Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p30700 Brassica napus HOM05D003151 ORTHO05D032361 2.8e-99 365.5 219 100.0
BcaC06g34289 Brassica carinata HOM05D001308 ORTHO05D092968 7.2e-39 164.9 164 62.8
BcaC01g00613 Brassica carinata HOM05D003151 ORTHO05D032361 3.6e-38 162.5 156 64.1
BolC7t43616H Brassica oleracea HOM05D003151 ORTHO05D032361 5.7e-36 155.2 80 98.8
A07p01170 Brassica napus HOM05D003151 ORTHO05D003723 7.7e-25 118.2 77 81.8
BcaC06g36600 Brassica carinata HOM05D003151 ORTHO05D003723 3.8e-24 115.9 77 80.5
C07p02310 Brassica napus HOM05D003151 ORTHO05D003723 3.8e-24 115.9 77 80.5
BolC7t40640H Brassica oleracea HOM05D003151 ORTHO05D003723 3.8e-24 115.9 77 80.5
Thhalv10002058m.g Eutrema salsugineum HOM05D003151 ORTHO05D003723 2.5e-23 113.2 73 79.5
Sp3g32950 Schrenkiella parvula HOM05D003151 ORTHO05D003723 1.2e-22 110.9 77 77.9
AT2G19570 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 3.6e-22 109.4 77 72.7
AL3G48670 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 1.8e-21 107.1 77 71.4
BcaB03g16745 Brassica carinata HOM05D003151 ORTHO05D003723 8.8e-21 104.8 90 66.7
Carub.0003s3386 Capsella rubella HOM05D003151 ORTHO05D003723 7.5e-20 101.7 77 66.2
CARHR110010 Cardamine hirsuta HOM05D003151 ORTHO05D003723 6.5e-16 88.6 73 68.5
CARHR237490 Cardamine hirsuta HOM05D003151 ORTHO05D003723 1.5e-15 87.4 90 53.3
Aa31LG8G16580 Aethionema arabicum HOM05D003151 ORTHO05D003723 1.9e-15 87.0 73 58.9
BcaC06g36599 Brassica carinata HOM05D003151 ORTHO05D003723 1.9e-15 87.0 81 63.0
Thhalv10023108m.g Eutrema salsugineum HOM05D003151 ORTHO05D003723 1.9e-15 87.0 55 81.8
Sp7g27430 Schrenkiella parvula HOM05D003151 ORTHO05D003723 5.5e-15 85.5 84 59.5
A05p20750 Brassica napus HOM05D003151 ORTHO05D003723 2.1e-14 83.6 73 65.8
C07p57040 Brassica napus HOM05D003151 ORTHO05D003723 2.8e-14 83.2 88 55.7
A03p09280 Brassica napus HOM05D003151 ORTHO05D003723 4.7e-14 82.4 73 64.4
THA.LOC104801882 Tarenaya hassleriana HOM05D003151 ORTHO05D003723 4.7e-14 82.4 88 55.7
THA.LOC104803976 Tarenaya hassleriana HOM05D003151 ORTHO05D003723 1.0e-13 81.3 82 57.3
BolC7t46173H Brassica oleracea HOM05D003151 ORTHO05D003723 1.4e-13 80.9 88 53.4
A03p59000 Brassica napus HOM05D003151 ORTHO05D003723 4.0e-13 79.3 88 52.3
BcaNung00481 Brassica carinata HOM05D003151 ORTHO05D003723 5.2e-13 79.0 83 53.0
BraA03t14959Z Brassica rapa HOM05D003151 ORTHO05D003723 5.2e-13 79.0 88 52.3
CDE05G2742 Ceratophyllum demersum HOM05D003151 ORTHO05D003723 5.7e-12 75.5 86 51.2
Cpa.g.c31168 Carica papaya HOM05D003151 ORTHO05D003723 7.5e-12 75.1 93 50.5
Sabra06G0119300 Salix brachista HOM05D003151 ORTHO05D003723 7.5e-12 75.1 95 45.3
