Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.7e-310 1068.5 559 100.0
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 8.5e-262 906.7 581 86.4
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.2e-260 902.9 566 88.3
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.2e-260 902.9 565 88.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 4.0e-259 897.9 574 86.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 4.0e-259 897.9 574 86.6
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 4.7e-244 847.8 615 78.4
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 9.5e-237 823.5 611 77.3
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 2.1e-220 769.2 601 75.0
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 5.4e-216 754.6 589 75.6
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 3.0e-214 748.8 602 73.8
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.7e-207 725.7 598 72.2
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.3e-156 557.4 618 56.8
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 4.8e-148 528.9 636 53.5
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 3.4e-133 479.6 390 65.4
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.7e-132 477.2 580 54.0
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.8e-132 476.5 576 54.2
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.8e-132 476.5 579 54.1
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.6e-130 470.7 581 52.7
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 2.0e-130 470.3 587 53.2
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 7.8e-130 468.4 587 52.5
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.3e-129 467.6 633 50.2
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 3.9e-129 466.1 369 67.2
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 5.0e-129 465.7 421 62.9
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 5.0e-129 465.7 348 71.8
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 5.0e-129 465.7 360 68.6
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 8.6e-129 464.9 416 61.5
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 8.6e-129 464.9 603 52.6
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.5e-128 464.2 398 65.1
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.5e-128 464.2 359 68.5
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.5e-128 463.4 614 50.2
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 9.5e-128 461.5 582 49.7
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 1.2e-127 461.1 377 67.9
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 2.1e-127 460.3 358 69.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.1e-127 460.3 356 69.4
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.8e-127 459.9 453 60.0
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.1e-127 458.8 341 71.0
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 6.1e-127 458.8 407 61.9
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.0e-126 458.0 446 61.9
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.0e-126 458.0 483 57.6
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 3.1e-126 456.4 585 50.3
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 3.1e-126 456.4 549 52.1
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 8.9e-126 454.9 637 47.9
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.2e-125 454.5 383 65.3
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.5e-125 454.1 581 50.8
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 2.0e-125 453.8 353 67.7
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 4.4e-125 452.6 573 51.1
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 4.4e-125 452.6 412 61.2
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 4.4e-125 452.6 586 49.5
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 7.5e-125 451.8 643 46.8
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.7e-124 450.7 345 69.6
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.2e-124 450.3 410 64.6
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 2.9e-124 449.9 587 50.6
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 6.4e-124 448.7 355 67.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 6.4e-124 448.7 596 49.0
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.4e-123 447.6 344 68.3
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 2.4e-123 446.8 592 50.0
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.4e-123 446.8 637 46.6
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 4.1e-123 446.0 399 63.2
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 5.4e-123 445.7 403 63.0
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 7.0e-123 445.3 619 48.5
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 7.0e-123 445.3 355 69.6
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 9.2e-123 444.9 582 50.5
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.6e-122 444.1 341 67.4
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 1.6e-122 444.1 597 50.3
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 2.7e-122 443.4 424 59.9
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 4.6e-122 442.6 462 58.7
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 4.6e-122 442.6 546 51.5
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 4.6e-122 442.6 367 65.9
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 7.8e-122 441.8 587 49.9
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 5.0e-121 439.1 482 55.8
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.1e-120 438.0 341 67.7
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.5e-120 437.6 598 49.2
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 5.6e-120 435.6 409 60.6
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.1e-119 433.7 586 48.0
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.3e-118 430.3 306 74.2
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 4.0e-118 429.5 347 65.7
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 6.8e-118 428.7 566 52.3
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 8.9e-118 428.3 301 74.8
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 2.2e-116 423.7 428 58.9
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 7.0e-115 418.7 340 64.7
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 3.9e-113 412.9 388 58.0
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.7e-111 406.0 439 55.1
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 4.7e-111 406.0 563 46.2
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 3.1e-110 403.3 351 61.3
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 4.0e-110 402.9 280 76.4
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 9.9e-109 398.3 318 68.9
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 2.2e-108 397.1 329 64.1
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 3.7e-108 396.4 409 58.4
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 2.1e-106 390.6 281 73.0
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 2.1e-106 390.6 281 73.0
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 2.7e-106 390.2 281 72.6
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 6.0e-106 389.0 352 61.1
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.5e-98 363.2 341 58.9
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.1e-95 354.0 341 58.4
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.1e-94 351.7 257 71.6
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 1.0e-73 282.0 450 42.2
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.4e-70 271.6 287 52.6
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.1e-70 270.4 446 41.7
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 2.0e-69 267.7 176 75.0
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 7.7e-61 239.2 271 49.4
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 2.5e-59 234.2 216 63.4
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 9.4e-51 205.7 178 63.5
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 2.3e-49 201.1 198 55.1
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 2.8e-47 194.1 288 42.7
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 9.1e-46 189.1 152 67.1
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 1.0e-44 185.7 335 37.0
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 2.5e-43 181.0 281 40.9
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.7e-42 176.8 147 63.3
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 8.0e-42 176.0 506 33.0
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.5e-32 145.2 158 48.7
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 3.8e-28 130.6 284 35.9
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-21 109.0 83 63.9
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.5e-19 102.1 73 68.5
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.5e-19 102.1 73 68.5
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.5e-19 101.3 73 67.1
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 6.1e-18 96.7 73 68.5
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 8.0e-18 96.3 71 67.6
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 3.0e-17 94.4 73 67.1
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 3.0e-17 94.4 92 54.3
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 4.9e-15 87.0 56 75.0
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 4.9e-15 87.0 56 75.0
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 1.8e-14 85.1 76 68.4
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 2.7e-13 81.3 77 55.8
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.9e-13 80.1 232 30.2
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 7.8e-13 79.7 64 65.6
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 5.8e-08 63.5 54 61.1
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 5.8e-08 63.5 54 61.1
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 2.4e-06 58.2 71 47.9
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 3.2e-06 57.8 71 47.9
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 4.1e-06 57.4 201 24.4
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 7.0e-06 56.6 199 23.6


User provided reference genes

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