Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p36700 Brassica napus HOM05D005572 ORTHO05D032868 2.5e-125 452.2 239 100.0
BolC6t38780H Brassica oleracea HOM05D005572 ORTHO05D032868 1.1e-77 293.9 168 94.0
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 5.2e-43 178.7 180 62.8
C07p09540 Brassica napus HOM05D005572 ORTHO05D007494 5.8e-42 175.3 122 81.1
BolC7t41385H Brassica oleracea HOM05D005572 ORTHO05D007494 5.8e-42 175.3 122 81.1
BcaC06g35936 Brassica carinata HOM05D005572 ORTHO05D007494 2.9e-41 172.9 174 60.9
A07p06400 Brassica napus HOM05D005572 ORTHO05D007494 2.9e-41 172.9 122 80.3
BraA07t28433Z Brassica rapa HOM05D005572 ORTHO05D007494 2.9e-41 172.9 122 80.3
BcaB06g26862 Brassica carinata HOM05D005572 ORTHO05D007494 3.8e-41 172.6 174 60.9
Thhalv10002579m.g Eutrema salsugineum HOM05D005572 ORTHO05D007494 7.1e-40 168.3 174 59.2
Carub.0008s0467 Capsella rubella HOM05D005572 ORTHO05D007494 6.0e-39 165.2 122 76.2
AL3G43360 Arabidopsis lyrata HOM05D005572 ORTHO05D007494 7.8e-39 164.9 121 77.7
Aa31sc209G80 Aethionema arabicum HOM05D005572 ORTHO05D007494 1.3e-38 164.1 121 76.0
Sp3g24270 Schrenkiella parvula HOM05D005572 ORTHO05D007494 3.9e-38 162.5 174 58.0
CARHR103410 Cardamine hirsuta HOM05D005572 ORTHO05D007494 1.9e-37 160.2 121 75.2
AT2G05830 Arabidopsis thaliana HOM05D005572 ORTHO05D007494 3.3e-37 159.5 121 74.4
Medtr2g042450 Medicago truncatula HOM05D005572 ORTHO05D007494 3.9e-30 136.0 121 66.1
Manes.16G094100 Manihot esculenta HOM05D005572 ORTHO05D007494 5.1e-30 135.6 121 63.6
Thecc.09G074800 Theobroma cacao HOM05D005572 ORTHO05D007494 5.1e-30 135.6 121 62.8
Peaxi162Scf01343g00158 Petunia axillaris HOM05D005572 ORTHO05D007494 6.7e-30 135.2 121 62.8
Cfa002972 Carpinus fangiana HOM05D005572 ORTHO05D007494 8.7e-30 134.8 121 62.0
Cc06_g12340 Coffea canephora HOM05D005572 ORTHO05D007494 8.7e-30 134.8 121 63.6
COL.COLO4_18078 Corchorus olitorius HOM05D005572 ORTHO05D007494 8.7e-30 134.8 121 61.2
Duzib187G1546 Durio zibethinus HOM05D005572 ORTHO05D007494 1.5e-29 134.0 121 62.8
Gohir.A13G189700 Gossypium hirsutum HOM05D005572 ORTHO05D007494 1.5e-29 134.0 121 62.0
Nitab4.5_0006512g0010 Nicotiana tabacum HOM05D005572 ORTHO05D007494 1.5e-29 134.0 122 61.5
CiPaw.03G204200 Carya illinoinensis HOM05D005572 ORTHO05D007494 1.9e-29 133.7 121 64.5
Haze_26030 Corylus avellana HOM05D005572 ORTHO05D007494 1.9e-29 133.7 121 62.0
SGA_v2.0_scaffold21G09507 Striga asiatica HOM05D005572 ORTHO05D007494 1.9e-29 133.7 121 64.5
DCAR_024760 Daucus carota HOM05D005572 ORTHO05D007494 3.3e-29 132.9 121 63.6
DCAR_031912 Daucus carota HOM05D005572 ORTHO05D007494 3.3e-29 132.9 121 63.6
Gorai.013G223100 Gossypium raimondii HOM05D005572 ORTHO05D007494 3.3e-29 132.9 121 61.2
CAN.G432.1 Capsicum annuum HOM05D005572 ORTHO05D007494 4.3e-29 132.5 121 62.0
TAR624G0716 Trochodendron aralioides HOM05D005572 ORTHO05D007494 4.3e-29 132.5 121 62.0
Nitab4.5_0000507g0030 Nicotiana tabacum HOM05D005572 ORTHO05D007494 5.6e-29 132.1 122 60.7
Potri.006G219900 Populus trichocarpa HOM05D005572 ORTHO05D007494 7.4e-29 131.7 121 62.0
Atru.chr7.1725 Acer truncatum HOM05D005572 ORTHO05D007494 9.6e-29 131.3 121 62.8
Migut.L01574 Erythranthe guttata HOM05D005572 ORTHO05D007494 9.6e-29 131.3 121 62.0
TPR.G29960 Trifolium pratense HOM05D005572 ORTHO05D007494 9.6e-29 131.3 121 63.6
arahy.Tifrunner.gnm1.ann1.5ID3PX Arachis hypogaea HOM05D005572 ORTHO05D007494 1.6e-28 130.6 121 63.6
