Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 2055.4 1045 100.0
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 2050.8 1046 99.9
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 2026.1 1046 98.6
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 2018.4 1046 98.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1941.8 1089 92.5
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1874.0 1070 90.7
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1830.1 1070 88.1
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1820.4 1070 87.8
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1652.9 1078 79.6
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1571.2 877 92.0
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1562.0 1006 77.8
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1552.0 1077 73.6
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1551.6 1007 76.0
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1551.2 1007 76.0
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1545.8 1050 74.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1545.0 1007 75.7
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1544.3 1078 73.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1543.5 1068 74.1
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1071 72.9
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1538.1 1079 72.8
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1531.5 1077 72.9
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1519.6 1083 72.0
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1518.1 1058 72.0
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1512.7 1081 71.8
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1510.0 1073 71.9
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1508.8 1075 72.0
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1506.1 1073 72.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1503.4 1077 72.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1501.1 1078 70.7
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1496.5 1124 70.2
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1494.2 1018 73.5
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1492.2 1005 73.6
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1488.8 1075 70.1
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1483.0 1087 73.9
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1481.5 1072 71.3
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1478.4 1081 69.8
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 1071 71.7
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1475.3 1000 73.8
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1473.8 1076 69.3
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1473.4 1071 71.5
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1473.0 1073 69.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1472.2 1023 72.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1469.1 1074 69.7
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1467.6 1082 70.3
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1466.8 1075 70.1
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1464.5 1072 69.0
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1463.0 1081 69.8
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1460.7 1071 71.2
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1460.3 1076 69.1
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1458.7 1078 69.3
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1457.6 1076 68.6
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1456.4 1068 69.5
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1454.1 1069 69.3
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1453.7 1057 70.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1448.3 1092 69.7
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1442.2 1042 70.7
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1440.2 1085 68.8
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1437.2 1070 69.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1424.1 1162 64.5
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1422.1 1130 66.3
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1413.7 1068 68.4
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1404.0 1102 66.3
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1402.1 972 71.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1399.8 949 74.4
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1397.9 1076 68.2
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1392.1 966 72.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1390.6 989 70.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1382.9 1080 67.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1382.1 1061 66.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1376.3 1091 65.6
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1375.9 1005 68.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1369.4 948 72.4
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1355.1 1220 60.4
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1354.7 958 71.8
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1354.3 1068 65.8
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1352.0 947 73.7
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1343.6 1093 65.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1286.9 979 65.3
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1236.9 1017 61.3
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1226.1 869 72.2
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 0.0e+00 1223.4 752 84.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1214.9 1008 61.4
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1206.8 1199 55.7
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1196.4 957 67.5
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1195.3 1003 61.4
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1183.7 1118 57.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1130.9 1019 55.4
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 1.4e-310 1069.7 1117 54.1
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.4e-305 1052.4 1053 52.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 5.8e-296 1021.1 618 85.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 5.6e-283 978.0 1025 51.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.6e-282 976.5 1015 51.1
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.6e-282 976.5 1083 51.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 9.9e-280 967.2 648 74.5
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.9e-270 936.4 977 53.5
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.2e-239 833.2 584 73.1
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.7e-210 737.3 586 63.3
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 3.6e-205 719.5 410 88.5
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 2.3e-199 700.3 499 72.7
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 9.9e-195 684.9 507 69.0
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.7e-194 684.1 471 73.0
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-184 650.6 797 51.2
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 4.0e-180 636.3 620 56.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.0e-175 620.2 459 67.1
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 4.8e-157 559.7 367 79.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 2.9e-154 550.4 626 52.9
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.3e-143 514.2 347 77.2
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.7e-141 506.9 398 64.8
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 2.3e-127 461.1 319 72.1
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.4e-124 451.1 309 77.0
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.9e-122 444.1 343 69.7
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.6e-120 438.3 285 73.0
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 5.2e-119 433.3 392 59.9
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.3e-106 391.3 797 37.8
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.6e-104 384.0 294 64.3
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.4e-100 372.1 195 89.7
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.0e-95 355.9 241 72.2
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 2.2e-85 321.6 292 51.7
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.2e-77 295.0 222 71.2
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.8e-55 222.2 173 69.9
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.3e-50 206.1 145 72.4
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 5.6e-49 200.7 190 58.4
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 5.6e-49 200.7 187 60.4
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.0e-42 179.9 150 60.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 5.5e-36 157.5 108 74.1
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.3e-34 152.9 194 45.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 8.7e-34 150.2 100 68.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.1e-33 149.8 149 55.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.1e-31 141.7 112 60.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 2.0e-30 139.0 127 52.8
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 6.5e-29 134.0 105 66.7
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 9.4e-28 130.2 88 70.5
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 4.6e-27 127.9 90 62.2
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 4.6e-27 127.9 104 57.7
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.8e-26 125.9 215 40.9
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.7e-25 120.9 123 61.8
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.7e-25 120.9 123 61.8
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.0e-21 110.2 95 64.2
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.7e-19 102.1 78 64.1
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 4.7e-19 101.3 73 68.5
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 6.1e-19 100.9 207 33.3
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.8e-18 97.1 71 66.2
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.7e-17 94.4 69 66.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.1e-12 80.1 109 47.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 3.6e-11 75.1 51 66.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 6.1e-11 74.3 55 67.3
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 1.4e-10 73.2 59 67.8
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.8e-07 62.8 44 68.2
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.8e-07 62.8 44 68.2
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.8e-07 62.8 44 68.2
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 3.1e-07 62.0 44 68.2
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 4.1e-07 61.6 54 57.4
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 5.3e-07 61.2 55 56.4
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 9.1e-07 60.5 43 67.4
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 2.7e-06 58.9 44 63.6
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.7e-06 58.9 37 64.9


User provided reference genes

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