Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p24450 Brassica napus HOM05D028998 ORTHO05D027508 1.0e-122 443.4 216 100.0
BolC7t42965H Brassica oleracea HOM05D028998 ORTHO05D027508 2.3e-122 442.2 216 99.5
BraA07t29395Z Brassica rapa HOM05D028998 ORTHO05D027508 4.9e-32 142.1 68 97.1
BcaC06g34806 Brassica carinata HOM05D028998 ORTHO05D027508 1.3e-27 127.5 153 54.2
Thecc.01G062100 Theobroma cacao HOM05D003382 ORTHO05D003930 1.6e-11 73.9 80 51.2
Duzib147G0315 Durio zibethinus HOM05D003382 ORTHO05D003930 2.1e-11 73.6 80 51.2
COL.COLO4_11466 Corchorus olitorius HOM05D003382 ORTHO05D003930 2.8e-11 73.2 80 50.0
Potri.007G047500 Populus trichocarpa HOM05D003382 ORTHO05D003930 2.4e-10 70.1 88 50.0
Prupe.6G230500 Prunus persica HOM05D003382 ORTHO05D003930 3.1e-10 69.7 81 49.4
Duzib264G1059 Durio zibethinus HOM05D003382 ORTHO05D003930 4.1e-10 69.3 80 50.0
Gohir.A02G155500 Gossypium hirsutum HOM05D003382 ORTHO05D003930 4.1e-10 69.3 80 50.0
Gohir.A11G196300 Gossypium hirsutum HOM05D003382 ORTHO05D003930 4.1e-10 69.3 80 46.2
TWI73G0794 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 4.1e-10 69.3 84 50.0
Gohir.D11G202200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 5.3e-10 68.9 80 46.2
Gorai.007G216800 Gossypium raimondii HOM05D003382 ORTHO05D003930 5.3e-10 68.9 80 46.2
PGR004G0325 Punica granatum HOM05D003382 ORTHO05D003930 5.3e-10 68.9 81 51.9
Thhalv10024924m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 6.9e-10 68.6 68 57.4
Ciclev10025401m.g Citrus clementina HOM05D003382 ORTHO05D003930 9.0e-10 68.2 101 45.5
Eucgr.I00880 Eucalyptus grandis HOM05D003382 ORTHO05D003930 9.0e-10 68.2 81 49.4
Aa31LG1G15760 Aethionema arabicum HOM05D003382 ORTHO05D003930 1.2e-09 67.8 69 58.0
Glyma.16G095800 Glycine max HOM05D003382 ORTHO05D003930 1.2e-09 67.8 81 51.9
Glyma.17G168400 Glycine max HOM05D003382 ORTHO05D003930 1.2e-09 67.8 81 51.9
CANSAT25G0401 Cannabis sativa HOM05D003382 ORTHO05D003930 1.5e-09 67.4 80 55.0
Cfa004049 Carpinus fangiana HOM05D003382 ORTHO05D003930 1.5e-09 67.4 85 50.6
RcHm_v2.0_Chr2g0106411 Rosa chinensis HOM05D003382 ORTHO05D003930 1.5e-09 67.4 102 44.1
THA.LOC104807598 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 1.5e-09 67.4 42 83.3
TWI09G1091 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 1.5e-09 67.4 83 49.4
Cpa.g.sc55.103 Carica papaya HOM05D003382 ORTHO05D003930 2.0e-09 67.0 38 89.5
Dinv30023 Davidia involucrata HOM05D003382 ORTHO05D003930 2.0e-09 67.0 53 67.9
Thhalv10004084m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 2.0e-09 67.0 97 41.2
TPR.G14589 Trifolium pratense HOM05D003382 ORTHO05D003930 2.0e-09 67.0 81 54.3
CiPaw.01G014100 Carya illinoinensis HOM05D003382 ORTHO05D003930 2.6e-09 66.6 73 56.2