arahy.Tifrunner.gnm1.ann1.RZTL2L Arachis hypogaea HOM05D005572 ORTHO05D007494 1.6e-28 130.6 121 63.6
HanXRQChr01g0010261 Helianthus annuus HOM05D005572 ORTHO05D007494 2.1e-28 130.2 122 61.5
Nn8g38598 Nelumbo nucifera HOM05D005572 ORTHO05D007494 2.1e-28 130.2 121 62.0
Psat1g135040 Pisum sativum HOM05D005572 ORTHO05D007494 2.1e-28 130.2 113 66.4
CANSAT56G0206 Cannabis sativa HOM05D005572 ORTHO05D007494 2.8e-28 129.8 122 63.1
Sed0012066 Sechium edule HOM05D005572 ORTHO05D007494 2.8e-28 129.8 121 61.2
AUR62025270 Chenopodium quinoa HOM05D005572 ORTHO05D007494 3.7e-28 129.4 121 61.2
AUR62043948 Chenopodium quinoa HOM05D005572 ORTHO05D007494 3.7e-28 129.4 121 61.2
MBI19_g05299_MAGBIO Magnolia biondii HOM05D005572 ORTHO05D007494 3.7e-28 129.4 121 60.3
PGSC0003DMG400025199 Solanum tuberosum HOM05D005572 ORTHO05D007494 3.7e-28 129.4 121 59.5
Cpa.g.sc28.23 Carica papaya HOM05D005572 ORTHO05D007494 4.8e-28 129.0 173 45.7
Gorai.001G015800 Gossypium raimondii HOM05D005572 ORTHO05D007494 4.8e-28 129.0 121 61.2
Lalb_Chr11g0074191 Lupinus albus HOM05D005572 ORTHO05D007494 4.8e-28 129.0 121 63.6
Oeu005167.1 Olea europaea HOM05D005572 ORTHO05D007494 4.8e-28 129.0 121 59.5
EL10Ac8g19040 Beta vulgaris HOM05D005572 ORTHO05D007494 6.2e-28 128.6 121 61.2
Duzib150G0334 Durio zibethinus HOM05D005572 ORTHO05D007494 6.2e-28 128.6 123 61.0
Solyc08g022210.4 Solanum lycopersicum HOM05D005572 ORTHO05D007494 6.2e-28 128.6 121 59.5
Sopen08g007790 Solanum pennellii HOM05D005572 ORTHO05D007494 6.2e-28 128.6 121 59.5
ATR0053G061 Amborella trichopoda HOM05D005572 ORTHO05D007494 8.1e-28 128.3 120 61.7
Hma1.2p1_0071F.1_g037830 Hydrangea macrophylla HOM05D005572 ORTHO05D007494 8.1e-28 128.3 121 60.3
Sabra06G0169800 Salix brachista HOM05D005572 ORTHO05D007494 8.1e-28 128.3 121 60.3
TWI34G1368 Tripterygium wilfordii HOM05D005572 ORTHO05D007494 8.1e-28 128.3 121 59.5
AUR62025268 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.1e-27 127.9 121 60.3
AUR62043947 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.1e-27 127.9 121 60.3
Lj6g0023702 Lotus japonicus HOM05D005572 ORTHO05D007494 1.1e-27 127.9 121 61.2
CSS0010419 Camellia sinensis var. sinensis HOM05D005572 ORTHO05D007494 1.4e-27 127.5 121 59.5
CSS0017384 Camellia sinensis var. sinensis HOM05D005572 ORTHO05D007494 1.4e-27 127.5 121 59.5
Ca_02199_v3 Cicer arietinum L. HOM05D005572 ORTHO05D007494 1.4e-27 127.5 121 62.0
Ciclev10008682m.g Citrus clementina HOM05D005572 ORTHO05D007494 1.8e-27 127.1 121 62.0
Aqoxy7G01023 Aquilegia oxysepala HOM05D005572 ORTHO05D007494 2.4e-27 126.7 174 45.4
Glyma.09G070700 Glycine max HOM05D005572 ORTHO05D007494 3.1e-27 126.3 121 62.0
Lj4C914T8 Lonicera japonica HOM05D005572 ORTHO05D007494 3.1e-27 126.3 121 60.3
CsaV3_1G041170 Cucumis sativus L. HOM05D005572 ORTHO05D007494 4.0e-27 125.9 121 58.7
Phvul.009G226400 Phaseolus vulgaris HOM05D005572 ORTHO05D007494 4.0e-27 125.9 121 60.3
Sc08g0008940 Simmondsia chinensis HOM05D005572 ORTHO05D007494 6.9e-27 125.2 121 60.3
ClCG03G014970 Citrullus lanatus HOM05D005572 ORTHO05D007494 9.0e-27 124.8 121 59.5
Actinidia30232 Actinidia chinensis HOM05D005572 ORTHO05D007494 1.2e-26 124.4 122 57.4
MSTRG.26475 Avicennia marina HOM05D005572 ORTHO05D007494 1.2e-26 124.4 121 60.3
Gohir.D07G015000 Gossypium hirsutum HOM05D005572 ORTHO05D007494 1.2e-26 124.4 121 59.5
