Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 5.7e-234 813.9 422 100.0
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 3.8e-230 801.2 422 98.6
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 8.5e-230 800.0 422 98.3
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 8.5e-230 800.0 422 98.3
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.4e-229 799.3 422 98.3
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 3.6e-228 794.7 422 97.4
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 1.0e-227 793.1 422 97.2
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 1.4e-227 792.7 422 97.2
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 1.4e-227 792.7 422 97.2
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-227 792.3 422 97.2
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 1.8e-227 792.3 422 97.2
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.0e-226 788.9 420 97.1
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 3.3e-226 788.1 422 96.7
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 4.4e-226 787.7 422 96.4
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 2.8e-225 785.0 422 96.0
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 2.8e-225 785.0 422 95.5
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 4.8e-225 784.3 422 95.5
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 1.8e-224 782.3 422 95.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 4.5e-223 777.7 422 94.8
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.7e-215 751.9 422 91.2
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.2e-210 736.5 418 89.7
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.3e-209 733.0 419 89.5
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.7e-209 732.6 422 88.2
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.7e-209 732.6 418 89.2
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 6.3e-209 730.7 418 89.0
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.8e-208 729.2 418 89.2
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 2.4e-208 728.8 389 96.9
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.9
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.4e-208 727.6 422 87.4
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.2e-207 726.5 422 87.2
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.0
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 2.7e-207 725.3 422 87.4
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 5.9e-207 724.2 422 87.2
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.9e-207 724.2 422 87.2
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.0e-206 723.4 418 87.8
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.0e-206 723.4 419 87.4
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.0e-206 723.4 421 87.2
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.3e-206 723.0 422 86.7
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.7e-206 722.6 422 87.9
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 2.3e-206 722.2 422 87.4
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 2.3e-206 722.2 420 87.1
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 87.3
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.0e-206 721.1 431 85.8
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 6.5e-206 720.7 422 86.7
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.1e-205 719.9 418 87.3
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.5e-205 719.5 418 87.6
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.5e-205 719.5 422 86.0
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.5e-205 719.5 418 87.3
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.5e-205 719.5 422 87.0
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.5e-205 719.5 420 86.9
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.5e-205 719.5 420 86.9
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 86.5
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.5e-205 717.6 422 86.7
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 5.5e-205 717.6 422 85.5
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 9.5e-205 716.8 419 86.9
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 9.5e-205 716.8 422 87.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 86.0
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.2e-204 716.5 418 87.1
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.2e-204 716.5 418 86.8
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.6e-204 716.1 418 87.6
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.6e-204 716.1 421 86.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 2.1e-204 715.7 419 86.9
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 86.5
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.8e-204 715.3 418 87.1
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 6.1e-204 714.1 418 86.8
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 8.0e-204 713.8 417 87.1
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 8.0e-204 713.8 418 85.9
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.4e-203 713.0 422 85.5
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.8e-203 712.6 418 86.4
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 85.5
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 2.3e-203 712.2 420 86.2
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.3e-203 712.2 418 86.1
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 85.1
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 85.1
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.6
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 8.8e-203 710.3 422 85.5
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 8.8e-203 710.3 422 86.5
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.8e-203 710.3 418 87.8
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.2e-202 709.9 421 86.0
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 85.5
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.2
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.0e-202 709.1 418 85.6
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 4.4e-202 708.0 422 86.3
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 4.4e-202 708.0 418 85.6
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 4.4e-202 708.0 422 85.1
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 5.7e-202 707.6 418 85.4
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 5.7e-202 707.6 422 85.8
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 7.5e-202 707.2 418 86.1
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 85.3
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.3e-201 706.4 422 85.1
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-201 706.4 470 79.6
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-201 706.4 470 79.6