Ca_22129_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 2.6e-09 66.6 81 51.9
Lj7A81T14 Lonicera japonica HOM05D003382 ORTHO05D003930 3.4e-09 66.2 81 51.9
Sabra07G0042400 Salix brachista HOM05D003382 ORTHO05D003930 3.4e-09 66.2 42 81.0
Aqoxy5G01170 Aquilegia oxysepala HOM05D003382 ORTHO05D003930 4.5e-09 65.9 71 56.3
BcaNung02528 Brassica carinata HOM05D003382 ORTHO05D003930 4.5e-09 65.9 85 45.9
A07p16740 Brassica napus HOM05D003382 ORTHO05D003930 4.5e-09 65.9 38 86.8
C01p01910 Brassica napus HOM05D003382 ORTHO05D003930 4.5e-09 65.9 85 45.9
BraA07t29399Z Brassica rapa HOM05D003382 ORTHO05D003930 4.5e-09 65.9 38 86.8
CSS0022388 Camellia sinensis var. sinensis HOM05D003382 ORTHO05D003930 4.5e-09 65.9 54 70.4
Duzib187G0504 Durio zibethinus HOM05D003382 ORTHO05D003930 4.5e-09 65.9 63 60.3
Hma1.2p1_2648F.1_g326090 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 4.5e-09 65.9 51 66.7
Lj4g0013634 Lotus japonicus HOM05D003382 ORTHO05D003930 4.5e-09 65.9 81 48.1
Medtr4g094912 Medicago truncatula HOM05D003382 ORTHO05D003930 4.5e-09 65.9 73 58.9
Sp2g29440 Schrenkiella parvula HOM05D003382 ORTHO05D003930 4.5e-09 65.9 38 86.8
AT5G67230 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 5.9e-09 65.5 38 86.8
BcaB02g09942 Brassica carinata HOM05D003382 ORTHO05D003930 5.9e-09 65.5 38 86.8
Sabra05G0112900 Salix brachista HOM05D003382 ORTHO05D003930 5.9e-09 65.5 81 49.4
SHI34083 Sapria himalayana HOM05D003382 ORTHO05D003930 5.9e-09 65.5 100 43.0
BraA01t00166Z Brassica rapa HOM05D003382 ORTHO05D003930 7.6e-09 65.1 85 45.9
FvH4_1g16500 Fragaria vesca HOM05D003382 ORTHO05D003930 7.6e-09 65.1 55 65.5
FAN19G0190 Fragaria x ananassa HOM05D003382 ORTHO05D003930 7.6e-09 65.1 55 65.5
FAN23G3096 Fragaria x ananassa HOM05D003382 ORTHO05D003930 7.6e-09 65.1 55 65.5
FAN26G1389 Fragaria x ananassa HOM05D003382 ORTHO05D003930 7.6e-09 65.1 55 65.5
FAN28G1977 Fragaria x ananassa HOM05D003382 ORTHO05D003930 7.6e-09 65.1 55 65.5
FAN28G2539 Fragaria x ananassa HOM05D003382 ORTHO05D003930 7.6e-09 65.1 55 65.5
Gorai.003G026800 Gossypium raimondii HOM05D003382 ORTHO05D003930 7.6e-09 65.1 80 48.8
Lj7A75T29 Lonicera japonica HOM05D003382 ORTHO05D003930 7.6e-09 65.1 74 54.1
Lalb_Chr16g0378671 Lupinus albus HOM05D003382 ORTHO05D003930 7.6e-09 65.1 73 54.8
MD15G1287400 Malus domestica HOM05D003382 ORTHO05D003930 7.6e-09 65.1 56 64.3
QL06p040205 Quercus lobata HOM05D003382 ORTHO05D003930 7.6e-09 65.1 85 48.2
Haze_15362 Corylus avellana HOM05D003382 ORTHO05D003930 1.0e-08 64.7 85 49.4
Manes.12G107600 Manihot esculenta HOM05D003382 ORTHO05D003930 1.0e-08 64.7 56 62.5
AT4G36890 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 1.3e-08 64.3 38 84.2