Thecc.09G091100 Theobroma cacao HOM05D003151 ORTHO05D003723 9.8e-12 74.7 99 45.5
Aa31LG2G20920 Aethionema arabicum HOM05D003151 ORTHO05D003723 1.3e-11 74.3 86 53.5
Aqoxy7G01240 Aquilegia oxysepala HOM05D003151 ORTHO05D003723 1.7e-11 73.9 80 52.5
Duzib187G1696 Durio zibethinus HOM05D003151 ORTHO05D003723 1.7e-11 73.9 99 44.4
ClCG03G015690 Citrullus lanatus HOM05D003151 ORTHO05D003723 2.8e-11 73.2 75 54.7
TAR626G1007 Trochodendron aralioides HOM05D003151 ORTHO05D003723 3.7e-11 72.8 109 41.3
Potri.006G150600 Populus trichocarpa HOM05D003151 ORTHO05D003723 4.9e-11 72.4 95 44.2
COL.COLO4_18213 Corchorus olitorius HOM05D003151 ORTHO05D003723 8.3e-11 71.6 99 43.4
Sed0008525 Sechium edule HOM05D003151 ORTHO05D003723 8.3e-11 71.6 70 55.7
CDE05G0195 Ceratophyllum demersum HOM05D003151 ORTHO05D003723 1.1e-10 71.2 86 47.7
CsaV3_1G040320 Cucumis sativus L. HOM05D003151 ORTHO05D003723 1.4e-10 70.9 75 54.7
Gohir.A05G029400 Gossypium hirsutum HOM05D003151 ORTHO05D003723 1.4e-10 70.9 99 41.4
TAR383G0148 Trochodendron aralioides HOM05D003151 ORTHO05D003723 1.8e-10 70.5 82 53.7
Gohir.D05G030900 Gossypium hirsutum HOM05D003151 ORTHO05D003723 2.4e-10 70.1 99 40.4
Gorai.009G031100 Gossypium raimondii HOM05D003151 ORTHO05D003723 2.4e-10 70.1 99 40.4
MELO3C015459.2 Cucumis melo HOM05D003151 ORTHO05D003723 3.1e-10 69.7 75 54.7
MD15G1205500 Malus domestica HOM05D003151 ORTHO05D003723 3.1e-10 69.7 70 51.4
CiPaw.03G217400 Carya illinoinensis HOM05D003151 ORTHO05D003723 4.1e-10 69.3 80 50.0
Manes.01G223600 Manihot esculenta HOM05D003151 ORTHO05D003723 4.1e-10 69.3 82 51.2
RcHm_v2.0_Chr2g0093131 Rosa chinensis HOM05D003151 ORTHO05D003723 4.1e-10 69.3 83 47.0
Gorai.004G284000 Gossypium raimondii HOM05D003151 ORTHO05D003723 5.4e-10 68.9 95 47.4
Gohir.A08G245300 Gossypium hirsutum HOM05D003151 ORTHO05D003723 7.0e-10 68.6 95 46.3
Ah.14g085250 Amaranthus hybridus HOM05D003151 ORTHO05D003723 9.2e-10 68.2 77 55.8
Duzib168G0375 Durio zibethinus HOM05D003151 ORTHO05D003723 9.2e-10 68.2 99 41.4
Prupe.7G211600 Prunus persica HOM05D003151 ORTHO05D003723 9.2e-10 68.2 70 52.9
Nn6g35445 Nelumbo nucifera HOM05D003151 ORTHO05D003723 1.2e-09 67.8 118 39.8
TWI32G1006 Tripterygium wilfordii HOM05D003151 ORTHO05D003723 1.2e-09 67.8 70 54.3
Gohir.D13G199300 Gossypium hirsutum HOM05D003151 ORTHO05D003723 1.6e-09 67.4 101 44.6
Potri.018G066400 Populus trichocarpa HOM05D003151 ORTHO05D003723 1.6e-09 67.4 95 41.1
SabraUnG0005300 Salix brachista HOM05D003151 ORTHO05D003723 1.6e-09 67.4 70 47.1
AT4G29610 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 2.0e-09 67.0 97 43.3
