Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-173 612.8 292 100.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 7.1e-167 590.5 292 96.2
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-161 573.2 292 93.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 7.1e-159 563.9 292 91.8
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 1.6e-155 552.7 292 90.1
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.5e-145 519.6 292 83.9
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.5e-137 491.5 288 80.9
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.4e-130 469.2 281 79.7
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.9e-127 459.5 291 75.3
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 4.2e-127 458.4 281 77.9
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.1e-126 454.5 291 74.2
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.9e-124 449.5 289 74.0
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 4.8e-123 444.9 290 72.8
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 6.3e-123 444.5 290 72.8
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.1e-122 443.7 289 73.0
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 7.7e-121 437.6 290 71.7
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 7.7e-121 437.6 290 71.7
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 7.7e-121 437.6 290 71.7
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 9.4e-119 430.6 294 69.4
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.1e-118 429.5 320 67.2
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.6e-118 428.3 308 68.2
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-117 426.0 294 69.4
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 3.9e-117 425.2 295 68.8
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 6.7e-117 424.5 320 66.9
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 6.7e-117 424.5 294 68.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.1e-116 423.7 293 71.3
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.3e-115 420.2 299 68.2
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.4e-114 416.8 320 65.0
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 5.3e-114 414.8 283 71.4
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 5.5e-111 404.8 242 78.9
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 2.7e-110 402.5 283 70.0
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 2.3e-109 399.4 293 64.8
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 3.0e-109 399.1 286 69.9
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 3.0e-109 399.1 286 69.9
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 3.0e-109 399.1 286 69.9
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 6.7e-109 397.9 283 69.6
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 6.7e-109 397.9 289 66.8
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 8.8e-109 397.5 286 69.6
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.4e-106 390.2 290 65.9
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 5.9e-105 384.8 293 62.8
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 3.7e-99 365.5 282 63.1
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 3.5e-97 359.0 231 68.0
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 5.9e-97 358.2 281 59.8
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.3e-96 357.1 300 56.0
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.8e-96 355.5 310 55.2
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 1.1e-95 354.0 297 56.9
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 1.1e-95 354.0 231 66.2
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.5e-95 353.6 231 66.7
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.9e-95 353.2 282 59.9
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 3.2e-95 352.4 280 59.3
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-94 350.1 278 58.3
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-94 350.1 278 58.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 3.6e-94 349.0 302 57.0
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 3.6e-94 349.0 278 57.9
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 4.7e-94 348.6 284 56.3
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.7e-94 348.6 284 56.7
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.0e-93 347.4 284 57.4
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.4e-93 347.1 300 55.3
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 5.2e-93 345.1 265 61.1
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 6.8e-93 344.7 249 60.2
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 8.8e-93 344.4 247 62.3
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.2e-92 344.0 285 56.8
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.5e-92 343.6 269 56.1
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.5e-92 343.6 293 56.7
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 2.6e-92 342.8 302 55.3
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 2.6e-92 342.8 302 55.3
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 2.6e-92 342.8 302 55.3
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 4.4e-92 342.0 293 54.9
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.7e-92 341.7 279 57.7
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 5.7e-92 341.7 305 53.8
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.2e-91 339.7 293 54.6
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 2.8e-91 339.3 278 57.6
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 4.8e-91 338.6 287 56.1
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 8.3e-91 337.8 308 52.6
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 8.3e-91 337.8 292 55.1
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.1e-90 337.4 293 54.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.1e-90 337.4 275 56.7
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.1e-90 337.4 307 54.7
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.1e-90 337.4 283 55.5
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 1.4e-90 337.0 303 54.8
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.4e-90 337.0 304 53.9
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.8e-90 336.7 266 59.0
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.8e-90 336.7 260 59.6
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 4.1e-90 335.5 294 55.4
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 7.0e-90 334.7 307 54.4
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 9.1e-90 334.3 282 52.8
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 9.1e-90 334.3 282 57.1
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.6e-89 333.6 265 58.1
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 3.5e-89 332.4 274 55.5
