Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-46 189.9 118 100.0
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 3.6e-45 184.9 118 97.5
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 6.2e-37 157.5 118 81.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.1e-36 156.8 122 86.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 4.0e-36 154.8 120 84.2
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 6.8e-36 154.1 92 92.4
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-33 146.4 93 90.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-33 146.4 93 90.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-33 146.4 93 90.3
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 3.2e-33 145.2 93 89.2
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.8e-29 132.1 118 78.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.6e-27 125.6 119 79.0
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 4.9e-26 121.3 118 78.0
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.9e-26 121.3 115 70.4
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 6.4e-26 120.9 118 72.9
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-25 120.2 110 65.5
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.4e-25 119.8 126 65.9
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.6e-24 116.3 118 66.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 3.3e-22 108.6 103 65.0
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.6e-21 106.3 91 70.3
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.1e-21 105.9 80 82.5
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.1e-21 105.9 121 65.3
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.8e-21 105.5 112 66.1
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 3.6e-21 105.1 117 70.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.6e-21 105.1 104 64.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 6.2e-21 104.4 117 70.1
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 8.1e-21 104.0 117 71.8
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 8.1e-21 104.0 103 62.1
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.1e-20 103.6 119 64.7
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.1e-20 103.6 127 54.3
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.1e-20 103.6 104 63.5
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.8e-20 102.8 92 67.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.8e-20 102.8 101 66.3
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.8e-20 102.8 99 65.7
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.4e-20 102.4 124 57.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.4e-20 102.4 79 75.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 3.1e-20 102.1 118 65.3
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.0e-20 101.7 132 62.1
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 5.3e-20 101.3 119 63.9
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 6.9e-20 100.9 102 63.7
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 6.9e-20 100.9 129 55.0
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 6.9e-20 100.9 121 62.8
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 6.9e-20 100.9 121 62.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 9.0e-20 100.5 112 67.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 9.0e-20 100.5 121 60.3
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 9.0e-20 100.5 96 63.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 9.0e-20 100.5 92 64.1
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.2e-19 100.1 112 66.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.2e-19 100.1 106 67.0
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.2e-19 100.1 81 74.1
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.2e-19 100.1 118 66.1
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.5e-19 99.8 97 66.0
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-19 99.8 92 62.0
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-19 99.8 114 59.6
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 4.5e-19 98.2 85 75.3
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 4.5e-19 98.2 123 61.8
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 5.8e-19 97.8 70 75.7
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 5.8e-19 97.8 120 63.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 5.8e-19 97.8 94 63.8
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 7.6e-19 97.4 70 74.3
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 7.6e-19 97.4 124 55.6
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.6e-19 97.4 68 75.0
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.6e-19 97.4 62 77.4
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 7.6e-19 97.4 94 69.1
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 9.9e-19 97.1 100 68.0
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.3e-18 96.7 117 61.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.3e-18 96.7 81 74.1
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-18 96.7 124 57.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.3e-18 96.7 111 64.9
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-18 96.7 82 74.4
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-18 96.7 82 74.4
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.7e-18 96.3 90 60.0
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.7e-18 96.3 52 88.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.7e-18 96.3 70 74.3
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.2e-18 95.9 108 59.3
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 2.2e-18 95.9 124 59.7
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.9e-18 95.5 115 61.7
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.9e-18 95.5 117 63.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.9e-18 95.5 85 62.4
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.8e-18 95.1 111 64.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 3.8e-18 95.1 63 81.0
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 3.8e-18 95.1 67 76.1
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 3.8e-18 95.1 117 61.5
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 3.8e-18 95.1 94 67.0
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 3.8e-18 95.1 93 60.2
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 4.9e-18 94.7 52 84.6
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 6.4e-18 94.4 108 55.6
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 8.4e-18 94.0 107 65.4
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 8.4e-18 94.0 124 55.6
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.4e-18 94.0 108 63.9
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.1e-17 93.6 110 65.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.1e-17 93.6 81 74.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-17 93.2 111 63.1
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.9e-17 92.8 114 59.6
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.9e-17 92.8 65 70.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-17 92.8 110 65.5
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.9e-17 92.8 100 66.0
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.4e-17 92.4 114 59.6
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.2e-17 92.0 114 65.8
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.2e-17 92.0 53 86.8
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.2e-17 91.7 92 59.8
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 4.2e-17 91.7 89 59.6
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 5.4e-17 91.3 108 52.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 7.1e-17 90.9 88 67.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.1e-17 90.9 132 55.3
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.3e-17 90.5 111 60.4
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 9.3e-17 90.5 110 63.6
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 9.3e-17 90.5 94 59.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.2e-16 90.1 57 82.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.6e-16 89.7 102 56.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.6e-16 89.7 92 57.6
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.7e-16 89.0 62 72.6
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.5e-16 88.6 110 63.6
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 3.5e-16 88.6 60 76.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 7.9e-16 87.4 102 52.9
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 2.3e-15 85.9 116 57.8
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.0e-15 85.5 112 63.4
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-15 85.5 60 73.3
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 3.9e-15 85.1 95 54.7
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 6.7e-15 84.3 96 55.2
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.1e-14 83.6 103 53.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-13 79.7 113 47.8
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 6.2e-13 77.8 95 51.6
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.1e-13 77.4 92 53.3
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 1.1e-12 77.0 67 58.2
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.4e-12 76.6 98 55.1
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 4.0e-12 75.1 53 69.8
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 5.3e-12 74.7 48 72.9
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 2.6e-11 72.4 99 49.5
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 4.2e-09 65.1 65 67.7
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 7.1e-09 64.3 58 58.6
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.2e-08 63.5 65 66.2
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.2e-08 63.5 88 52.3
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 3.0e-07 58.9 44 84.1
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 8.7e-07 57.4 90 46.7


User provided reference genes

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