AUR62027484 Chenopodium quinoa HOM05D003151 ORTHO05D003723 2.0e-09 67.0 104 44.2
Gohir.A13G193500 Gossypium hirsutum HOM05D003151 ORTHO05D003723 2.0e-09 67.0 101 44.6
Sed0000540 Sechium edule HOM05D003151 ORTHO05D003723 2.0e-09 67.0 73 54.8
TWI34G0516 Tripterygium wilfordii HOM05D003151 ORTHO05D003723 2.0e-09 67.0 70 54.3
MD02G1076800 Malus domestica HOM05D003151 ORTHO05D003723 3.5e-09 66.2 70 50.0
Sabra18G0058900 Salix brachista HOM05D003151 ORTHO05D003723 3.5e-09 66.2 103 38.8
Gorai.013G228000 Gossypium raimondii HOM05D003151 ORTHO05D003723 4.5e-09 65.9 101 43.6
DCAR_024687 Daucus carota HOM05D003151 ORTHO05D003723 5.9e-09 65.5 81 45.7
Dinv42311 Davidia involucrata HOM05D003151 ORTHO05D003723 5.9e-09 65.5 84 50.0
Eucgr.C00902 Eucalyptus grandis HOM05D003151 ORTHO05D003723 1.0e-08 64.7 80 50.0
Lj2g0012329 Lotus japonicus HOM05D003151 ORTHO05D003723 1.3e-08 64.3 77 54.5
Manes.05G000800 Manihot esculenta HOM05D003151 ORTHO05D003723 1.3e-08 64.3 81 50.6
Nn8g39131 Nelumbo nucifera HOM05D003151 ORTHO05D003723 1.3e-08 64.3 79 45.6
CANSAT56G2773 Cannabis sativa HOM05D003151 ORTHO05D003723 1.7e-08 63.9 76 51.3
FAN28G1682 Fragaria x ananassa HOM05D003151 ORTHO05D003723 1.7e-08 63.9 83 45.8
Pp3c11_5250 Physcomitrium patens HOM05D003151 ORTHO05D003723 1.7e-08 63.9 113 38.1
Sc08g0008410 Simmondsia chinensis HOM05D003151 ORTHO05D003723 1.7e-08 63.9 85 49.4
Haze_25901 Corylus avellana HOM05D003151 ORTHO05D003723 2.3e-08 63.5 81 49.4
unitig_27.g24726 Utricularia gibba HOM05D003151 ORTHO05D003723 2.3e-08 63.5 82 41.5
EL10Ac8g19236 Beta vulgaris HOM05D003151 ORTHO05D003723 2.9e-08 63.2 90 43.3
CANSAT56G1065 Cannabis sativa HOM05D003151 ORTHO05D003723 3.8e-08 62.8 76 50.0
AUR62033993 Chenopodium quinoa HOM05D003151 ORTHO05D003723 5.0e-08 62.4 93 48.4
Ciclev10008864m.g Citrus clementina HOM05D003151 ORTHO05D003723 5.0e-08 62.4 88 43.2
Ca_25622_v3 Cicer arietinum L. HOM05D003151 ORTHO05D003723 6.6e-08 62.0 100 41.0
Dinv36756 Davidia involucrata HOM05D003151 ORTHO05D003723 6.6e-08 62.0 106 41.5
FAN26G1922 Fragaria x ananassa HOM05D003151 ORTHO05D003723 6.6e-08 62.0 83 45.8
FAN26G3264 Fragaria x ananassa HOM05D003151 ORTHO05D003723 6.6e-08 62.0 83 45.8
Hma1.2p1_0800F.1_g220060 Hydrangea macrophylla HOM05D003151 ORTHO05D003723 6.6e-08 62.0 101 37.6
Lalb_Chr05g0223631 Lupinus albus HOM05D003151 ORTHO05D003723 6.6e-08 62.0 70 52.9
Cfa003099 Carpinus fangiana HOM05D003151 ORTHO05D003723 1.1e-07 61.2 81 48.1
Carub.0007s1094 Capsella rubella HOM05D003151 ORTHO05D003723 1.5e-07 60.8 71 47.9
PSO063G1447 Papaver somniferum HOM05D003151 ORTHO05D003723 1.9e-07 60.5 94 41.5
