Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p07750 Brassica napus HOM05D003620 ORTHO05D004261 4.6e-15 83.2 37 100.0
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 4.6e-15 83.2 37 100.0
C09p20230 Brassica napus HOM05D003620 ORTHO05D004261 8.8e-14 79.0 37 97.3
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 5.3e-11 69.7 37 86.5
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 6.9e-11 69.3 37 86.5
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 1.5e-10 68.2 37 83.8
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 1.5e-10 68.2 37 83.8
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 1.5e-10 68.2 37 83.8
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 1.5e-10 68.2 37 83.8
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.5e-10 68.2 37 83.8
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 2.6e-10 67.4 37 83.8
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 4.5e-10 66.6 37 81.1
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 2.9e-09 63.9 37 75.7
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 2.9e-09 63.9 37 75.7
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 2.9e-09 63.9 37 78.4
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 2.9e-09 63.9 37 75.7
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 75.7
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 75.7
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 75.7
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 75.7
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 73.0
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 75.7
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.8e-09 63.5 37 75.7
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 5.0e-09 63.2 37 75.7
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 5.0e-09 63.2 37 75.7
GSVIVG01029733001 Vitis vinifera HOM05D003620 ORTHO05D004261 5.0e-09 63.2 37 73.0
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 6.5e-09 62.8 37 75.7
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 6.5e-09 62.8 37 73.0
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 73.0
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 73.0
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 73.0
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 73.0
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 73.0
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 70.3
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 8.5e-09 62.4 37 73.0
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 1.1e-08 62.0 37 73.0
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 1.1e-08 62.0 37 73.0
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 1.1e-08 62.0 37 70.3
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.1e-08 62.0 37 73.0
Zm00001eb011090 Zea mays HOM05D003620 ORTHO05D004261 1.1e-08 62.0 37 73.0
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 1.1e-08 62.0 37 73.0
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 1.4e-08 61.6 37 70.3
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 67.6
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 70.3
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 70.3
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 73.0
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 73.0
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 73.0
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 1.9e-08 61.2 37 70.3
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 2.5e-08 60.8 37 70.3
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 3.2e-08 60.5 37 70.3
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 3.2e-08 60.5 37 73.0
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 3.2e-08 60.5 37 64.9
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 3.2e-08 60.5 37 70.3
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 3.2e-08 60.5 37 67.6
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 3.2e-08 60.5 37 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 4.2e-08 60.1 37 70.3
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 4.2e-08 60.1 37 67.6
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 4.2e-08 60.1 37 67.6
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 4.2e-08 60.1 37 67.6
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 4.2e-08 60.1 37 67.6
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 4.2e-08 60.1 37 67.6
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 5.5e-08 59.7 37 67.6
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 5.5e-08 59.7 36 72.2
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 7.2e-08 59.3 36 69.4
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 7.2e-08 59.3 37 73.0
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 7.2e-08 59.3 37 73.0
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 7.2e-08 59.3 36 66.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 7.2e-08 59.3 36 69.4
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 7.2e-08 59.3 37 70.3
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 7.2e-08 59.3 37 70.3
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 7.2e-08 59.3 37 70.3
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 9.4e-08 58.9 37 67.6
Zm00001eb141090 Zea mays HOM05D003620 ORTHO05D004261 9.4e-08 58.9 37 70.3
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 1.2e-07 58.5 37 67.6
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 1.2e-07 58.5 37 70.3
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 1.2e-07 58.5 37 64.9
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 1.2e-07 58.5 37 67.6
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 1.6e-07 58.2 37 67.6
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 1.6e-07 58.2 37 62.2
SGA_v2.0_scaffold83G26271 Striga asiatica HOM05D003620 ORTHO05D004261 1.6e-07 58.2 37 67.6
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 2.1e-07 57.8 36 72.2
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 2.1e-07 57.8 37 62.2
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 2.7e-07 57.4 37 64.9
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 2.7e-07 57.4 37 67.6
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 3.6e-07 57.0 36 66.7
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 3.6e-07 57.0 37 64.9
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 3.6e-07 57.0 37 70.3
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 4.7e-07 56.6 37 64.9
Glyma.03G071101 Glycine max HOM05D003620 ORTHO05D004261 4.7e-07 56.6 37 64.9
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 4.7e-07 56.6 37 64.9
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 4.7e-07 56.6 37 64.9
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 4.7e-07 56.6 36 66.7
Oeu047369.1 Olea europaea HOM05D003620 ORTHO05D004261 4.7e-07 56.6 36 66.7
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 4.7e-07 56.6 37 64.9
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 4.7e-07 56.6 37 64.9
SalBow5G0451 Salvia bowleyana HOM05D003620 ORTHO05D004261 6.1e-07 56.2 37 64.9
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 6.1e-07 56.2 37 64.9
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 6.1e-07 56.2 37 64.9
Cc02_g21930 Coffea canephora HOM05D003620 ORTHO05D004261 7.9e-07 55.8 37 62.2
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 3.0e-06 53.9 36 61.1
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 3.0e-06 53.9 37 62.2


User provided reference genes

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