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 1.0e-88 330.9 236 61.4
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.0e-88 330.9 292 54.8
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 1.3e-88 330.5 279 55.2
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.9e-87 326.6 233 61.8
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 2.5e-87 326.2 273 54.9
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 5.5e-87 325.1 236 60.2
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 7.2e-87 324.7 240 59.6
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 2.1e-86 323.2 301 51.2
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.7e-86 322.8 273 56.0
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 3.6e-86 322.4 270 54.4
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.4e-85 320.5 278 54.3
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 3.0e-85 319.3 291 52.2
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 4.0e-85 318.9 280 54.6
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 4.0e-85 318.9 239 59.0
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 1.5e-84 317.0 228 61.4
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 1.5e-84 317.0 225 62.2
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.0e-84 316.6 253 56.1
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.4e-84 315.8 288 51.7
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.4e-84 315.5 306 49.0
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 5.7e-84 315.1 282 51.8
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 7.5e-84 314.7 305 49.5
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.2e-83 313.2 273 51.6
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 8.3e-83 311.2 232 59.9
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.1e-82 310.8 253 54.2
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 9.2e-82 307.8 270 53.7
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 1.6e-81 307.0 236 58.5
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 2.0e-81 306.6 286 50.3
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 3.5e-81 305.8 275 53.1
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 5.0e-80 302.0 227 59.5
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 5.0e-80 302.0 296 46.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 8.6e-80 301.2 296 46.6
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 7.3e-79 298.1 225 54.7
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-78 297.4 200 70.0
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.1e-78 296.6 216 60.2
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.1e-78 296.6 230 56.5
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 5.7e-76 288.5 240 54.6
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 7.5e-76 288.1 197 66.0
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 9.8e-76 287.7 238 56.3
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 2.9e-75 286.2 264 51.1
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 4.9e-75 285.4 222 57.2
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.4e-74 283.9 240 54.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.8e-74 283.5 257 47.1
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 2.4e-74 283.1 209 60.3
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.7e-73 279.6 277 46.9
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 4.6e-73 278.9 221 54.3
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.8e-70 269.6 295 47.1
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.6e-70 269.2 239 51.0
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 8.0e-70 268.1 229 51.1
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 7.5e-68 261.5 195 61.5
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 4.1e-66 255.8 227 52.4
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.0e-64 251.1 301 44.2
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 2.5e-63 246.5 287 43.2
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 7.3e-63 245.0 219 52.1
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.8e-62 243.0 278 45.7
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.6e-62 242.7 219 51.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 1.2e-60 237.7 233 53.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 4.1e-58 229.2 227 45.8
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 5.4e-58 228.8 281 42.7
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 9.2e-58 228.0 230 46.5
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.3e-56 224.2 230 46.1
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.3e-56 223.4 243 45.3
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.9e-55 220.3 237 44.3
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.3e-55 219.2 226 44.2
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 9.5e-55 218.0 245 43.3
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 8.1e-54 214.9 247 40.5
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 1.5e-52 210.7 154 59.7
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 5.8e-52 208.8 251 41.0
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 2.4e-50 203.4 245 41.2
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.4e-50 203.4 260 40.0
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.5e-49 199.5 174 55.7
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 4.6e-49 199.1 264 42.4
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 6.0e-49 198.7 194 47.9
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.0e-48 198.0 222 42.3
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.8e-46 189.9 194 45.4
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 8.1e-46 188.3 225 44.9
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.8e-45 187.2 105 80.0
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.4e-44 183.0 130 60.0
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 4.4e-44 182.6 220 40.9
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 4.2e-42 176.0 191 42.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 2.1e-41 173.7 161 53.4
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.1e-40 169.1 315 31.1
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 5.6e-39 165.6 145 51.7
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.2e-33 147.9 109 58.7
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-32 144.4 95 67.4
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 5.8e-28 129.0 87 67.8
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 9.3e-18 95.1 49 79.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 2.0e-12 77.4 96 42.7
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 2.0e-12 77.4 79 48.1
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 1.8e-08 64.3 41 63.4


User provided reference genes

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