Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p09300 Brassica napus HOM05D040206 ORTHO05D032799 5.8e-98 360.9 187 100.0
BolC7t41348H Brassica oleracea HOM05D040206 ORTHO05D032799 8.2e-68 260.8 187 78.1
BcaC06g35372 Brassica carinata HOM05D040206 ORTHO05D032799 1.2e-37 160.6 114 75.4
BcaC03g15084 Brassica carinata HOM05D000944 ORTHO05D001661 3.5e-10 69.3 92 53.3
A02p15910 Brassica napus HOM05D000944 ORTHO05D001661 3.5e-10 69.3 92 53.3
C02p26380 Brassica napus HOM05D000944 ORTHO05D001661 3.5e-10 69.3 92 53.3
BolC2t08712H Brassica oleracea HOM05D000944 ORTHO05D001661 3.5e-10 69.3 92 53.3
BraA02t06650Z Brassica rapa HOM05D000944 ORTHO05D001661 3.5e-10 69.3 92 53.3
BcaB05g24455 Brassica carinata HOM05D000944 ORTHO05D001661 6.0e-10 68.6 92 52.2
Thhalv10019111m.g Eutrema salsugineum HOM05D000944 ORTHO05D001661 1.3e-09 67.4 92 52.2
Sp5g24520 Schrenkiella parvula HOM05D000944 ORTHO05D001661 3.0e-09 66.2 92 51.1
Prupe.1G279400 Prunus persica HOM05D000944 ORTHO05D001661 3.9e-09 65.9 92 48.9
RcHm_v2.0_Chr4g0439151 Rosa chinensis HOM05D000944 ORTHO05D001661 2.5e-08 63.2 92 47.8
Rhsim12G0133000 Rhododendron simsii HOM05D000944 ORTHO05D001661 3.3e-08 62.8 92 47.8
Aa31LG7G8420 Aethionema arabicum HOM05D000944 ORTHO05D001661 4.3e-08 62.4 92 48.9
AL1G39050 Arabidopsis lyrata HOM05D000944 ORTHO05D001661 5.6e-08 62.0 92 46.7
FvH4_4g30751 Fragaria vesca HOM05D000944 ORTHO05D001661 5.6e-08 62.0 92 46.7
FAN07G1147 Fragaria x ananassa HOM05D000944 ORTHO05D003581 5.6e-08 62.0 92 46.7
FAN12G3169 Fragaria x ananassa HOM05D000944 ORTHO05D003581 5.6e-08 62.0 92 46.7
Carub.0001s2435 Capsella rubella HOM05D000944 ORTHO05D001661 9.6e-08 61.2 92 46.7
Manes.05G106000 Manihot esculenta HOM05D000944 ORTHO05D001661 9.6e-08 61.2 92 45.7
Sed0023648 Sechium edule HOM05D000944 ORTHO05D001661 9.6e-08 61.2 94 44.7
THA.LOC104822906 Tarenaya hassleriana HOM05D000944 ORTHO05D001661 9.6e-08 61.2 92 47.8
GSVIVG01012494001 Vitis vinifera HOM05D000944 ORTHO05D001661 9.6e-08 61.2 96 46.9
Actinidia33223 Actinidia chinensis HOM05D000944 ORTHO05D001661 1.2e-07 60.8 90 46.7
AT1G26670 Arabidopsis thaliana HOM05D000944 ORTHO05D001661 1.2e-07 60.8 92 46.7
ClCG07G003550 Citrullus lanatus HOM05D000944 ORTHO05D001661 1.2e-07 60.8 98 44.9
Potri.008G091000 Populus trichocarpa HOM05D000944 ORTHO05D001661 1.2e-07 60.8 80 48.8
MD13G1068500 Malus domestica HOM05D000944 ORTHO05D001661 2.1e-07 60.1 91 45.1
Manes.01G032900 Manihot esculenta HOM05D000944 ORTHO05D001661 2.1e-07 60.1 105 45.7
vmacro16351 Vaccinium macrocarpon HOM05D000944 ORTHO05D001661 2.1e-07 60.1 76 53.9
CiPaw.06G088400 Carya illinoinensis HOM05D000944 ORTHO05D001661 2.8e-07 59.7 92 44.6
BcaC07g37331 Brassica carinata HOM05D000313 ORTHO05D000065 3.6e-07 59.3 50 56.0
C08p07700 Brassica napus HOM05D000313 ORTHO05D000065 3.6e-07 59.3 50 56.0
BolC8t47617H Brassica oleracea HOM05D000313 ORTHO05D000065 3.6e-07 59.3 50 56.0
arahy.Tifrunner.gnm1.ann1.T4811Q Arachis hypogaea HOM05D000944 ORTHO05D001661 4.7e-07 58.9 92 47.8
arahy.Tifrunner.gnm1.ann1.ZHVZ7A Arachis hypogaea HOM05D000944 ORTHO05D001661 4.7e-07 58.9 92 47.8
MELO3C023882.2 Cucumis melo HOM05D000944 ORTHO05D001661 4.7e-07 58.9 94 44.7
MD16G1067300 Malus domestica HOM05D000944 ORTHO05D001661 4.7e-07 58.9 90 45.6
CSS0037762 Camellia sinensis var. sinensis HOM05D000944 ORTHO05D001661 6.2e-07 58.5 92 45.7
CSS0042754 Camellia sinensis var. sinensis HOM05D000944 ORTHO05D001661 6.2e-07 58.5 92 45.7