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.3e-201 706.4 453 81.2
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.3e-201 706.4 418 85.4
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.7e-201 706.1 418 84.9
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.9e-201 704.5 437 83.1
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 86.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 1.1e-200 703.4 418 85.4
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.4e-200 703.0 437 82.6
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.4e-200 703.0 442 83.3
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.4e-200 702.2 420 85.2
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 3.1e-200 701.8 422 84.4
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.0e-199 699.1 418 84.7
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 4.5e-199 698.0 418 84.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 5.9e-199 697.6 422 84.1
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 5.9e-199 697.6 418 84.7
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.8e-199 697.2 431 83.5
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.0e-198 696.8 430 83.5
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 3.8e-198 694.9 422 84.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 5.0e-198 694.5 422 85.1
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.5e-197 693.0 419 84.7
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 9.5e-197 690.3 419 83.5
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 9.5e-197 690.3 447 81.9
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 4.7e-196 688.0 418 82.5
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.5e-194 682.9 418 84.0
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 3.7e-193 678.3 422 81.0
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-192 676.4 424 81.8
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 5.9e-191 671.0 501 72.3
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.3e-187 659.1 412 82.8
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.2e-187 657.9 472 75.2
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 6.8e-187 657.5 422 80.8
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.3e-185 653.3 423 78.5
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.2e-185 652.5 420 80.7
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.1e-184 650.2 374 88.5
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.1e-180 636.0 417 80.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 8.1e-180 634.0 389 83.3
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.0e-178 629.4 377 83.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.9e-176 622.9 405 78.0
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 4.1e-176 621.7 363 86.5
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.1e-175 619.4 398 78.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 7.8e-175 617.5 372 83.1
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 4.7e-172 608.2 416 74.0
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 4.0e-171 605.1 418 75.8
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.4e-163 580.1 400 72.0
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.4e-160 570.1 331 86.7
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.1e-159 566.2 408 73.8
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.1e-152 543.9 309 89.6
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.0e-150 537.3 396 67.7
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.9e-149 533.1 421 64.6
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 1.7e-145 520.0 398 67.1
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.5e-136 488.4 458 62.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 7.4e-133 478.0 278 89.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.9e-128 463.4 392 67.6
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.2e-128 462.2 284 81.7
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.9e-120 436.8 260 85.4
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.9e-113 412.9 243 87.7
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 4.1e-107 392.5 236 81.8
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.0e-101 373.6 222 83.3
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 1.1e-96 357.8 205 87.3
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.8e-94 348.2 244 73.0
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.0e-86 323.2 287 63.8
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 3.0e-73 280.0 293 51.5
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.4e-67 261.2 207 65.7
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.6e-63 247.7 147 82.3
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.2e-60 237.3 189 61.4
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 5.4e-51 206.1 133 72.9
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 7.8e-50 202.2 194 62.4
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 3.8e-44 183.3 119 72.3
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 8.4e-44 182.2 114 86.0
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.0e-41 173.7 161 61.5
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 7.6e-37 159.1 288 36.1
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 4.9e-36 156.4 106 75.5
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.6e-34 151.4 157 58.6
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.1e-34 151.0 157 58.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 5.8e-29 132.9 80 82.5
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 3.2e-27 127.1 179 39.7
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.8e-22 111.3 149 46.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.0e-20 105.5 69 75.4
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 3.7e-15 87.0 96 54.2
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.5e-13 81.6 50 88.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 2.6e-13 80.9 53 79.2
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 4.2e-11 73.6 40 92.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.0e-09 68.9 37 83.8
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea HOM05D002061 ORTHO05D002849 3.0e-09 67.4 415 25.1
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.3e-08 63.9 62 50.0
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 5.7e-08 63.2 373 25.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 3.7e-07 60.5 108 34.3
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 8.2e-07 59.3 106 34.0
arahy.Tifrunner.gnm1.ann1.DG289Q Arachis hypogaea HOM05D000064 ORTHO05D004075 6.9e-06 56.2 89 39.3
arahy.Tifrunner.gnm1.ann1.WB2JVN Arachis hypogaea HOM05D002038 ORTHO05D002165 6.9e-06 56.2 89 39.3


User provided reference genes

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