arahy.Tifrunner.gnm1.ann1.27CBEW Arachis hypogaea HOM05D003382 ORTHO05D003930 1.3e-08 64.3 75 50.7
arahy.Tifrunner.gnm1.ann1.S4MMCZ Arachis hypogaea HOM05D003382 ORTHO05D003930 1.3e-08 64.3 75 50.7
BcaC06g34805 Brassica carinata HOM05D003382 ORTHO05D003930 1.3e-08 64.3 38 84.2
C07p24470 Brassica napus HOM05D003382 ORTHO05D003930 1.3e-08 64.3 38 84.2
BolC1t00183H Brassica oleracea HOM05D003382 ORTHO05D003930 1.3e-08 64.3 65 55.4
BolC7t42967H Brassica oleracea HOM05D003382 ORTHO05D003930 1.3e-08 64.3 38 84.2
Gohir.D03G025200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 1.3e-08 64.3 80 47.5
PSO170G3452 Papaver somniferum HOM05D003382 ORTHO05D003930 1.3e-08 64.3 42 78.6
Psat2g028760 Pisum sativum HOM05D003382 ORTHO05D003930 1.3e-08 64.3 42 81.0
TAR628G1387 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.3e-08 64.3 56 64.3
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 1.3e-08 64.3 73 47.9
Actinidia03805 Actinidia chinensis HOM05D003382 ORTHO05D003930 1.7e-08 63.9 51 68.6
Actinidia16465 Actinidia chinensis HOM05D003382 ORTHO05D003930 1.7e-08 63.9 67 56.7
Manes.13G119600 Manihot esculenta HOM05D003382 ORTHO05D003930 1.7e-08 63.9 56 62.5
Nitab4.5_0002465g0060 Nicotiana tabacum HOM05D003382 ORTHO05D003930 1.7e-08 63.9 40 77.5
Sp7g34880 Schrenkiella parvula HOM05D003382 ORTHO05D003930 1.7e-08 63.9 73 47.9
TAR381G0691 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.7e-08 63.9 56 64.3
Dinv26854 Davidia involucrata HOM05D003382 ORTHO05D003930 2.2e-08 63.5 38 84.2
Lalb_Chr05g0213401 Lupinus albus HOM05D003382 ORTHO05D003930 2.2e-08 63.5 73 53.4
Lalb_Chr09g0323331 Lupinus albus HOM05D003382 ORTHO05D003930 2.2e-08 63.5 73 53.4
Nitab4.5_0002214g0040 Nicotiana tabacum HOM05D003382 ORTHO05D003930 2.2e-08 63.5 39 79.5
PSO210G2217 Papaver somniferum HOM05D003382 ORTHO05D003930 2.2e-08 63.5 42 76.2
PSO541G0593 Papaver somniferum HOM05D003382 ORTHO05D003930 2.2e-08 63.5 38 81.6
PGSC0003DMG400013327 Solanum tuberosum HOM05D003382 ORTHO05D003930 2.2e-08 63.5 39 79.5
Carub.0007s0306 Capsella rubella HOM05D003382 ORTHO05D003930 2.9e-08 63.2 65 56.9
CAN.G222.166 Capsicum annuum HOM05D003382 ORTHO05D003930 2.9e-08 63.2 39 79.5
HanXRQChr14g0460431 Helianthus annuus HOM05D003382 ORTHO05D003930 2.9e-08 63.2 60 61.7
MD02G1177600 Malus domestica HOM05D003382 ORTHO05D003930 2.9e-08 63.2 56 62.5
PSO675G2844 Papaver somniferum HOM05D003382 ORTHO05D003930 2.9e-08 63.2 38 81.6
THA.LOC104827351 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 2.9e-08 63.2 38 81.6
AL7G13650 Arabidopsis lyrata HOM05D003382 ORTHO05D003930 3.8e-08 62.8 38 81.6
A01p01740 Brassica napus HOM05D003382 ORTHO05D003930 3.8e-08 62.8 38 78.9
CiPaw.02G007100 Carya illinoinensis HOM05D003382 ORTHO05D003930 3.8e-08 62.8 73 54.8
