Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 0.0e+00 1201.4 677 100.0
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 0.0e+00 1181.0 679 98.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 0.0e+00 1179.5 679 98.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 0.0e+00 1104.0 680 92.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 0.0e+00 1080.5 683 91.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 8.1e-291 1003.4 681 86.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.0e-289 998.8 683 85.1
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.3e-280 969.5 680 83.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.1e-279 966.5 680 84.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-278 963.0 680 83.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.8e-274 949.1 680 83.1
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.6e-270 934.5 681 80.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.9e-264 915.2 685 81.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.2e-263 910.6 680 80.1
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 6.5e-256 887.5 681 75.9
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.0e-253 878.6 683 77.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.0e-232 810.4 556 85.4
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.3e-224 782.7 692 66.6
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.5e-212 743.4 691 69.9
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 3.5e-209 732.3 693 67.2
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.0e-201 706.4 706 61.8
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.1e-194 681.4 709 59.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 5.4e-186 655.2 699 62.7
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.4e-178 630.6 698 55.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.8e-173 613.6 699 60.1
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.3e-173 612.1 699 60.1
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.5e-172 609.0 699 60.1
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.2e-170 602.8 698 59.2
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 4.6e-169 599.0 696 56.5
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.8e-168 597.0 698 58.7
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.3e-167 592.8 698 58.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 9.6e-167 591.3 697 58.8
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.8e-166 589.7 699 59.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.7e-166 589.3 697 56.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.5e-164 583.9 697 57.1
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 5.8e-164 582.0 699 54.9
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.7e-163 580.5 695 56.8
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 4.9e-163 578.9 700 56.6
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.1e-162 577.8 706 56.7
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.4e-162 576.6 693 54.7
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.6e-156 556.6 705 50.4
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.0e-155 554.7 705 55.2
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-155 554.3 705 53.8
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.2e-154 549.7 703 54.9
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 7.1e-154 548.5 696 53.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.6e-153 547.4 710 51.8
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.9e-153 545.0 706 53.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.7e-152 541.6 709 54.9
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.7e-151 538.9 725 50.9
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.7e-150 536.2 708 54.2
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 6.3e-150 535.4 705 52.8
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.4e-149 534.3 702 51.0
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.4e-149 533.5 707 53.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 9.0e-149 531.6 705 53.9
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 9.0e-149 531.6 700 53.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.2e-148 531.2 713 51.3
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.6e-148 530.0 756 46.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 4.5e-148 529.3 699 53.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 5.9e-148 528.9 709 51.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 3.8e-147 526.2 706 49.9
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.5e-146 523.5 698 54.4
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 9.4e-146 521.5 708 52.8
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.2e-145 521.2 699 53.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.6e-145 520.8 698 54.2
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 3.6e-145 519.6 704 53.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 4.6e-145 519.2 731 51.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 4.6e-145 519.2 693 54.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.8e-144 517.3 703 53.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.0e-144 516.5 708 51.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.9e-143 513.8 710 49.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 7.4e-143 511.9 695 53.8
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.8e-141 507.3 700 52.1
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 9.1e-141 505.0 670 54.5
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.5e-140 504.2 704 51.1
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.0e-139 501.5 692 52.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.9e-139 500.0 708 50.0
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 3.8e-139 499.6 703 51.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.5e-138 496.9 708 49.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.5e-138 496.9 708 52.0
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.2e-138 496.5 689 50.9
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 7.2e-138 495.4 707 51.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 7.2e-138 495.4 704 51.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 9.4e-138 495.0 765 41.6
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.2e-137 494.6 709 48.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.7e-137 492.7 704 51.4
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 3.3e-135 486.5 691 51.7
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.8e-133 480.7 743 47.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.3e-133 479.2 708 51.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 7.0e-133 478.8 705 50.2
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.6e-132 476.9 633 56.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 8.5e-131 471.9 711 51.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.4e-130 471.1 723 49.2
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.2e-129 468.0 643 55.4
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.2e-129 468.0 707 51.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 6.1e-129 465.7 705 49.6
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.4e-128 464.5 708 51.0
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.0e-127 460.7 699 46.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.0e-127 460.7 637 55.1
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 3.1e-125 453.4 696 50.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 3.0e-120 436.8 712 48.3
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.4e-119 433.0 699 42.9
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 9.7e-119 431.8 692 49.0
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.5e-116 423.3 701 40.1
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.7e-113 413.7 704 41.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.0e-112 411.8 698 44.1
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.0e-112 411.8 693 42.7
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 5.2e-112 409.5 638 52.4
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.4e-111 406.8 700 40.7
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.3e-107 394.0 472 59.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.7e-105 386.3 692 41.9
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.2e-103 381.7 536 45.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 8.0e-97 359.0 627 49.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.8e-96 357.8 519 51.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.6e-90 336.3 522 45.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-89 334.0 514 52.3
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.5e-84 317.0 528 49.1
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.4e-78 296.2 525 41.1
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.4e-77 294.3 530 37.4
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 4.7e-73 280.0 708 39.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.1e-72 278.9 460 41.1
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.3e-67 261.9 421 48.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 3.1e-64 250.8 277 60.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.1e-61 242.3 253 70.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 5.4e-61 240.0 134 89.6
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 3.9e-59 233.8 343 44.3
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.6e-57 227.3 425 36.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 5.8e-55 219.9 133 81.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.4e-53 215.3 316 48.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.3e-53 212.6 478 34.9
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-51 209.1 459 35.7
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.2e-47 195.7 706 30.5
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.3e-46 192.2 131 72.5
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.7e-44 184.5 252 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.6e-41 175.3 553 28.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 3.7e-41 174.1 128 74.2
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 4.5e-39 167.2 196 51.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 8.4e-38 162.9 269 46.1
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.6e-36 158.7 134 62.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 6.9e-32 143.3 125 57.6
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.8e-30 137.5 188 50.5
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-29 135.6 122 53.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 7.9e-28 129.8 514 29.0
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.7e-27 126.7 157 55.4
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 9.7e-26 122.9 129 48.1
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 4.1e-24 117.5 109 55.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.2e-23 115.9 195 48.7
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 3.4e-23 114.4 142 58.5
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-20 103.6 98 57.1
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-18 97.4 94 56.4
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.2e-17 95.1 70 65.7
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 9.1e-16 89.7 285 29.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.8e-14 84.3 107 50.5
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.2e-13 80.9 40 92.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 7.2e-13 80.1 151 37.1
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 7.2e-13 80.1 247 29.1
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.7e-12 78.2 99 41.4
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 3.6e-12 77.8 75 53.3
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 8.0e-12 76.6 257 27.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 3.9e-11 74.3 124 35.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-11 73.9 97 40.2
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-11 73.9 97 40.2
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.7e-11 73.6 97 38.1
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.4e-10 70.1 61 63.9
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 7.4e-10 70.1 69 58.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 7.4e-10 70.1 51 58.8
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-09 68.9 97 36.1
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-09 68.2 61 62.3
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-09 68.2 61 62.3
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-09 68.2 61 62.3
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-09 68.2 61 62.3
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.2e-09 66.6 61 60.7
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.3e-08 63.9 97 34.0
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.2e-07 62.8 72 44.4
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-07 61.6 97 34.0
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-06 58.5 97 34.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-06 57.8 97 34.0
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.0e-06 57.4 39 59.0
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.0e-06 57.4 39 59.0


User provided reference genes

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