Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31550 Brassica napus HOM05D000104 ORTHO05D004024 3.3e-216 755.0 439 100.0
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 5.2e-129 465.3 487 64.9
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 2.6e-125 453.0 501 62.3
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 5.0e-116 422.2 486 61.7
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 1.8e-113 413.7 489 62.2
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 1.3e-103 380.9 495 55.8
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 2.2e-103 380.2 502 51.4
C03p30340 Brassica napus HOM05D000104 ORTHO05D004024 1.4e-102 377.5 504 53.0
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 7.0e-102 375.2 507 57.6
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.3e-100 370.9 495 54.7
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 9.5e-99 364.8 529 53.1
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 9.8e-96 354.8 527 53.9
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 1.1e-94 351.3 513 48.3
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 2.7e-93 346.7 526 53.8
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 4.6e-93 345.9 498 56.4
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 1.4e-89 334.3 438 51.6
BcaC06g34219 Brassica carinata HOM05D000104 ORTHO05D004024 1.5e-88 330.9 503 48.3
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 3.0e-84 316.6 482 53.7
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 2.1e-82 310.5 405 51.6
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 2.3e-81 307.0 501 51.1
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 4.6e-45 186.4 525 36.8
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 1.3e-44 184.9 457 34.4
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 6.7e-44 182.6 529 35.7
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 1.1e-43 181.8 469 34.8
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 1.5e-43 181.4 469 34.3
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 1.9e-43 181.0 493 34.3
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 2.5e-43 180.6 361 40.4
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 2.8e-42 177.2 475 34.7
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 2.8e-42 177.2 460 34.6
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 2.8e-42 177.2 477 35.2
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.8e-42 176.4 476 33.2
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 4.8e-42 176.4 505 33.7
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 6.2e-42 176.0 476 33.2
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.1e-41 175.3 476 33.2
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 1.1e-41 175.3 460 34.3
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.4e-41 174.9 476 33.2
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.4e-41 174.9 476 33.2
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 2.4e-41 174.1 459 34.6
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.1e-41 173.3 478 33.1
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.3e-41 172.9 452 35.0
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 6.9e-41 172.6 529 31.6
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.2e-40 171.8 476 33.2
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 2.0e-40 171.0 466 35.0
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 2.6e-40 170.6 473 34.9
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.5e-40 169.9 535 34.8
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 1.3e-39 168.3 460 33.0
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.2e-39 167.5 536 33.6
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 2.9e-39 167.2 464 34.1
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.9e-39 167.2 453 34.2
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 3.8e-39 166.8 467 34.3
Dinv43832 Davidia involucrata HOM05D000104 ORTHO05D004024 6.5e-39 166.0 440 34.5
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 1.4e-38 164.9 472 32.4
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.9e-38 164.5 469 33.0
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 1.2e-37 161.8 474 33.5
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 1.0e-36 158.7 461 33.0
COL.COLO4_12729 Corchorus olitorius HOM05D000104 ORTHO05D004024 2.3e-36 157.5 438 34.5
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.1e-36 156.4 454 33.3
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 4.3e-35 153.3 495 32.9
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 7.4e-35 152.5 527 32.3
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 7.4e-35 152.5 456 31.8
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.3e-34 151.8 522 31.4
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 2.2e-34 151.0 486 32.7
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 2.8e-34 150.6 471 32.5
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 4.8e-34 149.8 475 30.5
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 1.8e-33 147.9 491 32.2
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 5.3e-33 146.4 472 31.1
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.3e-33 146.4 536 32.3
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 5.3e-33 146.4 467 30.8
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.2e-32 145.2 477 32.3
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 1.5e-32 144.8 515 29.7
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.0e-32 144.4 522 30.5
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 3.4e-32 143.7 472 31.1
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 3.4e-32 143.7 503 30.4
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 5.9e-32 142.9 464 31.2
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 1.0e-31 142.1 519 32.9
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 1.7e-31 141.4 516 30.4
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 1.4e-30 138.3 458 30.6
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 1.4e-30 138.3 539 32.8
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 2.5e-30 137.5 468 31.0
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.5e-30 137.5 458 30.6
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 4.2e-30 136.7 460 30.7
