyptus grandis HOM05D003245 ORTHO05D004125 4.3e-24 115.2 116 63.8
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 4.3e-24 115.2 254 40.2
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 5.6e-24 114.8 258 42.2
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 5.6e-24 114.8 233 42.1
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 7.4e-24 114.4 117 64.1
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 9.6e-24 114.0 240 43.3
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 9.6e-24 114.0 247 41.3
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 9.6e-24 114.0 117 63.2
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 9.6e-24 114.0 117 63.2
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 9.6e-24 114.0 243 42.4
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 1.3e-23 113.6 116 62.9
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 1.6e-23 113.2 122 61.5
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 1.6e-23 113.2 117 63.2
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 2.1e-23 112.8 117 61.5
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 2.1e-23 112.8 117 62.4
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 2.1e-23 112.8 117 62.4
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 2.1e-23 112.8 117 62.4
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 2.1e-23 112.8 117 61.5
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 2.1e-23 112.8 248 43.5
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 2.1e-23 112.8 117 62.4
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 2.1e-23 112.8 243 40.3
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 2.8e-23 112.5 117 61.5
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 2.8e-23 112.5 249 41.8
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 2.8e-23 112.5 257 40.9
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 3.7e-23 112.1 112 63.4
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 3.7e-23 112.1 245 41.2
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 4.8e-23 111.7 249 41.4
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 4.8e-23 111.7 117 62.4
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 4.8e-23 111.7 117 62.4
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 4.8e-23 111.7 249 41.0
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 4.8e-23 111.7 255 39.6
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 6.2e-23 111.3 117 61.5
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 6.2e-23 111.3 117 61.5
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 6.2e-23 111.3 251 39.8
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 6.2e-23 111.3 254 39.4
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 6.2e-23 111.3 117 60.7
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 62.4
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 63.2
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 61.5
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 60.7
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 61.5
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 60.7
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 8.2e-23 110.9 248 39.9
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 61.5
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 61.5
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 59.8
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 61.5
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 61.5
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 8.2e-23 110.9 117 59.8
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 1.1e-22 110.5 122 59.8
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 1.1e-22 110.5 117 62.4
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 1.4e-22 110.2 241 42.7
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 1.4e-22 110.2 245 41.2
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.4e-22 110.2 245 41.2
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.4e-22 110.2 245 41.2
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.4e-22 110.2 245 41.2
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 1.4e-22 110.2 245 40.8
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 1.4e-22 110.2 112 61.6
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 61.5
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 62.4
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 62.4
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 1.8e-22 109.8 253 39.1
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 62.4
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 62.4
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 62.4
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.8e-22 109.8 117 62.4
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.8e-22 109.8 243 41.2
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 2.4e-22 109.4 246 40.2
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 2.4e-22 109.4 246 40.2
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 2.4e-22 109.4 117 61.5
Nn2g12708 Nelumbo nucifera HOM05D003245 ORTHO05D004125 2.4e-22 109.4 117 60.7
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 2.4e-22 109.4 117 61.5
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 3.1e-22 109.0 234 42.3
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 3.1e-22 109.0 117 60.7
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 3.1e-22 109.0 117 60.7
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 4.0e-22 108.6 117 60.7
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 4.0e-22 108.6 117 60.7
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 4.0e-22 108.6 244 41.4
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 4.0e-22 108.6 253 39.1
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 5.3e-22 108.2 253 40.3
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 9.0e-22 107.5 117 59.8
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 9.0e-22 107.5 249 39.8
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 9.0e-22 107.5 117 59.8
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 1.2e-21 107.1 117 58.1
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 1.2e-21 107.1 235 41.3
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 1.2e-21 107.1 117 59.0
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 2.0e-21 106.3 117 59.8
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 2.6e-21 105.9 117 59.8
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 3.4e-21 105.5 230 41.7
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 1.7e-20 103.2 254 40.2
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 2.9e-20 102.4 115 56.5
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 3.8e-20 102.1 239 38.1
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 4.9e-20 101.7 239 39.3
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 6.5e-20 101.3 115 55.7
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 6.5e-20 101.3 115 58.3
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 1.1e-19 100.5 122 54.1
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 1.4e-19 100.1 236 37.3
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 2.5e-19 99.4 166 47.6
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 3.2e-19 99.0 105 60.0
Nitab4.5_0007820g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 2.7e-18 95.9 136 51.5
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 2.7e-18 95.9 114 53.5
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 7.9e-18 94.4 116 54.3
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 1.0e-17 94.0 104 59.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.3e-17 93.6 104 58.7
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 2.3e-17 92.8 104 57.7
Actinidia04152 Actinidia chinensis HOM05D003245 ORTHO05D004125 3.9e-17 92.0 53 94.3
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 3.9e-17 92.0 113 48.7
Gohir.D02G107400 Gossypium hirsutum HOM05D003245 ORTHO05D004125 8.7e-17 90.9 100 59.0
Oeu056516.1 Olea europaea HOM05D002774 ORTHO05D000116 8.7e-17 90.9 102 56.9
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 1.5e-16 90.1 143 50.3
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 1.5e-16 90.1 107 55.1
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 5.7e-16 88.2 148 43.2
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 4.8e-15 85.1 63 74.6
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 4.8e-15 85.1 113 46.9
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 4.8e-15 85.1 121 44.6
Sopen07g007360 Solanum pennellii HOM05D003245 ORTHO05D004125 1.4e-14 83.6 53 88.7
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.8e-14 83.2 194 41.2
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.8e-14 83.2 110 46.4
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.8e-14 83.2 110 46.4
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 1.8e-14 83.2 224 36.6
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 5.3e-14 81.6 220 36.8
SMO364G0848 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 1.5e-13 80.1 127 41.7
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 2.6e-13 79.3 49 91.8
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 2.9e-12 75.9 87 54.0
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.4e-11 73.6 87 52.9
Cre07.g326400 Chlamydomonas reinhardtii HOM05D003245 ORTHO05D004125 3.9e-09 65.5 52 61.5
PRCOL_00000817 Prasinoderma coloniale HOM05D003245 ORTHO05D004125 3.3e-08 62.4 108 37.0
BraA03t15022Z Brassica rapa HOM05D003245 ORTHO05D004125 8.2e-07 57.8 78 50.0
C07p57740 Brassica napus HOM05D003245 ORTHO05D098710 1.8e-06 56.6 43 74.4
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 4.1e-06 55.5 28 89.3


User provided reference genes

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