Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 2.4e-233 812.0 469 100.0
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 2.7e-208 728.8 472 91.3
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-205 719.9 470 91.1
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 9.8e-203 710.3 470 86.6
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-197 693.0 478 86.8
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.3e-194 683.3 470 87.2
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.1e-188 662.1 481 75.1
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.3e-186 656.8 484 80.6
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.8e-186 655.2 483 80.3
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.2e-185 650.6 483 79.9
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.1e-184 649.4 477 73.8
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 3.0e-183 645.6 473 79.1
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 8.7e-183 644.0 473 80.5
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-182 643.3 473 78.6
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.5e-182 642.5 487 77.6
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 3.3e-182 642.1 481 71.9
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 4.9e-178 628.2 477 71.1
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.5e-158 562.8 458 65.1
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.4e-156 557.0 485 69.3
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.9e-154 548.5 482 63.5
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.0e-151 539.3 472 65.5
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 8.7e-151 537.7 447 71.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.9e-150 536.6 471 68.4
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 9.7e-150 534.3 471 68.2
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 8.2e-149 531.2 472 67.2
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.8e-148 530.0 482 65.4
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 5.3e-148 528.5 479 60.8
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.2e-147 527.3 467 60.4
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-147 525.8 472 65.9
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.5e-147 525.4 461 62.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 5.9e-147 525.0 471 62.8
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.3e-146 523.9 486 63.6
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.9e-146 522.7 473 63.8
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 2.9e-146 522.7 475 62.3
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.8e-146 522.3 461 62.7
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 3.8e-146 522.3 485 60.8
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 6.5e-146 521.5 477 62.5
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.5e-145 518.5 483 64.4
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 7.2e-145 518.1 475 65.9
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 9.4e-145 517.7 476 68.3
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 6.1e-144 515.0 493 60.6
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.4e-143 513.8 472 64.0
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.3e-143 513.1 469 62.5
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.9e-143 512.3 469 62.5
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.8e-143 511.1 490 64.1
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-142 510.4 473 64.5
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 5.7e-142 508.4 469 63.5
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 8.2e-141 504.6 485 59.4
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 2.4e-140 503.1 478 59.4
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 5.3e-140 501.9 480 62.5
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 9.1e-140 501.1 454 58.8
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 9.1e-140 501.1 486 56.8
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 5.9e-139 498.4 488 58.2
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.3e-138 497.3 476 64.1
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.2e-138 496.5 477 64.2
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 5.0e-138 495.4 491 58.9
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 5.0e-138 495.4 486 61.9
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 6.5e-138 495.0 486 62.6
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 8.5e-138 494.6 478 63.4
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 8.5e-138 494.6 492 58.7
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.1e-137 494.2 484 58.1
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.1e-137 494.2 382 72.3
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.1e-137 494.2 474 64.3
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.9e-137 493.4 484 62.6
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.5e-137 493.0 478 63.0
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 3.2e-137 492.7 475 66.9
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 4.2e-137 492.3 482 59.3
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 5.5e-137 491.9 483 56.3
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 9.4e-137 491.1 462 58.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.1e-136 490.0 466 61.8
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 3.6e-136 489.2 385 65.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 6.1e-136 488.4 479 56.8
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-135 487.6 487 62.4
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.0e-135 487.6 478 58.4
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.4e-135 487.3 486 57.4
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.3e-135 486.5 481 56.1
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.9e-135 485.7 468 57.9
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 3.9e-135 485.7 484 57.6
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 3.9e-135 485.7 478 58.6
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.1e-135 485.3 477 57.4
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 5.1e-135 485.3 490 55.1
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.5e-134 483.8 472 64.0
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.4e-134 482.3 471 56.3
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 5.7e-134 481.9 470 60.4
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 7.4e-134 481.5 481 56.1
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 9.7e-134 481.1 468 59.4
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.3e-133 480.7 470 56.8
