Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1263.8 668 100.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1201.0 640 99.5
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1191.4 633 99.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1178.7 639 97.5
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1124.4 644 93.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1122.5 643 93.5
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 6.1e-307 1057.0 641 88.0
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 2.2e-301 1038.5 642 86.9
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 2.7e-294 1015.0 646 84.4
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 3.6e-291 1004.6 650 82.6
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 2.6e-289 998.4 646 83.6
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 2.2e-288 995.3 646 83.3
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 3.9e-277 958.0 642 82.9
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 1.2e-273 946.4 649 78.9
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 3.3e-260 901.7 590 84.7
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 3.3e-260 901.7 590 84.7
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 8.4e-240 833.9 651 69.3
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 8.0e-182 641.3 613 57.9
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 2.3e-181 639.8 623 57.1
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 1.8e-178 630.2 652 54.4
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.2e-177 627.5 615 56.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 1.2e-177 627.5 654 54.1
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 3.8e-176 622.5 612 56.7
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 6.6e-176 621.7 620 55.3
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 3.3e-175 619.4 617 55.1
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 3.3e-175 619.4 617 55.1
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 2.8e-174 616.3 619 56.1
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 4.7e-174 615.5 619 56.2
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 1.4e-173 614.0 619 56.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 1.4e-173 614.0 650 52.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 1.2e-172 610.9 650 52.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.8e-170 603.6 565 58.6
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 4.1e-170 602.4 617 54.9
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 1.6e-169 600.5 655 53.0
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 3.5e-169 599.4 647 51.8
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 7.8e-169 598.2 627 54.5
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 1.3e-168 597.4 619 54.8
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 1.7e-168 597.0 627 54.4
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 5.0e-168 595.5 628 54.5
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 1.5e-167 594.0 642 54.4
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 2.8e-166 589.7 637 53.5
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 2.3e-165 586.6 617 54.0
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 4.4e-164 582.4 624 53.7
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 5.8e-164 582.0 623 53.5
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 1.7e-163 580.5 616 54.2
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 1.7e-163 580.5 625 53.6
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 2.2e-163 580.1 622 53.2
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 9.2e-162 574.7 628 52.4
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 9.2e-162 574.7 636 51.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 2.0e-161 573.5 625 53.4
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 6.0e-161 572.0 598 54.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 1.3e-160 570.9 622 53.5
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 3.0e-160 569.7 622 51.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 3.0e-160 569.7 620 52.7
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 8.6e-160 568.2 646 50.0
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 1.9e-159 567.0 647 50.9
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 3.3e-159 566.2 668 50.1
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 1.1e-157 561.2 650 49.4
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 2.3e-157 560.1 624 51.0
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 1.7e-155 553.9 617 50.9
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 2.9e-155 553.1 647 50.5
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 3.7e-155 552.7 651 50.4
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 5.4e-154 548.9 617 50.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 9.2e-154 548.1 640 49.7
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 1.2e-153 547.7 628 50.6
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 1.6e-153 547.4 649 50.4
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 2.1e-153 547.0 617 50.9
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 3.5e-153 546.2 612 50.0
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 7.8e-153 545.0 628 51.0
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 3.0e-152 543.1 629 49.6
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 6.6e-152 542.0 620 51.1
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 1.5e-151 540.8 627 50.6
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 2.5e-151 540.0 620 51.0
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 1.8e-149 533.9 623 50.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 8.9e-149 531.6 594 52.2
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.5e-148 530.8 618 48.9
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 2.6e-148 530.0 642 48.1
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 9.9e-148 528.1 659 47.3
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 2.2e-147 526.9 530 56.4
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 1.1e-146 524.6 628 49.7
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 2.4e-146 523.5 665 48.7
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 3.2e-146 523.1 623 48.8
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.6e-145 520.8 622 49.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.3e-144 517.7 513 57.1
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 1.7e-144 517.3 611 50.4
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 2.3e-144 516.9 593 50.4
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 6.6e-144 515.4 594 50.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.3e-143 511.9 570 50.2
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 1.6e-142 510.8 672 47.2
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 2.1e-142 510.4 628 48.2
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 3.4e-140 503.1 635 47.1
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 7.6e-140 501.9 617 48.0
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.9e-139 499.2 488 54.9
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 1.9e-138 497.3 649 46.5
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.4e-138 496.9 622 47.3
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 4.0e-133 479.6 619 46.2
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 4.0e-133 479.6 566 48.8
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 5.3e-133 479.2 632 46.0
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 4.2e-130 469.5 620 46.3
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 4.6e-129 466.1 649 44.1
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.6e-124 450.3 571 49.6
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 1.1e-122 444.9 680 42.2
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 2.5e-119 433.7 610 45.7
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 6.4e-115 419.1 584 44.7
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.8e-110 403.7 582 42.6
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 4.0e-109 399.8 357 58.8
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 2.3e-88 330.9 597 39.5
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.5e-83 312.4 617 36.0
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 4.8e-78 296.6 607 36.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.0e-72 278.9 745 30.3
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-70 271.6 313 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.8e-69 268.1 693 32.6
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 8.3e-62 242.7 427 40.3
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.5e-58 231.9 318 44.3
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 3.5e-52 210.7 717 28.0
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 4.7e-49 200.3 366 37.4
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 7.5e-47 193.0 157 62.4
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.6e-42 176.8 149 59.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 4.9e-38 163.7 775 24.9
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 5.2e-32 143.7 103 71.8
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.9e-30 137.9 148 49.3
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 2.6e-23 114.8 122 51.6
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 1.3e-09 69.3 48 75.0
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 6.4e-06 57.0 362 25.7


User provided reference genes

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