Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 5.2e-30 133.7 64 100.0
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.3e-28 129.0 64 96.9
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 4.7e-15 84.0 46 80.4
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 4.7e-15 84.0 46 80.4
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 4.7e-15 84.0 46 80.4
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 4.7e-15 84.0 46 80.4
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 6.2e-15 83.6 46 78.3
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 6.2e-15 83.6 46 78.3
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 6.2e-15 83.6 46 78.3
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 6.2e-15 83.6 46 78.3
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 1.0e-14 82.8 46 78.3
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 1.0e-14 82.8 46 78.3
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 1.8e-14 82.0 46 78.3
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 5.2e-14 80.5 46 76.1
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 8.9e-14 79.7 46 76.1
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 1.2e-13 79.3 46 76.1
BcaB04g18891 Brassica carinata HOM05D005978 ORTHO05D007472 5.8e-13 77.0 55 69.1
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 9.8e-13 76.3 48 68.8
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 9.8e-13 76.3 48 68.8
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 1.3e-12 75.9 48 70.8
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 1.7e-12 75.5 48 68.8
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 2.2e-12 75.1 48 72.9
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 6.4e-12 73.6 46 71.7
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 6.4e-12 73.6 46 69.6
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.1e-11 72.8 48 64.6
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 1.9e-11 72.0 48 66.7
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 1.9e-11 72.0 48 66.7
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 3.2e-11 71.2 48 64.6
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 3.2e-11 71.2 48 66.7
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 4.1e-11 70.9 46 67.4
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 5.4e-11 70.5 46 65.2
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 5.4e-11 70.5 46 65.2
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 5.4e-11 70.5 46 67.4
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 9.2e-11 69.7 48 64.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 9.2e-11 69.7 48 64.6
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 1.2e-10 69.3 48 62.5
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.2e-10 69.3 48 62.5
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 1.2e-10 69.3 48 60.4
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 1.2e-10 69.3 48 58.3
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.6e-10 68.9 46 60.9
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 1.6e-10 68.9 48 64.6
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 1.6e-10 68.9 48 60.4
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 1.6e-10 68.9 42 69.0
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 2.0e-10 68.6 48 62.5
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 2.0e-10 68.6 48 62.5
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 2.0e-10 68.6 46 60.9
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 2.7e-10 68.2 46 63.0
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 2.7e-10 68.2 46 65.2
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 2.7e-10 68.2 48 62.5
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 3.5e-10 67.8 48 62.5
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 3.5e-10 67.8 46 63.0
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 3.5e-10 67.8 48 58.3
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 4.6e-10 67.4 48 60.4
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 4.6e-10 67.4 46 65.2
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 6.0e-10 67.0 48 60.4
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 6.0e-10 67.0 48 56.2
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 6.0e-10 67.0 48 60.4
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 7.8e-10 66.6 48 60.4
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 7.8e-10 66.6 46 63.0
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 1.0e-09 66.2 48 58.3
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 1.0e-09 66.2 48 58.3
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 1.0e-09 66.2 48 58.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 1.0e-09 66.2 46 63.0
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 1.7e-09 65.5 46 63.0
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.3e-09 65.1 48 58.3
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 2.3e-09 65.1 48 56.2
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 2.3e-09 65.1 46 63.0
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 3.0e-09 64.7 46 56.5
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 3.9e-09 64.3 46 63.0
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 3.9e-09 64.3 46 60.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 5.0e-09 63.9 46 63.0
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 5.0e-09 63.9 46 63.0
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 5.0e-09 63.9 48 60.4
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 5.0e-09 63.9 48 58.3
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 8.6e-09 63.2 48 56.2
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 8.6e-09 63.2 46 63.0
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 8.6e-09 63.2 48 56.2
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 8.6e-09 63.2 48 60.4
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 8.6e-09 63.2 46 58.7
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 8.6e-09 63.2 46 58.7
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.5e-08 62.4 46 63.0
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.5e-08 62.4 46 63.0
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 2.5e-08 61.6 46 56.5
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 3.3e-08 61.2 48 56.2
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 5.6e-08 60.5 48 54.2
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 1.6e-07 58.9 46 54.3
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 1.6e-07 58.9 46 56.5
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 2.1e-07 58.5 46 54.3
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.8e-07 58.2 46 54.3
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 3.6e-07 57.8 46 54.3
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 4.7e-07 57.4 46 50.0
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 6.2e-07 57.0 46 50.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.1e-06 56.2 46 50.0
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.1e-06 56.2 46 47.8
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.1e-06 54.7 46 47.8
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.1e-06 54.7 46 47.8
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 6.8e-06 53.5 34 67.6


User provided reference genes

Program Settings