Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46790 Brassica carinata HOM05D040591 ORTHO05D039644 2.2e-114 415.6 208 100.0
C06p47830 Brassica napus HOM05D040591 ORTHO05D039644 2.2e-114 415.6 208 100.0
BcaC03g14577 Brassica carinata HOM05D040591 ORTHO05D093889 1.8e-31 140.2 80 90.0
A09p07190 Brassica napus HOM05D000824 ORTHO05D003555 1.5e-17 94.0 118 53.4
Sp2g24310 Schrenkiella parvula HOM05D000824 ORTHO05D003555 2.5e-17 93.2 86 65.1
AT5G61000 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 4.3e-17 92.4 86 64.0
Thhalv10003822m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 7.3e-17 91.7 87 63.2
BcaC04g23467 Brassica carinata HOM05D000824 ORTHO05D003555 9.6e-17 91.3 95 60.0
C09p08030 Brassica napus HOM05D000824 ORTHO05D003555 9.6e-17 91.3 95 60.0
BolC9t53717H Brassica oleracea HOM05D000824 ORTHO05D003555 9.6e-17 91.3 95 60.0
BraA09t36368Z Brassica rapa HOM05D000824 ORTHO05D003555 3.6e-16 89.4 95 58.9
Carub.0008s2169 Capsella rubella HOM05D000824 ORTHO05D003555 8.1e-16 88.2 86 60.5
AL8G37660 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 1.1e-15 87.8 87 59.8
BcaNung06900 Brassica carinata HOM05D000824 ORTHO05D003555 1.4e-15 87.4 87 63.2
BcaC06g33184 Brassica carinata HOM05D000824 ORTHO05D003555 3.1e-15 86.3 87 62.1
C07p44760 Brassica napus HOM05D000824 ORTHO05D003555 3.1e-15 86.3 87 62.1
BolC7t44999H Brassica oleracea HOM05D000824 ORTHO05D003555 3.1e-15 86.3 87 62.1
CARHR274710 Cardamine hirsuta HOM05D000824 ORTHO05D003555 4.0e-15 85.9 87 57.5
A03p46710 Brassica napus HOM05D000824 ORTHO05D003555 1.5e-14 84.0 87 60.9
BraA03t13794Z Brassica rapa HOM05D000824 ORTHO05D003555 1.5e-14 84.0 87 60.9
THA.LOC104819400 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 1.1e-12 77.8 86 55.8
AT5G08020 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 2.1e-11 73.6 95 52.6
Carub.0006s0691 Capsella rubella HOM05D000824 ORTHO05D003555 3.5e-11 72.8 86 54.7
CARHR205160 Cardamine hirsuta HOM05D000824 ORTHO05D003555 1.0e-10 71.2 89 52.8
Aa31LG3G18510 Aethionema arabicum HOM05D000824 ORTHO05D003555 3.0e-10 69.7 91 44.0
Thhalv10013014m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 3.0e-10 69.7 85 52.9
AL6G18370 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 3.9e-10 69.3 95 49.5
BcaB01g05642 Brassica carinata HOM05D000824 ORTHO05D003555 1.1e-09 67.8 86 50.0
BolC3t12936H Brassica oleracea HOM05D000824 ORTHO05D003555 1.1e-09 67.8 86 50.0
Sp6g34920 Schrenkiella parvula HOM05D000824 ORTHO05D003555 1.1e-09 67.8 89 49.4
A03p03540 Brassica napus HOM05D000824 ORTHO05D003555 3.3e-09 66.2 86 50.0
BraA03t09704Z Brassica rapa HOM05D000824 ORTHO05D003555 3.3e-09 66.2 86 50.0
C03p03990 Brassica napus HOM05D000824 ORTHO05D003555 7.4e-09 65.1 83 49.4
BcaB01g05683 Brassica carinata HOM05D000824 ORTHO05D003555 2.1e-08 63.5 86 47.7
unitig_62.g23555 Utricularia gibba HOM05D000824 ORTHO05D003555 3.7e-08 62.8 83 44.6
Cpa.g.sc1086.1 Carica papaya HOM05D000824 ORTHO05D003555 1.1e-07 61.2 83 45.8
BcaB08g37297 Brassica carinata HOM05D000824 ORTHO05D003555 2.4e-07 60.1 86 47.7
CAN.G1228.20 Capsicum annuum HOM05D000824 ORTHO05D003555 3.1e-07 59.7 83 42.2
Dinv22775 Davidia involucrata HOM05D000824 ORTHO05D003555 4.0e-07 59.3 83 44.6
Phvul.003G184400 Phaseolus vulgaris HOM05D000824 ORTHO05D003555 4.0e-07 59.3 83 43.4
Sopen03g034120 Solanum pennellii HOM05D000824 ORTHO05D003555 4.0e-07 59.3 83 42.2
PGSC0003DMG400024634 Solanum tuberosum HOM05D000824 ORTHO05D003555 4.0e-07 59.3 83 42.2
Glyma.05G020600 Glycine max HOM05D000824 ORTHO05D003555 5.3e-07 58.9 83 44.6
Peaxi162Scf00201g00330 Petunia axillaris HOM05D000824 ORTHO05D003555 5.3e-07 58.9 83 42.2
Solyc03g115050.3 Solanum lycopersicum HOM05D000824 ORTHO05D003555 5.3e-07 58.9 83 42.2
Dinv17419 Davidia involucrata HOM05D000824 ORTHO05D003555 9.0e-07 58.2 83 44.6
Nitab4.5_0009401g0060 Nicotiana tabacum HOM05D000824 ORTHO05D003555 9.0e-07 58.2 83 42.2
Psat4g047800 Pisum sativum HOM05D000824 ORTHO05D003555 1.2e-06 57.8 73 45.2
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 1.5e-06 57.4 83 43.4
GSVIVG01007849001 Vitis vinifera HOM05D000824 ORTHO05D003555 1.5e-06 57.4 83 42.2
TWI81G1098 Tripterygium wilfordii HOM05D000824 ORTHO05D003555 2.0e-06 57.0 73 45.2
Actinidia04822 Actinidia chinensis HOM05D000824 ORTHO05D003555 2.6e-06 56.6 83 41.0
Hma1.2p1_0060F.1_g033050 Hydrangea macrophylla HOM05D000824 ORTHO05D003555 2.6e-06 56.6 80 42.5
RcHm_v2.0_Chr7g0183161 Rosa chinensis HOM05D000824 ORTHO05D003555 3.4e-06 56.2 87 43.7
Medtr4g109580 Medicago truncatula HOM05D000824 ORTHO05D003555 4.5e-06 55.8 86 44.2
arahy.Tifrunner.gnm1.ann1.E3U0AR Arachis hypogaea HOM05D000824 ORTHO05D003555 5.8e-06 55.5 83 41.0
arahy.Tifrunner.gnm1.ann1.J8WCL7 Arachis hypogaea HOM05D000824 ORTHO05D003555 5.8e-06 55.5 83 41.0
SGA_v2.0_scaffold25G10955 Striga asiatica HOM05D000824 ORTHO05D003555 5.8e-06 55.5 115 34.8
Glyma.17G078700 Glycine max HOM05D000824 ORTHO05D003555 7.6e-06 55.1 83 42.2
HanXRQChr02g0044771 Helianthus annuus HOM05D000824 ORTHO05D003555 9.9e-06 54.7 83 39.8
Lj9C471T8 Lonicera japonica HOM05D000824 ORTHO05D003555 9.9e-06 54.7 73 43.8


User provided reference genes

Program Settings