PGR142G4167 Punica granatum HOM05D003151 ORTHO05D003723 1.9e-07 60.5 70 48.6
ECA234G2307 Erigeron canadensis HOM05D003151 ORTHO05D003723 3.3e-07 59.7 85 45.9
Pp3c1_4510 Physcomitrium patens HOM05D003151 ORTHO05D003723 3.3e-07 59.7 124 35.5
QL02p062866 Quercus lobata HOM05D003151 ORTHO05D003723 3.3e-07 59.7 74 48.6
Nn8g38896 Nelumbo nucifera HOM05D003151 ORTHO05D003723 4.3e-07 59.3 100 42.0
MSTRG.6051 Avicennia marina HOM05D003151 ORTHO05D003723 5.6e-07 58.9 96 41.7
CSS0011012 Camellia sinensis var. sinensis HOM05D003151 ORTHO05D003723 5.6e-07 58.9 98 43.9
CSS0013498 Camellia sinensis var. sinensis HOM05D003151 ORTHO05D003723 5.6e-07 58.9 98 43.9
ECA240G2674 Erigeron canadensis HOM05D003151 ORTHO05D003723 5.6e-07 58.9 85 43.5
FAN19G2283 Fragaria x ananassa HOM05D003151 ORTHO05D003723 5.6e-07 58.9 83 44.6
FvH4_1g07230 Fragaria vesca HOM05D003151 ORTHO05D003723 7.3e-07 58.5 83 44.6
HanXRQChr10g0319261 Helianthus annuus HOM05D003151 ORTHO05D003723 7.3e-07 58.5 86 45.3
PSO832G3392 Papaver somniferum HOM05D003151 ORTHO05D003723 7.3e-07 58.5 113 37.2
Psat7g020200 Pisum sativum HOM05D003151 ORTHO05D003723 9.5e-07 58.2 76 48.7
GSVIVG01015216001 Vitis vinifera HOM05D003151 ORTHO05D003723 9.5e-07 58.2 79 44.3
SMO367G0845 Selaginella moellendorffii HOM05D003151 ORTHO05D003723 1.2e-06 57.8 80 45.0
TPR.G25452 Trifolium pratense HOM05D003151 ORTHO05D003723 1.2e-06 57.8 99 40.4
ATR0716G029 Amborella trichopoda HOM05D003151 ORTHO05D003723 1.6e-06 57.4 112 33.9
AT4G29600 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 1.6e-06 57.4 74 47.3
Lsat_1_v5_gn_5_145481 Lactuca sativa HOM05D003151 ORTHO05D003723 1.6e-06 57.4 85 44.7
VMungo0251G0329 Vigna mungo HOM05D003151 ORTHO05D003723 1.6e-06 57.4 101 38.6
Thhalv10026995m.g Eutrema salsugineum HOM05D003151 ORTHO05D003723 2.8e-06 56.6 61 52.5
Glyma.05G222300 Glycine max HOM05D003151 ORTHO05D003723 2.8e-06 56.6 97 42.3
Peaxi162Scf00354g00026 Petunia axillaris HOM05D003151 ORTHO05D003723 2.8e-06 56.6 117 37.6
AT4G29640 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 3.6e-06 56.2 79 43.0
CAN.G771.2 Capsicum annuum HOM05D003151 ORTHO05D003723 3.6e-06 56.2 84 41.7
SGA_v2.0_scaffold62G21599 Striga asiatica HOM05D003151 ORTHO05D003723 4.7e-06 55.8 87 42.5
AL7G22780 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 6.1e-06 55.5 69 50.7
MSTRG.17772 Avicennia marina HOM05D003151 ORTHO05D003723 6.1e-06 55.5 112 36.6
TPR.G35502 Trifolium pratense HOM05D003151 ORTHO05D003723 6.1e-06 55.5 77 48.1
AL7G22720 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 8.0e-06 55.1 72 48.6


User provided reference genes

Program Settings