Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p17100 Brassica napus HOM05D022214 ORTHO05D024595 3.3e-56 221.5 110 100.0
BolC7t42216H Brassica oleracea HOM05D022214 ORTHO05D024595 6.1e-55 217.2 110 98.2
BolC7t43744H Brassica oleracea HOM05D022214 ORTHO05D024595 2.6e-53 211.8 110 96.4
C02p36580 Brassica napus HOM05D022214 ORTHO05D024595 3.4e-53 211.5 110 96.4
BraA01t03573Z Brassica rapa HOM05D022214 ORTHO05D024595 1.2e-29 133.3 79 83.5
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-08 63.5 27 96.3
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 1.1e-08 63.5 27 96.3
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 4.3e-08 61.6 27 92.6
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 4.3e-08 61.6 27 88.9
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 5.6e-08 61.2 27 92.6
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 5.6e-08 61.2 27 92.6
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 5.6e-08 61.2 27 92.6
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 5.6e-08 61.2 27 92.6
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.3e-07 60.1 27 81.5
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.6e-07 59.7 27 85.2
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.6e-07 59.7 27 85.2
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.1e-07 59.3 27 85.2
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.1e-07 59.3 27 85.2
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.1e-07 59.3 27 81.5
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 2.8e-07 58.9 27 81.5
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 2.8e-07 58.9 27 77.8
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 2.8e-07 58.9 27 77.8
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 3.6e-07 58.5 27 77.8
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 3.6e-07 58.5 27 77.8
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 3.6e-07 58.5 26 84.6
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 3.6e-07 58.5 26 84.6
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 3.6e-07 58.5 27 81.5
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 4.8e-07 58.2 33 72.7
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 4.8e-07 58.2 33 72.7
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 4.8e-07 58.2 27 77.8
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 6.2e-07 57.8 27 77.8
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 6.2e-07 57.8 27 74.1
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 8.1e-07 57.4 27 77.8
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 8.1e-07 57.4 27 77.8
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 8.1e-07 57.4 27 77.8
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 8.1e-07 57.4 27 74.1
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 8.1e-07 57.4 33 72.7
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 8.1e-07 57.4 33 72.7
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 8.1e-07 57.4 33 72.7
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 8.1e-07 57.4 33 72.7
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 8.1e-07 57.4 27 77.8
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 8.1e-07 57.4 74 43.2
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.1e-06 57.0 27 77.8
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.1e-06 57.0 27 77.8
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.1e-06 57.0 33 72.7
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 1.4e-06 56.6 33 72.7
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 1.4e-06 56.6 27 77.8
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.8e-06 56.2 27 74.1
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 1.8e-06 56.2 33 72.7
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.8e-06 56.2 27 77.8
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.8e-06 56.2 59 49.2
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 2.4e-06 55.8 32 75.0
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 2.4e-06 55.8 27 74.1
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.4e-06 55.8 53 52.8
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.4e-06 55.8 59 47.5
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 3.1e-06 55.5 27 74.1
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 3.1e-06 55.5 26 80.8
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 3.1e-06 55.5 26 76.9
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.1e-06 55.5 53 52.8
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 3.1e-06 55.5 27 74.1
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 4.0e-06 55.1 58 48.3
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 6.9e-06 54.3 54 44.4
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 6.9e-06 54.3 25 76.0
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 6.9e-06 54.3 59 47.5
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 9.0e-06 53.9 26 76.9
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 9.0e-06 53.9 24 83.3
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 9.0e-06 53.9 32 71.9
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 9.0e-06 53.9 51 47.1


User provided reference genes

Program Settings