CSS0046310 Camellia sinensis var. sinensis HOM05D000944 ORTHO05D001661 6.2e-07 58.5 92 45.7
Cpa.g.sc1.64 Carica papaya HOM05D000944 ORTHO05D001661 6.2e-07 58.5 92 45.7
CsaV3_5G008320 Cucumis sativus L. HOM05D000944 ORTHO05D001661 6.2e-07 58.5 94 44.7
Thhalv10008719m.g Eutrema salsugineum HOM05D000944 ORTHO05D001661 6.2e-07 58.5 92 45.7
Peaxi162Scf00274g00346 Petunia axillaris HOM05D000944 ORTHO05D001661 6.2e-07 58.5 92 45.7
Potri.010G164300 Populus trichocarpa HOM05D000944 ORTHO05D001661 8.1e-07 58.2 80 47.5
QL03p069708 Quercus lobata HOM05D000944 ORTHO05D001661 8.1e-07 58.2 92 44.6
Sabra10G0124700 Salix brachista HOM05D000944 ORTHO05D003581 8.1e-07 58.2 80 46.2
Cfa008931 Carpinus fangiana HOM05D000944 ORTHO05D001661 1.1e-06 57.8 92 42.4
Hma1.2p1_0354F.1_g133810 Hydrangea macrophylla HOM05D000944 ORTHO05D001661 1.8e-06 57.0 91 44.0
CARHR025290 Cardamine hirsuta HOM05D000944 ORTHO05D001661 2.4e-06 56.6 92 44.6
Solyc03g115760.3 Solanum lycopersicum HOM05D000944 ORTHO05D001661 2.4e-06 56.6 80 47.5
Sopen03g034740 Solanum pennellii HOM05D000944 ORTHO05D001661 2.4e-06 56.6 80 47.5
Actinidia04869 Actinidia chinensis HOM05D000944 ORTHO05D001661 3.1e-06 56.2 85 45.9
AUR62032837 Chenopodium quinoa HOM05D000944 ORTHO05D001661 3.1e-06 56.2 82 47.6
HPP92_006479 Vanilla planifolia HOM05D000944 ORTHO05D001661 3.1e-06 56.2 92 44.6
Haze_11960 Corylus avellana HOM05D000944 ORTHO05D001661 4.0e-06 55.8 92 42.4
Duzib268G0325 Durio zibethinus HOM05D000944 ORTHO05D001661 4.0e-06 55.8 96 42.7
Zm00001eb155310 Zea mays HOM05D000944 ORTHO05D001661 4.0e-06 55.8 106 40.6
Zm00001eb361180 Zea mays HOM05D000944 ORTHO05D001661 4.0e-06 55.8 106 40.6
C02p38590 Brassica napus HOM05D000313 ORTHO05D000065 5.2e-06 55.5 55 49.1
CAN.G479.62 Capsicum annuum HOM05D000944 ORTHO05D001661 5.2e-06 55.5 71 52.1
LjContig00102g0021759 Lotus japonicus HOM05D000944 ORTHO05D001661 5.2e-06 55.5 92 43.5
PGSC0003DMG400019502 Solanum tuberosum HOM05D000944 ORTHO05D001661 5.2e-06 55.5 71 52.1
ATR0807G184 Amborella trichopoda HOM05D000944 ORTHO05D001661 6.8e-06 55.1 92 43.5
BcaB03g14083 Brassica carinata HOM05D000944 ORTHO05D001661 6.8e-06 55.1 92 43.5
BolC2t09876H Brassica oleracea HOM05D000313 ORTHO05D000065 6.8e-06 55.1 47 53.2
CAN.G964.29 Capsicum annuum HOM05D000944 ORTHO05D001661 6.8e-06 55.1 103 41.7
Thhalv10002234m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 6.8e-06 55.1 74 41.9
HanXRQChr15g0487751 Helianthus annuus HOM05D000944 ORTHO05D001661 6.8e-06 55.1 92 43.5
Nitab4.5_0001211g0220 Nicotiana tabacum HOM05D000944 ORTHO05D001661 6.8e-06 55.1 92 43.5
PSO017G2982 Papaver somniferum HOM05D000944 ORTHO05D001661 6.8e-06 55.1 70 51.4
BcaC03g15710 Brassica carinata HOM05D000313 ORTHO05D000065 8.9e-06 54.7 49 49.0
BcaC06g35130 Brassica carinata HOM05D000944 ORTHO05D001661 8.9e-06 54.7 92 43.5
A07p13040 Brassica napus HOM05D000944 ORTHO05D001661 8.9e-06 54.7 92 43.5
C07p19490 Brassica napus HOM05D000944 ORTHO05D001661 8.9e-06 54.7 92 43.5
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 8.9e-06 54.7 92 43.5
AUR62005845 Chenopodium quinoa HOM05D000944 ORTHO05D001661 8.9e-06 54.7 82 46.3
Cc04_g14980 Coffea canephora HOM05D000944 ORTHO05D001661 8.9e-06 54.7 92 43.5
Eucgr.B00538 Eucalyptus grandis HOM05D000944 ORTHO05D001661 8.9e-06 54.7 70 52.9
Rhsim08G0071700 Rhododendron simsii HOM05D000944 ORTHO05D001661 8.9e-06 54.7 70 51.4
Sc10g0003410 Simmondsia chinensis HOM05D000944 ORTHO05D001661 8.9e-06 54.7 91 44.0


User provided reference genes

Program Settings