Potri.005G141500 Populus trichocarpa HOM05D003382 ORTHO05D003930 3.8e-08 62.8 38 81.6
Solyc11g011850.2 Solanum lycopersicum HOM05D003382 ORTHO05D003930 3.8e-08 62.8 39 79.5
Sopen11g006680 Solanum pennellii HOM05D003382 ORTHO05D003930 3.8e-08 62.8 39 79.5
HanXRQChr15g0491931 Helianthus annuus HOM05D003382 ORTHO05D003930 5.0e-08 62.4 60 61.7
THA.LOC104819856 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 5.0e-08 62.4 38 81.6
Atru.chr3.266 Acer truncatum HOM05D003382 ORTHO05D003930 6.5e-08 62.0 51 60.8
CARHR245620 Cardamine hirsuta HOM05D003382 ORTHO05D003930 6.5e-08 62.0 38 76.3
TAR376G0471 Trochodendron aralioides HOM05D003382 ORTHO05D003930 6.5e-08 62.0 56 58.9
Aa31LG6G14090 Aethionema arabicum HOM05D003382 ORTHO05D003930 8.5e-08 61.6 42 71.4
Ca_24746_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 8.5e-08 61.6 38 78.9
ECA238G0958 Erigeron canadensis HOM05D003382 ORTHO05D003930 8.5e-08 61.6 42 76.2
SGA_v2.0_scaffold143G35795 Striga asiatica HOM05D003382 ORTHO05D003930 8.5e-08 61.6 52 61.5
vmacro05261 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 8.5e-08 61.6 70 52.9
GSVIVG01022064001 Vitis vinifera HOM05D003382 ORTHO05D003930 8.5e-08 61.6 38 81.6
MELO3C007577.2 Cucumis melo HOM05D003382 ORTHO05D003930 1.1e-07 61.2 81 46.9
Lsat_1_v5_gn_4_164401 Lactuca sativa HOM05D003382 ORTHO05D003930 1.1e-07 61.2 38 78.9
Lj4A155G86 Lonicera japonica HOM05D003382 ORTHO05D003930 1.1e-07 61.2 38 81.6
SEGI_35989 Sequoiadendron giganteum HOM05D003382 ORTHO05D003930 1.1e-07 61.2 42 76.2
CARHR280400 Cardamine hirsuta HOM05D003382 ORTHO05D003930 1.4e-07 60.8 38 78.9
Glyma.01G189200 Glycine max HOM05D003382 ORTHO05D003930 1.4e-07 60.8 61 57.4
Gorai.004G051000 Gossypium raimondii HOM05D003382 ORTHO05D003930 1.4e-07 60.8 80 41.2
HanXRQChr01g0030391 Helianthus annuus HOM05D003382 ORTHO05D003930 1.4e-07 60.8 80 47.5
Lsat_1_v5_gn_2_85701 Lactuca sativa HOM05D003382 ORTHO05D003930 1.4e-07 60.8 64 56.2
Lj2g0012816 Lotus japonicus HOM05D003382 ORTHO05D003930 1.4e-07 60.8 38 78.9
Medtr5g016600 Medicago truncatula HOM05D003382 ORTHO05D003930 1.4e-07 60.8 38 78.9
Oeu013240.1 Olea europaea HOM05D003382 ORTHO05D003930 1.4e-07 60.8 38 78.9
Psat0s1867g0120 Pisum sativum HOM05D003382 ORTHO05D003930 1.4e-07 60.8 38 78.9
CsaV3_6G043470 Cucumis sativus L. HOM05D003382 ORTHO05D003930 1.9e-07 60.5 81 46.9
ECA232G1178 Erigeron canadensis HOM05D003382 ORTHO05D003930 1.9e-07 60.5 60 60.0
Hma1.2p1_0017F.1_g011810 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 1.9e-07 60.5 38 78.9
Carub.0008s2728 Capsella rubella HOM05D003382 ORTHO05D003930 2.5e-07 60.1 38 81.6
Cc07_g06350 Coffea canephora HOM05D003382 ORTHO05D003930 2.5e-07 60.1 81 45.7