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.3e-133 480.7 446 59.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.7e-133 480.3 484 58.1
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.2e-133 479.9 482 60.2
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.8e-133 478.8 477 56.8
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 6.3e-133 478.4 467 57.0
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 6.3e-133 478.4 482 63.7
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 6.3e-133 478.4 495 54.7
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 8.2e-133 478.0 449 57.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.8e-132 476.9 484 55.4
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.8e-132 476.9 475 58.7
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.8e-132 476.9 483 56.1
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.5e-131 473.8 425 58.8
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.5e-131 473.8 482 56.0
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.0e-131 473.4 386 68.4
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 2.0e-131 473.4 482 56.4
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 3.5e-131 472.6 396 62.4
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 3.5e-131 472.6 492 56.5
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 5.9e-131 471.9 474 57.8
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.7e-130 470.3 466 58.2
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.9e-130 469.5 480 55.0
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 5.0e-130 468.8 488 56.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 2.5e-129 466.5 479 62.0
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 2.5e-129 466.5 469 56.1
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.2e-129 466.1 448 56.9
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 7.2e-129 464.9 494 55.7
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 9.4e-129 464.5 499 54.3
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.7e-128 463.0 479 56.4
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 3.6e-128 462.6 471 57.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.9e-127 459.1 466 56.4
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 6.7e-127 458.4 464 56.2
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.0e-126 456.8 486 54.7
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.6e-126 456.4 387 61.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 7.4e-126 454.9 481 57.8
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.3e-125 454.1 461 59.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.8e-125 453.0 475 57.5
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 2.8e-125 453.0 477 53.5
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 8.2e-125 451.4 476 63.9
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.1e-124 449.5 267 81.6
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 4.1e-124 449.1 480 53.8
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 4.1e-124 449.1 486 53.1
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 7.0e-124 448.4 478 57.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 3.5e-123 446.0 472 57.8
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 4.5e-123 445.7 478 54.2
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.0e-122 444.5 469 53.3
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 4.2e-121 439.1 481 55.7
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 7.2e-121 438.3 483 55.1
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.4e-119 434.1 392 60.2
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.0e-119 432.6 485 49.3
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 9.7e-118 427.9 441 55.1
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.2e-117 426.8 384 57.6
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.8e-117 426.4 377 58.6
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.1e-116 422.5 313 66.5
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 7.0e-116 421.8 439 58.1
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.6e-112 410.6 419 53.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.4e-110 402.9 501 50.7
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.4e-110 402.5 382 61.5
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.8e-110 401.4 385 56.4
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.3e-109 401.0 397 53.9
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.1e-105 387.9 401 55.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.3e-98 364.4 386 50.3
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 2.6e-94 350.1 377 51.7
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 7.5e-86 322.0 384 43.8
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 9.8e-86 321.6 460 45.2
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-76 291.2 339 48.1
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.2e-59 235.0 191 65.4
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 4.3e-57 226.5 195 76.4
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.3e-56 224.9 327 38.5
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 6.0e-51 206.1 363 35.5
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.8e-50 204.5 331 46.2
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 3.0e-50 203.8 217 50.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.8e-38 162.9 137 73.0
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 9.3e-36 155.6 117 62.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.1e-34 149.8 129 72.1
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.3e-33 146.7 147 51.7
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 9.0e-31 139.0 340 30.3
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.2e-30 138.7 145 55.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.0e-30 137.9 98 65.3
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.6e-30 137.5 129 63.6
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.7e-27 127.5 99 62.6
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 7.4e-25 119.4 304 33.9
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 2.6e-22 110.9 316 30.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.2e-21 107.8 124 46.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.2e-21 107.8 124 46.0
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 9.4e-20 102.4 276 29.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.5e-14 84.0 69 52.2
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.2e-11 75.5 109 45.9
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 6.1e-11 73.2 47 72.3
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 7.7e-06 56.2 124 46.0


User provided reference genes

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