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 7.2e-30 136.0 458 30.1
Rhsim01G0163000 Rhododendron simsii HOM05D000104 ORTHO05D004024 2.1e-29 134.4 417 32.1
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 2.7e-29 134.0 485 31.1
Lalb_Chr17g0339491 Lupinus albus HOM05D000104 ORTHO05D004024 2.7e-29 134.0 468 32.1
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 2.7e-29 134.0 461 29.9
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 3.6e-29 133.7 470 30.6
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 4.6e-29 133.3 464 31.7
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 6.1e-29 132.9 527 29.8
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 3.0e-28 130.6 466 32.0
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 5.1e-28 129.8 461 32.1
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 8.8e-28 129.0 471 31.2
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 2.0e-27 127.9 362 34.3
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 5.7e-27 126.3 534 30.3
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 7.4e-27 125.9 466 32.0
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 1.3e-26 125.2 502 30.5
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.8e-26 124.0 527 32.4
VMungo1383G0174 Vigna mungo HOM05D000104 ORTHO05D004024 2.8e-26 124.0 457 31.7
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 3.7e-26 123.6 457 29.8
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 3.7e-26 123.6 464 30.8
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 4.8e-26 123.2 458 31.4
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 8.2e-26 122.5 471 30.1
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 1.1e-25 122.1 420 32.4
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.1e-25 122.1 446 30.5
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 1.4e-25 121.7 446 30.9
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 5.3e-25 119.8 522 29.1
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 2.6e-24 117.5 462 31.8
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 7.7e-24 115.9 454 29.7
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 1.0e-23 115.5 461 29.5
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 2.2e-23 114.4 467 30.6
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.2e-23 114.4 460 29.6
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 6.5e-23 112.8 522 28.5
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 6.5e-23 112.8 455 32.1
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 8.5e-23 112.5 455 29.0
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 8.5e-23 112.5 459 30.3
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 1.1e-22 112.1 441 30.6
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 1.4e-22 111.7 439 31.4
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 2.5e-22 110.9 534 30.9
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 6.1e-21 106.3 410 30.5
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 7.9e-21 105.9 458 29.7
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 5.1e-20 103.2 547 28.3
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 1.5e-19 101.7 379 30.9
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 4.4e-19 100.1 482 27.2
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 9.7e-19 99.0 469 29.2
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 1.7e-18 98.2 468 29.3
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 3.7e-18 97.1 88 60.2
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 8.2e-18 95.9 537 28.1
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 8.2e-18 95.9 357 31.1
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 1.4e-17 95.1 474 27.6
Oeu060227.1 Olea europaea HOM05D000104 ORTHO05D004024 1.2e-16 92.0 231 35.9
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 1.7e-15 88.2 477 29.8
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.7e-15 88.2 117 50.4
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 1.1e-14 85.5 475 28.0
HanXRQChr16g0522401 Helianthus annuus HOM05D000104 ORTHO05D004024 1.1e-14 85.5 475 28.0
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.5e-14 85.1 478 28.5
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 4.2e-14 83.6 384 29.4
CDE02G2573 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 3.6e-13 80.5 128 44.5
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 3.6e-13 80.5 87 56.3
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 8.0e-13 79.3 438 29.5
unitig_22.g5348 Utricularia gibba HOM05D000104 ORTHO05D004024 8.0e-13 79.3 169 40.2
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 4.4e-11 73.6 44 77.3
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 4.4e-11 73.6 44 77.3
unitig_8.g3795 Utricularia gibba HOM05D000104 ORTHO05D017821 9.7e-11 72.4 492 28.0
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 6.3e-10 69.7 447 26.6
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 8.2e-10 69.3 44 68.2
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 1.8e-09 68.2 44 63.6
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 5.3e-09 66.6 44 70.5
Pp3c13_14440 Physcomitrium patens HOM05D000104 ORTHO05D004024 9.1e-09 65.9 55 61.8
HPP92_022593 Vanilla planifolia HOM05D000104 ORTHO05D004024 9.1e-09 65.9 149 39.6
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.2e-08 65.5 459 25.7
MBI17_g33791_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.6e-08 65.1 224 30.8
Os02g0114033 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 2.0e-08 64.7 68 52.9
Pp3c3_15820 Physcomitrium patens HOM05D000104 ORTHO05D004024 2.0e-08 64.7 55 60.0
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 2.7e-08 64.3 44 68.2
SEGI_28802 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 2.7e-08 64.3 472 25.8
HPP92_025793 Vanilla planifolia HOM05D000104 ORTHO05D004024 7.7e-08 62.8 70 54.3
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 1.0e-07 62.4 68 52.9
unitig_22.g5349 Utricularia gibba HOM05D000104 ORTHO05D017821 2.2e-07 61.2 127 38.6
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 2.9e-07 60.8 44 63.6
SEGI_24766 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 7.2e-06 56.2 44 61.4


User provided reference genes

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