Migut.L00178 Erythranthe guttata HOM05D003382 ORTHO05D003930 3.2e-07 59.7 44 70.5
Phvul.002G016000 Phaseolus vulgaris HOM05D003382 ORTHO05D003930 3.2e-07 59.7 38 76.3
VMungo1215G2685 Vigna mungo HOM05D003382 ORTHO05D003930 3.2e-07 59.7 38 76.3
ATR0762G014 Amborella trichopoda HOM05D003382 ORTHO05D003930 4.2e-07 59.3 38 76.3
ClCG01G016990 Citrullus lanatus HOM05D003382 ORTHO05D003930 4.2e-07 59.3 81 45.7
Rhsim08G0098200 Rhododendron simsii HOM05D003382 ORTHO05D003930 4.2e-07 59.3 42 76.2
Rhsim10G0113400 Rhododendron simsii HOM05D003382 ORTHO05D003930 4.2e-07 59.3 63 50.8
TPR.G26871 Trifolium pratense HOM05D003382 ORTHO05D003930 4.2e-07 59.3 38 73.7
Glyma.11G053000 Glycine max HOM05D003382 ORTHO05D003930 5.5e-07 58.9 61 55.7
Oeu009828.1 Olea europaea HOM05D003382 ORTHO05D003930 5.5e-07 58.9 44 65.9
vmacro17969 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 5.5e-07 58.9 54 64.8
Oeu014792.2 Olea europaea HOM05D003382 ORTHO05D003930 7.2e-07 58.5 92 43.5
Sc03g0001810 Simmondsia chinensis HOM05D003382 ORTHO05D003930 7.2e-07 58.5 58 53.4
VMungo0251G2741 Vigna mungo HOM05D003382 ORTHO05D003930 7.2e-07 58.5 71 52.1
Migut.H00405 Erythranthe guttata HOM05D003382 ORTHO05D003930 9.3e-07 58.2 38 71.1
Sed0001836 Sechium edule HOM05D003382 ORTHO05D003930 9.3e-07 58.2 53 58.5
Sed0013280 Sechium edule HOM05D003382 ORTHO05D003930 9.3e-07 58.2 53 58.5
Sc07g0000690 Simmondsia chinensis HOM05D003382 ORTHO05D003930 9.3e-07 58.2 57 54.4
MSTRG.3440 Avicennia marina HOM05D003382 ORTHO05D003930 1.2e-06 57.8 38 73.7
DCAR_025752 Daucus carota HOM05D003382 ORTHO05D003930 1.2e-06 57.8 54 63.0
Hund16361 Selenicereus undatus HOM05D003382 ORTHO05D003930 1.2e-06 57.8 145 31.7
C03p79540 Brassica napus HOM05D003382 ORTHO05D003930 2.7e-06 56.6 54 53.7
CDE01G0400 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 2.7e-06 56.6 38 76.3
CDE02G3038 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 2.7e-06 56.6 38 76.3
SMO172G0036 Selaginella moellendorffii HOM05D003382 ORTHO05D003930 3.6e-06 56.2 38 71.1
Eucgr.H02219 Eucalyptus grandis HOM05D003382 ORTHO05D003930 4.6e-06 55.8 38 71.1
unitig_21.g20471 Utricularia gibba HOM05D003382 ORTHO05D003930 4.6e-06 55.8 38 68.4
Zm00001eb273460 Zea mays HOM05D003382 ORTHO05D003930 4.6e-06 55.8 38 63.2
TAR625G0350 Trochodendron aralioides HOM05D003382 ORTHO05D003930 6.1e-06 55.5 38 68.4
Migut.C00421 Erythranthe guttata HOM05D003382 ORTHO05D003930 7.9e-06 55.1 45 66.7
SGA_v2.0_scaffold15G07357 Striga asiatica HOM05D003382 ORTHO05D003930 7.9e-06 55.1 46 60.9
unitig_744.g24374 Utricularia gibba HOM05D003382 ORTHO05D003930 7.9e-06 55.1 38 65.8


User provided reference genes

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