GSVIVG01015055001 Vitis vinifera HOM05D005572 ORTHO05D007494 1.2e-26 124.4 121 57.0
PSO421G0494 Papaver somniferum HOM05D005572 ORTHO05D007494 1.5e-26 124.0 121 59.5
VMungo1309G2532 Vigna mungo HOM05D005572 ORTHO05D007494 1.5e-26 124.0 121 61.2
PSO104G0141 Papaver somniferum HOM05D005572 ORTHO05D007494 2.0e-26 123.6 121 59.5
SHI31880 Sapria himalayana HOM05D005572 ORTHO05D007494 2.0e-26 123.6 122 61.5
AUR62028271 Chenopodium quinoa HOM05D005572 ORTHO05D007494 3.4e-26 122.9 121 58.7
MELO3C015531.2 Cucumis melo HOM05D005572 ORTHO05D007494 5.8e-26 122.1 121 57.9
Rhsim05G0005700 Rhododendron simsii HOM05D005572 ORTHO05D007494 9.9e-26 121.3 121 54.5
QL11p001101 Quercus lobata HOM05D005572 ORTHO05D007494 1.3e-25 120.9 121 57.0
Hund26079 Selenicereus undatus HOM05D005572 ORTHO05D007494 2.2e-25 120.2 122 59.0
CDE06G1357 Ceratophyllum demersum HOM05D005572 ORTHO05D007494 2.9e-25 119.8 121 56.2
RcHm_v2.0_Chr2g0095391 Rosa chinensis HOM05D005572 ORTHO05D007494 2.9e-25 119.8 121 56.2
Ah.14g084870 Amaranthus hybridus HOM05D005572 ORTHO05D007494 6.4e-25 118.6 121 57.9
Eucgr.C00793 Eucalyptus grandis HOM05D005572 ORTHO05D007494 6.4e-25 118.6 121 58.7
ECA234G0641 Erigeron canadensis HOM05D005572 ORTHO05D007494 8.4e-25 118.2 122 60.7
MD15G1219600 Malus domestica HOM05D005572 ORTHO05D007494 8.4e-25 118.2 121 56.2
Prupe.7G196300 Prunus persica HOM05D005572 ORTHO05D007494 1.4e-24 117.5 121 54.5
MD02G1094700 Malus domestica HOM05D005572 ORTHO05D007494 1.9e-24 117.1 121 55.4
Os11g0216900 Oryza sativa ssp. japonica HOM05D005572 ORTHO05D007494 1.9e-24 117.1 121 54.5
PGR142G4103 Punica granatum HOM05D005572 ORTHO05D007494 1.9e-24 117.1 121 56.2
Zm00001eb168430 Zea mays HOM05D005572 ORTHO05D007494 3.2e-24 116.3 121 57.0
vmacro17127 Vaccinium macrocarpon HOM05D005572 ORTHO05D007494 4.2e-24 115.9 121 55.4
unitig_699.g19268 Utricularia gibba HOM05D005572 ORTHO05D007494 1.2e-23 114.4 121 55.4
FvH4_1g08940 Fragaria vesca HOM05D005572 ORTHO05D007494 3.5e-23 112.8 121 52.9
FAN23G2476 Fragaria x ananassa HOM05D005572 ORTHO05D007494 3.5e-23 112.8 121 52.9
FAN26G2673 Fragaria x ananassa HOM05D005572 ORTHO05D007494 3.5e-23 112.8 121 52.9
SEGI_13708 Sequoiadendron giganteum HOM05D005572 ORTHO05D007494 3.5e-23 112.8 121 57.0
SMO340G0231 Selaginella moellendorffii HOM05D005572 ORTHO05D007494 6.7e-22 108.6 123 56.9
Lsat_1_v5_gn_5_140080 Lactuca sativa HOM05D005572 ORTHO05D007494 3.3e-21 106.3 111 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.1e-19 101.3 120 52.5
C02p28210 Brassica napus HOM05D005572 ORTHO05D042727 1.4e-19 100.9 56 89.3
BolC2t08866H Brassica oleracea HOM05D005572 ORTHO05D042727 1.4e-19 100.9 56 89.3
FAN26G3294 Fragaria x ananassa HOM05D005572 ORTHO05D007494 1.4e-19 100.9 141 45.4
AUR62025269 Chenopodium quinoa HOM05D005572 ORTHO05D007494 2.4e-19 100.1 121 52.9
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.0e-18 97.1 123 47.2
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.0e-14 84.7 131 43.5
Hma1.2p1_0071F.1_g037840 Hydrangea macrophylla HOM05D005572 ORTHO05D007494 3.0e-14 83.2 115 43.5
Cfa026811 Carpinus fangiana HOM05D005572 ORTHO05D007494 3.9e-14 82.8 163 36.2
HPP92_019421 Vanilla planifolia HOM05D005572 ORTHO05D007494 1.9e-13 80.5 121 47.1
HPP92_019441 Vanilla planifolia HOM05D005572 ORTHO05D007494 7.4e-13 78.6 88 47.7
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.7e-12 76.3 131 40.5
