Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p07770 Brassica napus HOM05D003620 ORTHO05D004261 1.8e-81 305.8 153 100.0
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 3.1e-73 278.5 149 95.3
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 4.7e-69 264.6 153 88.9
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 6.1e-61 237.7 149 81.9
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 6.1e-61 237.7 149 81.9
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 8.0e-61 237.3 149 81.2
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 8.0e-61 237.3 149 81.2
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 8.0e-61 237.3 149 81.2
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 5.2e-60 234.6 149 81.9
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 8.8e-60 233.8 149 80.5
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.3e-58 229.9 149 79.2
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.1e-57 226.9 149 78.5
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 2.4e-57 225.7 149 79.2
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 4.1e-57 224.9 149 77.2
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.5e-55 217.6 150 76.7
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 1.9e-54 216.1 115 93.9
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 7.2e-54 214.2 149 75.2
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 7.2e-54 214.2 149 74.5
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 1.2e-53 213.4 149 74.5
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 1.2e-53 213.4 149 74.5
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 1.2e-53 213.4 149 74.5
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 1.6e-53 213.0 149 71.8
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 2.1e-53 212.6 149 74.5
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 2.7e-53 212.2 153 75.2
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 2.7e-53 212.2 149 73.8
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 4.7e-53 211.5 149 73.2
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 4.7e-53 211.5 149 73.2
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 4.7e-53 211.5 149 73.2
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 6.1e-53 211.1 149 71.1
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 1.4e-52 209.9 149 72.5
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 2.3e-52 209.1 149 69.8
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 8.8e-52 207.2 149 72.5
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 8.8e-52 207.2 149 69.8
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 5.7e-51 204.5 149 69.8
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 1.8e-49 199.5 149 64.4
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 2.4e-49 199.1 149 66.4
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.1e-49 198.7 149 67.8
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 3.1e-49 198.7 149 64.4
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 4.1e-49 198.4 149 65.8
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 4.1e-49 198.4 149 64.4
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 5.4e-49 198.0 149 67.1
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 1.2e-48 196.8 149 67.1
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.6e-48 196.4 149 65.1
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 1.6e-48 196.4 149 65.1
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 1.6e-48 196.4 149 65.1
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 2.7e-48 195.7 149 66.4
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 3.5e-48 195.3 149 63.1
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 5.9e-48 194.5 149 67.1
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.9e-48 194.5 149 63.1
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 5.9e-48 194.5 149 63.1
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 5.9e-48 194.5 149 65.8
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 1.0e-47 193.7 149 65.8
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 1.3e-47 193.4 149 66.4
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.7e-47 193.0 149 62.4
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.7e-47 193.0 149 62.4
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 2.9e-47 192.2 149 65.1
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 2.9e-47 192.2 149 67.1
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 2.9e-47 192.2 149 65.1
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.8e-47 191.8 149 62.4
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 5.0e-47 191.4 149 66.4
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 5.0e-47 191.4 149 64.4
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 5.0e-47 191.4 149 64.4
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 6.5e-47 191.0 149 65.1
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 8.5e-47 190.7 149 65.1
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.9e-46 189.5 149 65.8
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 4.2e-46 188.3 149 61.7
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 5.5e-46 188.0 149 63.8
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 9.4e-46 187.2 151 62.9
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 9.4e-46 187.2 149 65.1
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 1.6e-45 186.4 149 61.1
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 1.6e-45 186.4 149 61.7
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 2.1e-45 186.0 149 61.7
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 2.1e-45 186.0 150 60.7
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 2.7e-45 185.7 149 61.1
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 2.7e-45 185.7 149 63.8
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 2.7e-45 185.7 149 61.7
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 2.7e-45 185.7 149 60.4
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 3.6e-45 185.3 149 61.7
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 4.7e-45 184.9 149 60.4
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 4.7e-45 184.9 149 62.4
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 4.7e-45 184.9 149 64.4
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 4.7e-45 184.9 149 64.4
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 6.1e-45 184.5 149 62.4
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 8.0e-45 184.1 149 59.7
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 1.0e-44 183.7 149 62.4
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 1.0e-44 183.7 149 61.1
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 1.0e-44 183.7 149 61.1
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 1.4e-44 183.3 149 60.4
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 6.8e-44 181.0 147 60.5
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 6.8e-44 181.0 149 59.7
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 8.8e-44 180.6 149 60.4
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 8.8e-44 180.6 149 59.1
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 1.2e-43 180.3 149 59.7
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 1.5e-43 179.9 149 61.1
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 2.0e-43 179.5 149 59.1
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 3.4e-43 178.7 149 60.4
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 3.4e-43 178.7 149 59.1
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 4.4e-43 178.3 154 62.3
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 5.7e-43 177.9 149 58.4
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 9.8e-43 177.2 171 55.0
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 1.7e-42 176.4 149 61.1
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 2.8e-42 175.6 149 59.1
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 3.1e-41 172.2 149 57.7
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 7.0e-41 171.0 149 57.0
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 9.2e-41 170.6 149 57.7
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 2.7e-40 169.1 149 58.4
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 2.3e-39 166.0 149 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 2.5e-38 162.5 149 55.7
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 1.2e-37 160.2 149 55.0
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.6e-37 159.8 149 55.7
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 1.4e-36 156.8 165 50.3
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 4.0e-36 155.2 149 51.7
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 8.9e-36 154.1 149 51.7
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 4.9e-34 148.3 115 66.1
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 8.3e-34 147.5 117 64.1
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 1.8e-33 146.4 113 61.9
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 5.4e-33 144.8 112 62.5
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 2.7e-32 142.5 149 50.3
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 3.5e-32 142.1 134 56.7
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 5.9e-32 141.4 155 52.3
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 5.9e-32 141.4 113 62.8
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 5.0e-31 138.3 117 58.1
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 6.6e-31 137.9 138 52.9
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 6.6e-31 137.9 113 61.9
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 1.9e-30 136.3 65 100.0
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 1.5e-27 126.7 98 66.3
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 4.4e-27 125.2 81 71.6
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 2.4e-25 119.4 158 48.7
CsaV3_3G020620 Cucumis sativus L. HOM05D003620 ORTHO05D004261 3.2e-17 92.4 149 38.3
C07p07760 Brassica napus HOM05D003620 ORTHO05D004261 5.4e-17 91.7 73 68.5
Hund22189 Selenicereus undatus HOM05D003620 ORTHO05D004261 4.3e-14 82.0 49 73.5
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 6.8e-12 74.7 83 48.2
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.2e-11 73.9 108 41.7
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 1.5e-06 57.0 39 69.2


User provided reference genes

Program Settings