Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.3e-268 928.3 478 100.0
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 7.6e-259 896.7 478 97.7
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 6.4e-258 893.6 497 94.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.2e-251 872.8 497 92.6
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 7.1e-249 863.6 497 91.8
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.4e-244 849.4 498 89.0
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.8e-226 788.1 495 81.6
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 3.4e-219 765.0 497 79.5
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.0e-215 753.4 497 79.1
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.5e-214 748.8 496 79.4
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.7e-205 719.5 431 84.7
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.8e-202 708.4 496 75.4
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.6e-200 703.0 430 83.7
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 3.7e-189 665.2 503 71.2
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 4.5e-171 605.1 512 63.7
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.1e-168 596.3 465 66.7
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 4.7e-168 595.1 508 61.4
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.4e-167 593.6 512 63.3
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.3e-167 592.8 462 66.7
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 5.2e-167 591.7 476 65.3
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 2.0e-166 589.7 512 62.7
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 2.0e-166 589.7 499 62.5
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.3e-165 587.0 477 64.6
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.0e-163 579.7 500 61.8
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.7e-163 579.3 497 62.8
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 3.5e-163 578.9 505 61.6
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.7e-162 576.6 514 61.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.0e-162 575.1 502 62.9
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 3.3e-161 572.4 500 61.2
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.2e-160 570.5 474 63.7
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 6.8e-159 564.7 500 61.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.2e-158 563.9 458 64.6
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.0e-158 563.1 502 61.2
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.6e-158 562.8 439 67.0
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.6e-158 562.8 508 61.2
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 7.5e-158 561.2 475 60.8
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 1.4e-156 557.0 464 65.5
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.4e-156 556.2 511 59.9
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.4e-156 556.2 472 63.3
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 2.0e-155 553.1 439 66.5
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 3.5e-155 552.4 504 59.9
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.8e-155 551.2 461 63.6
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.0e-154 550.8 503 59.6
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.7e-154 550.1 506 60.7
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 2.3e-154 549.7 462 62.1
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 3.9e-154 548.9 503 59.2
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 5.0e-154 548.5 462 62.1
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 8.6e-154 547.7 469 61.8
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.1e-153 547.4 497 59.0
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 3.3e-153 545.8 461 63.8
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 4.3e-153 545.4 524 58.0
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.2e-152 543.9 466 62.0
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.6e-152 543.5 518 57.7
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.1e-152 543.1 503 59.8
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.7e-152 542.0 498 60.2
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.8e-151 540.0 461 62.0
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 3.1e-151 539.3 463 60.3
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.0e-151 538.9 552 55.6
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 6.8e-151 538.1 452 63.5
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.0e-150 536.6 503 59.4
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 3.4e-150 535.8 452 61.5
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.3e-149 533.9 459 61.7
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.7e-149 533.5 501 58.7
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.2e-149 533.1 507 56.4
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.9e-149 532.7 448 61.6
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.9e-149 532.7 499 59.3
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.2e-148 529.3 487 61.2
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 3.5e-147 525.8 461 62.7
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 4.6e-147 525.4 500 60.0
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.5e-145 520.4 460 61.3
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.2e-144 517.3 515 55.9
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.2e-143 511.9 491 59.1
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.2e-142 510.8 508 57.9
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 3.4e-142 509.2 470 58.7
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 5.8e-142 508.4 491 58.7
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 9.9e-142 507.7 491 58.5
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 2.2e-141 506.5 395 66.6
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 3.7e-141 505.8 444 61.5
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.1e-140 504.2 443 61.4
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.1e-140 504.2 489 58.7
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.4e-140 503.8 409 64.5
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.4e-140 503.1 472 59.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 3.2e-140 502.7 437 62.0
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 6.6e-138 495.0 442 60.4
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 8.6e-138 494.6 502 54.0
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 8.6e-138 494.6 450 58.7
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 7.3e-137 491.5 372 68.3
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 8.1e-136 488.0 552 50.7
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.2e-134 484.2 501 56.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.9e-132 476.9 488 55.3
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.1e-129 467.6 359 65.7
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.1e-127 459.5 406 60.1
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.9e-125 453.0 349 68.5
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 3.2e-124 449.5 399 60.7
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.1e-121 441.0 425 55.5
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.4e-121 438.3 336 67.0
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 3.1e-119 433.0 345 63.5
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 7.1e-116 421.8 473 54.1
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 5.6e-113 412.1 416 53.4
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 3.4e-110 402.9 437 53.5
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 1.0e-109 401.4 379 58.8
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 3.3e-105 386.3 377 55.7
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 2.7e-99 366.7 305 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 2.4e-95 353.6 406 48.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.5e-94 350.9 393 51.9
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.7e-93 347.4 505 43.8
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.2e-93 347.1 345 54.8
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.9e-90 336.3 451 45.5
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.1e-87 326.6 251 66.9
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.5e-86 324.3 254 63.8
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 4.5e-86 322.8 454 44.9
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 9.4e-84 315.1 386 46.6
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.8e-80 302.8 292 57.5
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 3.5e-78 296.6 284 59.2
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 4.0e-66 256.5 358 44.4
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.1e-60 238.4 329 44.4
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.0e-58 231.9 284 48.9
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 8.6e-53 212.2 417 36.2
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.2e-49 201.8 435 32.6
BcaB03g15197 Brassica carinata HOM05D063035 ORTHO05D093409 8.9e-34 149.1 109 77.1
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.1e-31 140.2 138 57.2
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.1e-30 137.9 127 55.9
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 2.8e-27 127.5 186 44.1
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.3e-26 124.4 77 77.9
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 4.6e-22 110.2 58 81.0
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.1e-15 89.0 68 58.8
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 2.4e-15 87.8 130 47.7
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.5e-14 84.0 148 39.9
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.0e-13 82.4 107 52.3
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.3e-11 75.5 62 61.3
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.1e-07 62.4 161 34.2
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.2e-07 60.5 204 28.9
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 9.3e-07 59.3 63 52.4
SMO197G0109 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.6e-06 57.0 140 32.1
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 6.0e-06 56.6 45 53.3


User provided reference genes

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