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.7e-12 76.3 120 40.8
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 7.7e-10 68.6 31 90.3
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 3.8e-09 66.2 30 90.0
Lsat_1_v5_gn_4_4901 Lactuca sativa HOM05D005572 ORTHO05D007494 6.5e-09 65.5 49 67.3
Lsat_1_v5_gn_7_51901 Lactuca sativa HOM05D005572 ORTHO05D000418 6.5e-09 65.5 49 67.3
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 8.5e-09 65.1 86 45.3
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.4e-08 64.3 29 93.1
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 2.5e-08 63.5 34 85.3
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 4.2e-08 62.8 30 86.7
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 5.5e-08 62.4 30 86.7
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 7.2e-08 62.0 34 73.5
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 7.2e-08 62.0 30 86.7
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 7.2e-08 62.0 28 92.9
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 7.2e-08 62.0 129 38.0
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.2e-07 61.2 35 68.6
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.1e-07 60.5 36 72.2
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.1e-07 60.5 35 68.6
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 2.7e-07 60.1 35 65.7
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 3.6e-07 59.7 34 73.5
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 3.6e-07 59.7 34 67.6
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 4.6e-07 59.3 34 76.5
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 4.6e-07 59.3 34 76.5
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 4.6e-07 59.3 34 76.5
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 6.1e-07 58.9 28 89.3
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 6.1e-07 58.9 32 68.8
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.0e-06 58.2 36 66.7
Dinv25545 Davidia involucrata HOM05D005572 ORTHO05D007494 1.4e-06 57.8 99 47.5
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 1.8e-06 57.4 26 88.5
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.8e-06 57.4 32 71.9
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.8e-06 57.4 36 66.7
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 3.0e-06 56.6 27 88.9
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 3.0e-06 56.6 27 88.9
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 3.0e-06 56.6 27 88.9
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 3.0e-06 56.6 34 70.6
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 3.0e-06 56.6 35 68.6
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 3.9e-06 56.2 35 68.6
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.9e-06 56.2 37 64.9
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 3.9e-06 56.2 36 66.7
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 5.1e-06 55.8 36 61.1
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 5.1e-06 55.8 35 68.6
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 5.1e-06 55.8 36 66.7
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 6.7e-06 55.5 37 62.2
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 8.8e-06 55.1 46 58.7


User provided reference genes

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